ISGur9

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009483 ND Geobacter uraniumreducens
Geobacter uraniumreducens Rf4
DNA section
IS Length : 2553 bp

Ends


IR Length : 42 /50

IRL : TGGACAGTCATTCCGGTTTTGAATGGACACCGATTCCGGTTTTAACTGGA
IRR : TGGACAGTGATTCCGGTTTTGTCTGGACAGGGTTTCCGATTTTAACTGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGGAAAAGGTCAAATCGGCT2

DNA sequence

TGGACAGTCATTCCGGTTTTGAATGGACACCGATTCCGGTTTTAACTGGACACTTTTTCGGGATTTCCGGAATAGGTGTCCAATCTTTTCCGGACTAACT
TTTTTTCATCTTCCTGTCACATCATCTACCATCTTCGGAAAAACTTTCCGGAGGCTATGGTGAAGAAAGGCAGAAAGAAATCAATGAGAACAGCACGTGA
AATTCTAAGACTCCATTTTGAGCACGACCTGAGCAGGCGGGCCATTGCCCGGGCCTGTGCAGTTTCTCCCACGACCGTCGGCGATTACCTGGAGCGCATC
AAACGATCAGGCTTGGCCTGGGCCGCCATTTCTGCCCTTGACGACAGTTCTTTGAAAACTCGTCTCTACACCGAAGGTCGTGGCGCTCCTTCTCGCAAGC
CTCTTCCCGACTTTGATTATCTGCGCCTGGAGATGAAGAAAAAAGGGGTAACCCTTCAACTTCTCTGGGAAGAATACCGGTCAATCCATCCTGACGGCTA
TAGCCGCAGCCAGTTCTGCGAACTTTACCAGAAGCACGGCAAGAGACTAGATCCGGTCATGCGCTTCGATCACAAGGCCGGGGAGAAACTGTTCGTCGAT
TTCTCCGGAGATCGCCCCTCATATGTTGACCGTGAGACCGGTGAAGTTGTTGTGCCGGAACTGTTTGTCGCGGCCTTGGGAGCCAGTTCCCGGATTTTTG
CCGTGGCGGTCGCCAGTCAGCAGATCCCCGACTGGACCATGGCGCATATCGGCGCCTTCGAATACTTTGGCGGCGTTCCAGCCGTTGTGGTTCCGGATCA
ACTGAAGTCGGGGGTCAAGACCTCCTGCAAGTATGACCCGGAAATCAATCCGGCTTACGCTGAACTCTGTGCCCACTACGGCGTGACAGTGATCCCCGCC
CGGCCCCGTGAACCCCGCGACAAGGCCAAGGTGGAAAACAGCGTCCTCATCGCCCAACGGCGGATACTGGCGGCCCTGCGTAATCGCACCTTCTTCTCGC
TGGCGGAGCTGAACGACGCCATTGCTGTGGAGCTGGAGAAACTGAACGACCGCCCCATGCAGGGGGTCGGCAAATCGAGAAACCAACTCTTTGCCGAGAT
TGACCAACCGGCGCTGAAGGCTTTGCCCGCACAGCGGTTTCTGCTGCAAGACTGGAAGAAAGCCAAAGTCCACATTGACTACCATGTGGCGGTGCAGGGC
TCTTTTTACAGCGTGCCCTATACGCTGATTGGCAAGGAAGTGACGGTCTGTATCACTGCCACAATGGTAGCCATCCTCCATGACGGCAAGCGCGTTGCGT
CCCATGCCCGCACCCACAAGAAGAATGTCTATATTACCCTGGAAGCCCATCGTCCCCCCAGTCACCAACAGTACCTGAAGTGGACCCCGGAGAGGATGCG
GCGCTGGGGAGAAAGCATCGGTGCGCAAACCGGCGCAATGATCGAAGCCATCATCCGGACAGCGGCTCATCCCGATCAGGCCTACCGCCGCTGCCTGGGG
CTCTTGAGACTGGCTACAAGGTACGGCGATGGCCGACTGGAACTGGCCTGCGACCGGGCGCTCAAGCTCCAGGCCATCGGCTACCACTGCGTCAAGAATA
TCCTGGATAAAGGTCTCGAAACAGCCGACATACCGAAGGATGACGAGGAGTCACTGCCGCTGCTCCATGACAACGTCAGAGGGAGCGAGTACTTTGCGGG
