ISGur4
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009483 | ND | Geobacter uraniumreducens | Geobacter uraniumreducens Rf4 |
DNA section
IS Length : 1335 bp
Ends
IR Length : 19/26
IRL : CAGCATTGTCCGGTTTGGTCTTTGCAAGGTTCTTTGAGAATGTAAAAAAG
IRR : CAGTAACTTCCGGTTAGGTTTTTGCACGACGTTTCTTACGTTTCAACTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTTTTCTTT | AAAATTATT | ACGAAAGACC | 9 |
DNA sequence
CAGCATTGTCCGGTTTGGTCTTTGCAAGGTTCTTTGAGAATGTAAAAAAGTTGTAAAATCAGCGTTATACCGCATTATTTGCTTGACTTTGAGTAAAAAA
ACGGTGGTCCGCACTCGTAACTATCCAATATTACAGGAGTTACGATATGCGACCGTTCAAACGACTGAAACAAAGACGAAAATCACGCGCTTTCAAATTG
CTTCTTACCCCGATTTTTGAGAGATTCAAGTCAGATAATGAACTTGAATCCAGGGGGTATCGCCCGTTGCAAATGACTTTCGATGATCAGCTAAAAGCCC
TGATCTTTTATCACTTGGAAGAGTTCTCTTCCGGGAGCGAACTTCTCCAGGCGCTGGATCAGGATGACTTCGCCAAGGAATGTGTTGCTCCCCCCAAGGG
AATCAAAAAGAGCTCTTTCTTTGAGGCAATCAACAACCGTGGTCTTGAACAGCTTTCCGAGGTATTCGGGCATCTTGTCAAGCAAGCAGGCAGAGTGCTT
CCCGATGAATATGCTCACCTTGGCAATCTGGTATCCATAGACGGTTCTTTGATAGATGCTGTTCTATCTATGGAATGGGCAGATTACCGAAGCGGCTCTA
AGAAGGCCAAGGCCCATATCGGCTTCGATATCAACCGTGGTATTCCAAGGAAGATATTCCTGACCGACGGTAAAGAGGGTGAGCGCCCCTTTGTTGATAA
GATCATCGACAAAGGCGAAACCGGTGTCATGGATCGTGGGTATCAGTCTCATAATCACTTTGACCAGTGGCAGGCCGCCGAGAAGTTTTTTGTCTGCCGT
ATCAGGGAGAATACACACAAAACCGTCATCAGAGAGAATGCCGTAAATCCTGACAGTATTGTCTTCTATGACCAGATAGTACTTCTCGGCACCAAAGGTA
TAAACCAGACTGAGAAAGAGCTGCGCCTTGTTGGTTACCGTATTGACGGCAAGGACTACTGGGTAGCAACCAACAGATACGACCTGACGGCTGAAGAAGT
GGCCCAGGTTTATAAACTGCGCTGGAACATAGAGACCTTCTTCGGTTGGTGGAAACGCCACCTAAAGGTGTATCACCTGATTGCCAGAAGCGAATATGGT
CTCATGGTTCAAATACTTGGTGGTCTCATCACCTATCTGCTGCTAGCCATCTATTGCCGTGAGCAGCACCAGGAGCCAGTCAGCATTAGCAGGGTACGAG
AATTACGCAATCAGATTGCAAATGAAGCAGCAGCCGAACAGCAGAGCCGTCGCACAAGAATACAAGGTAACTCAAACAAAATTAGACAGTTGAAACGTAA
GAAACGTCGTGCAAAAACCTAACCGGAAGTTACTG
ACGGTGGTCCGCACTCGTAACTATCCAATATTACAGGAGTTACGATATGCGACCGTTCAAACGACTGAAACAAAGACGAAAATCACGCGCTTTCAAATTG
CTTCTTACCCCGATTTTTGAGAGATTCAAGTCAGATAATGAACTTGAATCCAGGGGGTATCGCCCGTTGCAAATGACTTTCGATGATCAGCTAAAAGCCC
