ISGur9
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009483 | ND | Geobacter uraniumreducens | Geobacter uraniumreducens Rf4 |
DNA section
IS Length : 2553 bp
Ends
IR Length : 42 /50
IRL : TGGACAGTCATTCCGGTTTTGAATGGACACCGATTCCGGTTTTAACTGGA
IRR : TGGACAGTGATTCCGGTTTTGTCTGGACAGGGTTTCCGATTTTAACTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGGAAAAG | GT | CAAATCGGCT | 2 |
DNA sequence
TGGACAGTCATTCCGGTTTTGAATGGACACCGATTCCGGTTTTAACTGGACACTTTTTCGGGATTTCCGGAATAGGTGTCCAATCTTTTCCGGACTAACT
TTTTTTCATCTTCCTGTCACATCATCTACCATCTTCGGAAAAACTTTCCGGAGGCTATGGTGAAGAAAGGCAGAAAGAAATCAATGAGAACAGCACGTGA
AATTCTAAGACTCCATTTTGAGCACGACCTGAGCAGGCGGGCCATTGCCCGGGCCTGTGCAGTTTCTCCCACGACCGTCGGCGATTACCTGGAGCGCATC
AAACGATCAGGCTTGGCCTGGGCCGCCATTTCTGCCCTTGACGACAGTTCTTTGAAAACTCGTCTCTACACCGAAGGTCGTGGCGCTCCTTCTCGCAAGC
CTCTTCCCGACTTTGATTATCTGCGCCTGGAGATGAAGAAAAAAGGGGTAACCCTTCAACTTCTCTGGGAAGAATACCGGTCAATCCATCCTGACGGCTA
TAGCCGCAGCCAGTTCTGCGAACTTTACCAGAAGCACGGCAAGAGACTAGATCCGGTCATGCGCTTCGATCACAAGGCCGGGGAGAAACTGTTCGTCGAT
TTCTCCGGAGATCGCCCCTCATATGTTGACCGTGAGACCGGTGAAGTTGTTGTGCCGGAACTGTTTGTCGCGGCCTTGGGAGCCAGTTCCCGGATTTTTG
CCGTGGCGGTCGCCAGTCAGCAGATCCCCGACTGGACCATGGCGCATATCGGCGCCTTCGAATACTTTGGCGGCGTTCCAGCCGTTGTGGTTCCGGATCA
ACTGAAGTCGGGGGTCAAGACCTCCTGCAAGTATGACCCGGAAATCAATCCGGCTTACGCTGAACTCTGTGCCCACTACGGCGTGACAGTGATCCCCGCC
CGGCCCCGTGAACCCCGCGACAAGGCCAAGGTGGAAAACAGCGTCCTCATCGCCCAACGGCGGATACTGGCGGCCCTGCGTAATCGCACCTTCTTCTCGC
TGGCGGAGCTGAACGACGCCATTGCTGTGGAGCTGGAGAAACTGAACGACCGCCCCATGCAGGGGGTCGGCAAATCGAGAAACCAACTCTTTGCCGAGAT
TGACCAACCGGCGCTGAAGGCTTTGCCCGCACAGCGGTTTCTGCTGCAAGACTGGAAGAAAGCCAAAGTCCACATTGACTACCATGTGGCGGTGCAGGGC
TCTTTTTACAGCGTGCCCTATACGCTGATTGGCAAGGAAGTGACGGTCTGTATCACTGCCACAATGGTAGCCATCCTCCATGACGGCAAGCGCGTTGCGT
CCCATGCCCGCACCCACAAGAAGAATGTCTATATTACCCTGGAAGCCCATCGTCCCCCCAGTCACCAACAGTACCTGAAGTGGACCCCGGAGAGGATGCG
GCGCTGGGGAGAAAGCATCGGTGCGCAAACCGGCGCAATGATCGAAGCCATCATCCGGACAGCGGCTCATCCCGATCAGGCCTACCGCCGCTGCCTGGGG
CTCTTGAGACTGGCTACAAGGTACGGCGATGGCCGACTGGAACTGGCCTGCGACCGGGCGCTCAAGCTCCAGGCCATCGGCTACCACTGCGTCAAGAATA
TCCTGGATAAAGGTCTCGAAACAGCCGACATACCGAAGGATGACGAGGAGTCACTGCCGCTGCTCCATGACAACGTCAGAGGGAGCGAGTACTTTGCGGG
AGGTGTCCAATGATGTTGGAAATGACCCTCGGCAAACTGAACCAGCTCAAACTCTCCGGCATGGCCGAGGCCTTGACCGAGCAGACCCAGAGCACCATCT
ACACCGGACTCTCCTTCGAAGAGCGCCTGGGAATGCTTGTTGACCGGGAAATGACCCTGCGGGACAACCGCCGACTGACTAATCTGCTGCGGGGAGCAAG
GCTTCGCTACGCCAGCGCCTGTCCAGAGGAGATCGACTTCCGGACACCACGGGGCCTTGCCAAAGATGTTGTCCTCTCTCTGATGCAGAACAGTTGGGTA
