ISGme3
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007517 | ND | Geobacter metallireducens | Geobacter metallireducens GS-15 |
DNA section
IS Length : 1484 bp
Ends
IR Length : 16/17
IRL : GTCGCCCCTGAAAAAGTATAACATACTGATGTTATTGATATAATTTGCGT
IRR : GTCGTCCCTGAAAAAGTCCCCAAACGGTCTCAGTTGGTCTGAAACCGGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTGCCAACTCCGA | TTGTTTA | GCCTACCAAC | 7 |
DNA sequence
GTCGCCCCTGAAAAAGTATAACATACTGATGTTATTGATATAATTTGCGTTTATTGTGTGGTAAAATCGCCAGCAATTGAATCAACACTCTCAAAACCTG
GTGATTTCATGAAACCAAAAACAAGCGCCACCGGCCAGGAAGATCTGTTCCGCTCCCGACTCGATCAGATCCTCAACCGCCGGCATCCCCTGTTCCGCCT
GGCCAACACCATCGACTGGACGGTCTTTGACAAGGAGTTTGGTTCCCACTACGTCGCCAAAATCGGTCGACCGGGACTGCCGATCCGTTTGCTGGTCGGG
CTGCACTACCTCAAGCATGCCTACAATGTGAGCGATGAGGCGGTGGTAGCCCAGTTCATCGAAAACGGTTACTGGCAGTACTTCTGCGGCTTCGAACACT
TCCAGCACCAGTTCCCGCTCGATCCGACCACGTTGGTCAAGTGGCGCAAGCGCATCGGACCCAAGGGGATGGAGAAGTTGCTCCAGGTGACCATCGAGAC
GGCCAAGGGCAAGGAGTACGTGACCGAAAAAGACCTGGAGCGAGTCAACGTCGACACCACGGTCCAGGAAAAGGCCATCGCCTTTCCGACCGACGCCCGA
CTTTACCACAAGGCCCGGCGTATTCTGGTGCGGCTCGCCAGAAGAGGCGGCATCGAGCTTCGCCAGAGTTACGAGCGACTTGGCAAGCGGGCCTTCATCA
TGCAGGGTCGTTACAGCCACGCCCGGCAGACGAAACGGGCCAAGCGGGAACAAAAGCGGCTGCGCCTGTACCTTGGCCGGGTGATTCGTGACATCCAACG
CAAATGCGAGGCTCCGGCCCCTCTGCTGGCCACCATGCTGGAGCGGGCGAAGCGGATCTTTGGCCAGAAGCGAAACGACTCGAACAAGCTCTACAGCATG
CAGGCCCCCGAAGTGGAATGCATCGCCAAGGGCAAGGCCCACAAGAAATACGAATTTGGCTGCAAGGTATCGCTGGTCAGCACCTCAGAGAACAGCTGGA
TCGTCGGCGTTCAGGCCGTCCATGGCAACCCGTATGACGGGCATACCCTAAAAGAGGCGCTCGATCAGGCACAGGCCATCAGTGGCTGGCGCCCCCAGCA
TGCTTATTGCGACAAAGGCTACAAAGGCGCCCCGGCAAAACTCGACAGCACCGAGATCCATCTGGCCAACAAGAAAAAGAAGAGCATGAAGGCCAGCGCC
TGGAAATGGTATCGCAGGCGCAGCGGCATCGAGCCGATTATCGGCCACGTCAAGCAAGACCACCGGATGGACCGCAACTACCTGAAGGGCGAAGAAGGCG
ACAAAATCAACGCCATCCTGGCCGGGTGCGGCTTCAACATCAGGAAGCTCCTCAGAGCTATCCTTTTGTGGCTTTTCAAAGAGCGATTCAGGGGCATCGA
TCTGAACCTGATGCCCTTGCTGGAGTGCTTACCCTGCCGGTTTCAGACCAACTGAGACCGTTTGGGGACTTTTTCAGGGACGAC
GTGATTTCATGAAACCAAAAACAAGCGCCACCGGCCAGGAAGATCTGTTCCGCTCCCGACTCGATCAGATCCTCAACCGCCGGCATCCCCTGTTCCGCCT
GGCCAACACCATCGACTGGACGGTCTTTGACAAGGAGTTTGGTTCCCACTACGTCGCCAAAATCGGTCGACCGGGACTGCCGATCCGTTTGCTGGTCGGG
CTGCACTACCTCAAGCATGCCTACAATGTGAGCGATGAGGCGGTGGTAGCCCAGTTCATCGAAAACGGTTACTGGCAGTACTTCTGCGGCTTCGAACACT
TCCAGCACCAGTTCCCGCTCGATCCGACCACGTTGGTCAAGTGGCGCAAGCGCATCGGACCCAAGGGGATGGAGAAGTTGCTCCAGGTGACCATCGAGAC