TGATCTTTTATCACTTGGAAGAGTTCTCTTCCGGGAGCGAACTTCTCCAGGCGCTGGATCAGGATGACTTCGCCAAGGAATGTGTTGCTCCCCCCAAGGG
AATCAAAAAGAGCTCTTTCTTTGAGGCAATCAACAACCGTGGTCTTGAACAGCTTTCCGAGGTATTCGGGCATCTTGTCAAGCAAGCAGGCAGAGTGCTT
CCCGATGAATATGCTCACCTTGGCAATCTGGTATCCATAGACGGTTCTTTGATAGATGCTGTTCTATCTATGGAATGGGCAGATTACCGAAGCGGCTCTA
AGAAGGCCAAGGCCCATATCGGCTTCGATATCAACCGTGGTATTCCAAGGAAGATATTCCTGACCGACGGTAAAGAGGGTGAGCGCCCCTTTGTTGATAA
GATCATCGACAAAGGCGAAACCGGTGTCATGGATCGTGGGTATCAGTCTCATAATCACTTTGACCAGTGGCAGGCCGCCGAGAAGTTTTTTGTCTGCCGT
ATCAGGGAGAATACACACAAAACCGTCATCAGAGAGAATGCCGTAAATCCTGACAGTATTGTCTTCTATGACCAGATAGTACTTCTCGGCACCAAAGGTA
TAAACCAGACTGAGAAAGAGCTGCGCCTTGTTGGTTACCGTATTGACGGCAAGGACTACTGGGTAGCAACCAACAGATACGACCTGACGGCTGAAGAAGT
GGCCCAGGTTTATAAACTGCGCTGGAACATAGAGACCTTCTTCGGTTGGTGGAAACGCCACCTAAAGGTGTATCACCTGATTGCCAGAAGCGAATATGGT
CTCATGGTTCAAATACTTGGTGGTCTCATCACCTATCTGCTGCTAGCCATCTATTGCCGTGAGCAGCACCAGGAGCCAGTCAGCATTAGCAGGGTACGAG
AATTACGCAATCAGATTGCAAATGAAGCAGCAGCCGAACAGCAGAGCCGTCGCACAAGAATACAAGGTAACTCAAACAAAATTAGACAGTTGAAACGTAA
GAAACGTCGTGCAAAAACCTAACCGGAAGTTACTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1176 bp | 391 aa | 147 | 1322 | + | No |
Chemistry : DDE
ORF sequence :
MRPFKRLKQRRKSRAFKLLLTPIFERFKSDNELESRGYRPLQMTFDDQLKALIFYHLEEFSSGSELLQALDQDDFAKECVAPPKGIKKSSFFEAINNRGL
EQLSEVFGHLVKQAGRVLPDEYAHLGNLVSIDGSLIDAVLSMEWADYRSGSKKAKAHIGFDINRGIPRKIFLTDGKEGERPFVDKIIDKGETGVMDRGYQ
SHNHFDQWQAAEKFFVCRIRENTHKTVIRENAVNPDSIVFYDQIVLLGTKGINQTEKELRLVGYRIDGKDYWVATNRYDLTAEEVAQVYKLRWNIETFFG
WWKRHLKVYHLIARSEYGLMVQILGGLITYLLLAIYCREQHQEPVSISRVRELRNQIANEAAAEQQSRRTRIQGNSNKIRQLKRKKRRAKT
EQLSEVFGHLVKQAGRVLPDEYAHLGNLVSIDGSLIDAVLSMEWADYRSGSKKAKAHIGFDINRGIPRKIFLTDGKEGERPFVDKIIDKGETGVMDRGYQ
SHNHFDQWQAAEKFFVCRIRENTHKTVIRENAVNPDSIVFYDQIVLLGTKGINQTEKELRLVGYRIDGKDYWVATNRYDLTAEEVAQVYKLRWNIETFFG
WWKRHLKVYHLIARSEYGLMVQILGGLITYLLLAIYCREQHQEPVSISRVRELRNQIANEAAAEQQSRRTRIQGNSNKIRQLKRKKRRAKT
Blast result :
Comments
ISGur4 is 96% aa similar to ISPepr3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,Aklujkar,M., Lovley,D. and Richardson,P.(2007) Direct submission GenBank.