AAGGGGAAACAGAATGTCATCATTACCGGACCCACCGGCAGCGGCAAAACCTTCATTGCCTGCGCTCTGGCCAACAGCGCCTGCCGTAACGGTCACAGCG
CCCACTACATCCGGTTACCGCGACTGCTCCAAGAGTTACACATAGCCAGGGGGGACGGCAGCTACGGCAAGCTGCTGACCCGTCTCGCCAAGTATGCGAT
TCTGATTATTGATGACTGGGGTCTGGCTAAATTCAACGACAAAGAACGCCGGGACATCCTGGAGGTTCTGGAAGACCGACACGGCATCACCTCAACCATC
ATCGCCAGCCAGATCCCCACGGAAAAATGGCACGACGCCATCGGTGATCCCACCATTGCCGATGCAGTACTGGACAGGCTGGTTCACAATGCACACATGA
TCACCATGAAAGGAGAATCGATGCGAAAACTGTTGTCAAAGAACAAGTAAACTGGACACCCTGAAACCACAACCACGACAGAAAGAACAGAAGAAAACCA
CTGTCCAGTTAAAATCGGAAACCCTGTCCAGACAAAACCGGAATCACTGTCCA
TTTTTTCATCTTCCTGTCACATCATCTACCATCTTCGGAAAAACTTTCCGGAGGCTATGGTGAAGAAAGGCAGAAAGAAATCAATGAGAACAGCACGTGA
AATTCTAAGACTCCATTTTGAGCACGACCTGAGCAGGCGGGCCATTGCCCGGGCCTGTGCAGTTTCTCCCACGACCGTCGGCGATTACCTGGAGCGCATC
AAACGATCAGGCTTGGCCTGGGCCGCCATTTCTGCCCTTGACGACAGTTCTTTGAAAACTCGTCTCTACACCGAAGGTCGTGGCGCTCCTTCTCGCAAGC
CTCTTCCCGACTTTGATTATCTGCGCCTGGAGATGAAGAAAAAAGGGGTAACCCTTCAACTTCTCTGGGAAGAATACCGGTCAATCCATCCTGACGGCTA
TAGCCGCAGCCAGTTCTGCGAACTTTACCAGAAGCACGGCAAGAGACTAGATCCGGTCATGCGCTTCGATCACAAGGCCGGGGAGAAACTGTTCGTCGAT
TTCTCCGGAGATCGCCCCTCATATGTTGACCGTGAGACCGGTGAAGTTGTTGTGCCGGAACTGTTTGTCGCGGCCTTGGGAGCCAGTTCCCGGATTTTTG
CCGTGGCGGTCGCCAGTCAGCAGATCCCCGACTGGACCATGGCGCATATCGGCGCCTTCGAATACTTTGGCGGCGTTCCAGCCGTTGTGGTTCCGGATCA
ACTGAAGTCGGGGGTCAAGACCTCCTGCAAGTATGACCCGGAAATCAATCCGGCTTACGCTGAACTCTGTGCCCACTACGGCGTGACAGTGATCCCCGCC
CGGCCCCGTGAACCCCGCGACAAGGCCAAGGTGGAAAACAGCGTCCTCATCGCCCAACGGCGGATACTGGCGGCCCTGCGTAATCGCACCTTCTTCTCGC
TGGCGGAGCTGAACGACGCCATTGCTGTGGAGCTGGAGAAACTGAACGACCGCCCCATGCAGGGGGTCGGCAAATCGAGAAACCAACTCTTTGCCGAGAT
TGACCAACCGGCGCTGAAGGCTTTGCCCGCACAGCGGTTTCTGCTGCAAGACTGGAAGAAAGCCAAAGTCCACATTGACTACCATGTGGCGGTGCAGGGC
TCTTTTTACAGCGTGCCCTATACGCTGATTGGCAAGGAAGTGACGGTCTGTATCACTGCCACAATGGTAGCCATCCTCCATGACGGCAAGCGCGTTGCGT
CCCATGCCCGCACCCACAAGAAGAATGTCTATATTACCCTGGAAGCCCATCGTCCCCCCAGTCACCAACAGTACCTGAAGTGGACCCCGGAGAGGATGCG
GCGCTGGGGAGAAAGCATCGGTGCGCAAACCGGCGCAATGATCGAAGCCATCATCCGGACAGCGGCTCATCCCGATCAGGCCTACCGCCGCTGCCTGGGG
CTCTTGAGACTGGCTACAAGGTACGGCGATGGCCGACTGGAACTGGCCTGCGACCGGGCGCTCAAGCTCCAGGCCATCGGCTACCACTGCGTCAAGAATA
TCCTGGATAAAGGTCTCGAAACAGCCGACATACCGAAGGATGACGAGGAGTCACTGCCGCTGCTCCATGACAACGTCAGAGGGAGCGAGTACTTTGCGGG
AGGTGTCCAATGATGTTGGAAATGACCCTCGGCAAACTGAACCAGCTCAAACTCTCCGGCATGGCCGAGGCCTTGACCGAGCAGACCCAGAGCACCATCT
ACACCGGACTCTCCTTCGAAGAGCGCCTGGGAATGCTTGTTGACCGGGAAATGACCCTGCGGGACAACCGCCGACTGACTAATCTGCTGCGGGGAGCAAG
GCTTCGCTACGCCAGCGCCTGTCCAGAGGAGATCGACTTCCGGACACCACGGGGCCTTGCCAAAGATGTTGTCCTCTCTCTGATGCAGAACAGTTGGGTA