AGGTGTCCAATGATGTTGGAAATGACCCTCGGCAAACTGAACCAGCTCAAACTCTCCGGCATGGCCGAGGCCTTGACCGAGCAGACCCAGAGCACCATCT
ACACCGGACTCTCCTTCGAAGAGCGCCTGGGAATGCTTGTTGACCGGGAAATGACCCTGCGGGACAACCGCCGACTGACTAATCTGCTGCGGGGAGCAAG
GCTTCGCTACGCCAGCGCCTGTCCAGAGGAGATCGACTTCCGGACACCACGGGGCCTTGCCAAAGATGTTGTCCTCTCTCTGATGCAGAACAGTTGGGTA
AAGGGGAAACAGAATGTCATCATTACCGGACCCACCGGCAGCGGCAAAACCTTCATTGCCTGCGCTCTGGCCAACAGCGCCTGCCGTAACGGTCACAGCG
CCCACTACATCCGGTTACCGCGACTGCTCCAAGAGTTACACATAGCCAGGGGGGACGGCAGCTACGGCAAGCTGCTGACCCGTCTCGCCAAGTATGCGAT
TCTGATTATTGATGACTGGGGTCTGGCTAAATTCAACGACAAAGAACGCCGGGACATCCTGGAGGTTCTGGAAGACCGACACGGCATCACCTCAACCATC
ATCGCCAGCCAGATCCCCACGGAAAAATGGCACGACGCCATCGGTGATCCCACCATTGCCGATGCAGTACTGGACAGGCTGGTTCACAATGCACACATGA
TCACCATGAAAGGAGAATCGATGCGAAAACTGTTGTCAAAGAACAAGTAAACTGGACACCCTGAAACCACAACCACGACAGAAAGAACAGAAGAAAACCA
CTGTCCAGTTAAAATCGGAAACCCTGTCCAGACAAAACCGGAATCACTGTCCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
2291 bp517 aa1602450+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKGRKKSMRTAREILRLHFEHDLSRRAIARACAVSPTTVGDYLERIKRSGLAWAAISALDDSSLKTRLYTEGRGAPSRKPLPDFDYLRLEMKKKGVTLQ
LLWEEYRSIHPDGYSRSQFCELYQKHGKRLDPVMRFDHKAGEKLFVDFSGDRPSYVDRETGEVVVPELFVAALGASSRIFAVAVASQQIPDWTMAHIGAF
EYFGGVPAVVVPDQLKSGVKTSCKYDPEINPAYAELCAHYGVTVIPARPREPRDKAKVENSVLIAQRRILAALRNRTFFSLAELNDAIAVELEKLNDRPM
QGVGKSRNQLFAEIDQPALKALPAQRFLLQDWKKAKVHIDYHVAVQGSFYSVPYTLIGKEVTVCITATMVAILHDGKRVASHARTHKKNVYITLEAHRPP
SHQQYLKWTPERMRRWGESIGAQTGAMIEAIIRTAAHPDQAYRRCLGLLRLATRYGDGRLELACDRALKLQAIGYHCVKNILDKGLETADIPKDDEESLP
LLHDNVRGSEYFAGGVQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
741 bp246 aa17102450+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MMLEMTLGKLNQLKLSGMAEALTEQTQSTIYTGLSFEERLGMLVDREMTLRDNRRLTNLLRGARLRYASACPEEIDFRTPRGLAKDVVLSLMQNSWVKGK
QNVIITGPTGSGKTFIACALANSACRNGHSAHYIRLPRLLQELHIARGDGSYGKLLTRLAKYAILIIDDWGLAKFNDKERRDILEVLEDRHGITSTIIAS
QIPTEKWHDAIGDPTIADAVLDRLVHNAHMITMKGESMRKLLSKNK

 

Blast result :
Comments
ISGur9 is 64% (ORFA) aa similar to ISPpu7 and 76% istB transposition helper aa similar to ISPpu7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,Aklujkar,M., Lovley,D. and Richardson,P.(2007) Direct submission GenBank.