ISGme7
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007517 | ND | Geobacter metallireducens | Geobacter metallireducens GS-15 |
DNA section
IS Length : 1305 bp
Ends
IR Length : 34/45
IRL : TGACCTTCCCCCCATCATCCAGCCATTTGGAAGTTAGTGATTTGGCCTTG
IRR : TGACCTTCCCCCCAGAAACTGAACCATTGCAAACTTAGTGATTTCTGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGGGACAGGGT | AACTAGGATTGA | 0 |
DNA sequence
TGACCTTCCCCCCATCATCCAGCCATTTGGAAGTTAGTGATTTGGCCTTGTGACCTTCCCCCTGTAAACTGATCCAAAAAATTGTGTTAGTCTTTCGGAA
TCCGAAAGGGGGCATAATGAAAAAATCTAGGTTTACAGAGGAGCAGGTAGCTGCGGCAATAAGACAGGCAGAATCAGGAGTTCCAGTTGCTGAGATCTGC
CGTCGTCTTGGAGTCACTGAAGTCACCTTTTACCGCTGGAAGAAGCAATTTGCCGGCATGGGTGTGACCGAACTGAGAAAGCTACGTCAACTCGAAGACG
AGAATCGCAAGCTCAAGTCATTAGTTGCCGATCTGACCCTGGACAAGCACATGCTTCAGGAGGTCATTGCATAAAAGCTGTGAAGCCGGCGCGCAAGCGG
CAGCTGGTTGAGTTCCTCCGAGTGGCTTTCAAGGTGAGTGAGCGCCATGCCTGCCGGCTGATACGATTGCAACGCTCAAGTCAGCGCTACCGGCATCGCC
GTAATGAACAGATTGCCTTGCGCATTCGGCTCAAAGAGCATGCTGCCGCTCGTCCTCGCTTTGGGTACTTGCGGTTACACATTCTGCTGCTTCGGGAAGG
CTGGCAGATCAACCGTAAACGCGTTTATCGATTGTACCGGTTGGAATGCCTTAACTGCGCCACAAGAAGCCTAAAAAGCGAATTTCGGCCTTGAGGGTTG
CTCATCCTGCACCGCAGAGACCTAATGAGTGTTGGAGCATGGACTTTGTTTCTGATAGCCTCCATGATGGTAGGCGATTTCGGGCCTTAACGATAGTCGA
TAACGTAAGCCGTGTTAGTCCGGCAATTGAGGTCGGAAACTCGCTCTCGGGGCGCCGGGTAGTCGATGTGCTTGAAGGTCTGGCCTATACATATGGCCTA
CCGAAGGTAATCCAAGTCGACAATGGACCGGAGTTCACCTCGAAGGCGCTGGATGAATGGGCTCACCGGAGAAAAATCAAGCTTCAGGTCAGTCGGCCAG
GCAAACCAACCGACAATCCGTTCATCGAGAGCTTCAACGGTCGGCTCCGGCAGGAATGTCTTGATCAAAGCTGGTTTATTTCAATAGAAGACGCCCAGAT
GAAAACCGAAGAATGGCGTGTAGATTACAACGAAAACCGGCCGCACAGTTCACTTGAAAACAGGGCTCCTAGCGACTTCCTGGATGCTTGGAACCAAAAT
CAACAAACCGAAAAACTAACACATCTTTTGGACCAAAAAACGGGGTAAGGTCACTAGACAGAAATCACTAAGTTTGCAATGGTTCAGTTTCTGGGGGGAA
GGTCA
TCCGAAAGGGGGCATAATGAAAAAATCTAGGTTTACAGAGGAGCAGGTAGCTGCGGCAATAAGACAGGCAGAATCAGGAGTTCCAGTTGCTGAGATCTGC
CGTCGTCTTGGAGTCACTGAAGTCACCTTTTACCGCTGGAAGAAGCAATTTGCCGGCATGGGTGTGACCGAACTGAGAAAGCTACGTCAACTCGAAGACG
AGAATCGCAAGCTCAAGTCATTAGTTGCCGATCTGACCCTGGACAAGCACATGCTTCAGGAGGTCATTGCATAAAAGCTGTGAAGCCGGCGCGCAAGCGG
CAGCTGGTTGAGTTCCTCCGAGTGGCTTTCAAGGTGAGTGAGCGCCATGCCTGCCGGCTGATACGATTGCAACGCTCAAGTCAGCGCTACCGGCATCGCC
GTAATGAACAGATTGCCTTGCGCATTCGGCTCAAAGAGCATGCTGCCGCTCGTCCTCGCTTTGGGTACTTGCGGTTACACATTCTGCTGCTTCGGGAAGG
CTGGCAGATCAACCGTAAACGCGTTTATCGATTGTACCGGTTGGAATGCCTTAACTGCGCCACAAGAAGCCTAAAAAGCGAATTTCGGCCTTGAGGGTTG
CTCATCCTGCACCGCAGAGACCTAATGAGTGTTGGAGCATGGACTTTGTTTCTGATAGCCTCCATGATGGTAGGCGATTTCGGGCCTTAACGATAGTCGA