AAGGGGAAACAGAATGTCATCATTACCGGACCCACCGGCAGCGGCAAAACCTTCATTGCCTGCGCTCTGGCCAACAGCGCCTGCCGTAACGGTCACAGCG
CCCACTACATCCGGTTACCGCGACTGCTCCAAGAGTTACACATAGCCAGGGGGGACGGCAGCTACGGCAAGCTGCTGACCCGTCTCGCCAAGTATGCGAT
TCTGATTATTGATGACTGGGGTCTGGCTAAATTCAACGACAAAGAACGCCGGGACATCCTGGAGGTTCTGGAAGACCGACACGGCATCACCTCAACCATC
ATCGCCAGCCAGATCCCCACGGAAAAATGGCACGACGCCATCGGTGATCCCACCATTGCCGATGCAGTACTGGACAGGCTGGTTCACAATGCACACATGA
TCACCATGAAAGGAGAATCGATGCGAAAACTGTTGTCAAAGAACAAGTAAACTGGACACCCTGAAACCACAACCACGACAGAAAGAACAGAAGAAAACCA
CTGTCCAGTTAAAATCGGAAACCCTGTCCAGACAAAACCGGAATCACTGTCCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2291 bp | 517 aa | 160 | 2450 | + | No |
Chemistry : DDE
ORF sequence :
MKKGRKKSMRTAREILRLHFEHDLSRRAIARACAVSPTTVGDYLERIKRSGLAWAAISALDDSSLKTRLYTEGRGAPSRKPLPDFDYLRLEMKKKGVTLQ
LLWEEYRSIHPDGYSRSQFCELYQKHGKRLDPVMRFDHKAGEKLFVDFSGDRPSYVDRETGEVVVPELFVAALGASSRIFAVAVASQQIPDWTMAHIGAF
EYFGGVPAVVVPDQLKSGVKTSCKYDPEINPAYAELCAHYGVTVIPARPREPRDKAKVENSVLIAQRRILAALRNRTFFSLAELNDAIAVELEKLNDRPM
QGVGKSRNQLFAEIDQPALKALPAQRFLLQDWKKAKVHIDYHVAVQGSFYSVPYTLIGKEVTVCITATMVAILHDGKRVASHARTHKKNVYITLEAHRPP
SHQQYLKWTPERMRRWGESIGAQTGAMIEAIIRTAAHPDQAYRRCLGLLRLATRYGDGRLELACDRALKLQAIGYHCVKNILDKGLETADIPKDDEESLP
LLHDNVRGSEYFAGGVQ
LLWEEYRSIHPDGYSRSQFCELYQKHGKRLDPVMRFDHKAGEKLFVDFSGDRPSYVDRETGEVVVPELFVAALGASSRIFAVAVASQQIPDWTMAHIGAF
EYFGGVPAVVVPDQLKSGVKTSCKYDPEINPAYAELCAHYGVTVIPARPREPRDKAKVENSVLIAQRRILAALRNRTFFSLAELNDAIAVELEKLNDRPM
QGVGKSRNQLFAEIDQPALKALPAQRFLLQDWKKAKVHIDYHVAVQGSFYSVPYTLIGKEVTVCITATMVAILHDGKRVASHARTHKKNVYITLEAHRPP
SHQQYLKWTPERMRRWGESIGAQTGAMIEAIIRTAAHPDQAYRRCLGLLRLATRYGDGRLELACDRALKLQAIGYHCVKNILDKGLETADIPKDDEESLP
LLHDNVRGSEYFAGGVQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
741 bp | 246 aa | 1710 | 2450 | + | No |
AG : IS21 helper
ORF sequence :
MMLEMTLGKLNQLKLSGMAEALTEQTQSTIYTGLSFEERLGMLVDREMTLRDNRRLTNLLRGARLRYASACPEEIDFRTPRGLAKDVVLSLMQNSWVKGK
QNVIITGPTGSGKTFIACALANSACRNGHSAHYIRLPRLLQELHIARGDGSYGKLLTRLAKYAILIIDDWGLAKFNDKERRDILEVLEDRHGITSTIIAS
QIPTEKWHDAIGDPTIADAVLDRLVHNAHMITMKGESMRKLLSKNK
QNVIITGPTGSGKTFIACALANSACRNGHSAHYIRLPRLLQELHIARGDGSYGKLLTRLAKYAILIIDDWGLAKFNDKERRDILEVLEDRHGITSTIIAS
QIPTEKWHDAIGDPTIADAVLDRLVHNAHMITMKGESMRKLLSKNK
Blast result :
Comments
ISGur9 is 64% (ORFA) aa similar to ISPpu7 and 76% istB transposition helper aa similar to ISPpu7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,Aklujkar,M., Lovley,D. and Richardson,P.(2007) Direct submission GenBank.