GGCCAAGGGCAAGGAGTACGTGACCGAAAAAGACCTGGAGCGAGTCAACGTCGACACCACGGTCCAGGAAAAGGCCATCGCCTTTCCGACCGACGCCCGA
CTTTACCACAAGGCCCGGCGTATTCTGGTGCGGCTCGCCAGAAGAGGCGGCATCGAGCTTCGCCAGAGTTACGAGCGACTTGGCAAGCGGGCCTTCATCA
TGCAGGGTCGTTACAGCCACGCCCGGCAGACGAAACGGGCCAAGCGGGAACAAAAGCGGCTGCGCCTGTACCTTGGCCGGGTGATTCGTGACATCCAACG
CAAATGCGAGGCTCCGGCCCCTCTGCTGGCCACCATGCTGGAGCGGGCGAAGCGGATCTTTGGCCAGAAGCGAAACGACTCGAACAAGCTCTACAGCATG
CAGGCCCCCGAAGTGGAATGCATCGCCAAGGGCAAGGCCCACAAGAAATACGAATTTGGCTGCAAGGTATCGCTGGTCAGCACCTCAGAGAACAGCTGGA
TCGTCGGCGTTCAGGCCGTCCATGGCAACCCGTATGACGGGCATACCCTAAAAGAGGCGCTCGATCAGGCACAGGCCATCAGTGGCTGGCGCCCCCAGCA
TGCTTATTGCGACAAAGGCTACAAAGGCGCCCCGGCAAAACTCGACAGCACCGAGATCCATCTGGCCAACAAGAAAAAGAAGAGCATGAAGGCCAGCGCC
TGGAAATGGTATCGCAGGCGCAGCGGCATCGAGCCGATTATCGGCCACGTCAAGCAAGACCACCGGATGGACCGCAACTACCTGAAGGGCGAAGAAGGCG
ACAAAATCAACGCCATCCTGGCCGGGTGCGGCTTCAACATCAGGAAGCTCCTCAGAGCTATCCTTTTGTGGCTTTTCAAAGAGCGATTCAGGGGCATCGA
TCTGAACCTGATGCCCTTGCTGGAGTGCTTACCCTGCCGGTTTCAGACCAACTGAGACCGTTTGGGGACTTTTTCAGGGACGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 109 | 1455 | + | No |
Chemistry : DDE
ORF sequence :
MKPKTSATGQEDLFRSRLDQILNRRHPLFRLANTIDWTVFDKEFGSHYVAKIGRPGLPIRLLVGLHYLKHAYNVSDEAVVAQFIENGYWQYFCGFEHFQH
QFPLDPTTLVKWRKRIGPKGMEKLLQVTIETAKGKEYVTEKDLERVNVDTTVQEKAIAFPTDARLYHKARRILVRLARRGGIELRQSYERLGKRAFIMQG
RYSHARQTKRAKREQKRLRLYLGRVIRDIQRKCEAPAPLLATMLERAKRIFGQKRNDSNKLYSMQAPEVECIAKGKAHKKYEFGCKVSLVSTSENSWIVG
VQAVHGNPYDGHTLKEALDQAQAISGWRPQHAYCDKGYKGAPAKLDSTEIHLANKKKKSMKASAWKWYRRRSGIEPIIGHVKQDHRMDRNYLKGEEGDKI
NAILAGCGFNIRKLLRAILLWLFKERFRGIDLNLMPLLECLPCRFQTN
QFPLDPTTLVKWRKRIGPKGMEKLLQVTIETAKGKEYVTEKDLERVNVDTTVQEKAIAFPTDARLYHKARRILVRLARRGGIELRQSYERLGKRAFIMQG
RYSHARQTKRAKREQKRLRLYLGRVIRDIQRKCEAPAPLLATMLERAKRIFGQKRNDSNKLYSMQAPEVECIAKGKAHKKYEFGCKVSLVSTSENSWIVG
VQAVHGNPYDGHTLKEALDQAQAISGWRPQHAYCDKGYKGAPAKLDSTEIHLANKKKKSMKASAWKWYRRRSGIEPIIGHVKQDHRMDRNYLKGEEGDKI
NAILAGCGFNIRKLLRAILLWLFKERFRGIDLNLMPLLECLPCRFQTN
Blast result :
Comments
The complete copy of ISGme3 in the genome have a ponctual deletion at position 176 a "C" is missing. The sequence in the database is complete.
ISGme3 is 66% aa similar to ISRme12.
ISGme3 is 66% aa similar to ISRme12.
References
1]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
[2] Muktak Aklujkar (2007) Direct submission.
[2] Muktak Aklujkar (2007) Direct submission.