TAACGTAAGCCGTGTTAGTCCGGCAATTGAGGTCGGAAACTCGCTCTCGGGGCGCCGGGTAGTCGATGTGCTTGAAGGTCTGGCCTATACATATGGCCTA
CCGAAGGTAATCCAAGTCGACAATGGACCGGAGTTCACCTCGAAGGCGCTGGATGAATGGGCTCACCGGAGAAAAATCAAGCTTCAGGTCAGTCGGCCAG
GCAAACCAACCGACAATCCGTTCATCGAGAGCTTCAACGGTCGGCTCCGGCAGGAATGTCTTGATCAAAGCTGGTTTATTTCAATAGAAGACGCCCAGAT
GAAAACCGAAGAATGGCGTGTAGATTACAACGAAAACCGGCCGCACAGTTCACTTGAAAACAGGGCTCCTAGCGACTTCCTGGATGCTTGGAACCAAAAT
CAACAAACCGAAAAACTAACACATCTTTTGGACCAAAAAACGGGGTAAGGTCACTAGACAGAAATCACTAAGTTTGCAATGGTTCAGTTTCTGGGGGGAA
GGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
578 bp | 192 aa | 117 | 694 | + | No |
Description : First part of the transposase
ORF sequence :
MKKSRFTEEQVAAAIRQAESGVPVAEICRRLGVTEVTFYRWKKQFAGMGVTELRKLRQLEDENRKLKSLVADLTLDKHMLQEVIAIKAVKPARKRQLVEF
LRVAFKVSERHACRLIRLQRSSQRYRHRRNEQIALRIRLKEHAAARPRFGYLRLHILLLREGWQINRKRVYRLYRLECLNCATRSLKSEFRP
LRVAFKVSERHACRLIRLQRSSQRYRHRRNEQIALRIRLKEHAAARPRFGYLRLHILLLREGWQINRKRVYRLYRLECLNCATRSLKSEFRP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
594 bp | 197 aa | 655 | 1248 | + | No |
Description : Second part of the transposase
ORF sequence :
LRHKKPKKRISALRVAHPAPQRPNECWSMDFVSDSLHDGRRFRALTIVDNVSRVSPAIEVGNSLSGRRVVDVLEGLAYTYGLPKVIQVDNGPEFTSKALD
EWAHRRKIKLQVSRPGKPTDNPFIESFNGRLRQECLDQSWFISIEDAQMKTEEWRVDYNENRPHSSLENRAPSDFLDAWNQNQQTEKLTHLLDQKTG
EWAHRRKIKLQVSRPGKPTDNPFIESFNGRLRQECLDQSWFISIEDAQMKTEEWRVDYNENRPHSSLENRAPSDFLDAWNQNQQTEKLTHLLDQKTG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1132 bp | 377 aa | 117 | 1248 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKSRFTEEQVAAAIRQAESGVPVAEICRRLGVTEVTFYRWKKQFAGMGVTELRKLRQLEDENRKLKSLVADLTLDKHMLQEVIAIKAVKPARKRQLVEF
LRVAFKVSERHACRLIRLQRSSQRYRHRRNEQIALRIRLKEHAAARPRFGYLRLHILLLREGWQINRKRVYRLYRLECLNCATRSLKKRISALRVAHPAP
QRPNECWSMDFVSDSLHDGRRFRALTIVDNVSRVSPAIEVGNSLSGRRVVDVLEGLAYTYGLPKVIQVDNGPEFTSKALDEWAHRRKIKLQVSRPGKPTD
NPFIESFNGRLRQECLDQSWFISIEDAQMKTEEWRVDYNENRPHSSLENRAPSDFLDAWNQNQQTEKLTHLLDQKTG
LRVAFKVSERHACRLIRLQRSSQRYRHRRNEQIALRIRLKEHAAARPRFGYLRLHILLLREGWQINRKRVYRLYRLECLNCATRSLKKRISALRVAHPAP
QRPNECWSMDFVSDSLHDGRRFRALTIVDNVSRVSPAIEVGNSLSGRRVVDVLEGLAYTYGLPKVIQVDNGPEFTSKALDEWAHRRKIKLQVSRPGKPTD
NPFIESFNGRLRQECLDQSWFISIEDAQMKTEEWRVDYNENRPHSSLENRAPSDFLDAWNQNQQTEKLTHLLDQKTG
Blast result :
Comments
ISGme7 is 71% aa similar to ISYpe1. There is a stop codon in ORFA, it is reconstructed by joigning 117-371; 372-694.
The third ORF is a putative ORFAB transposase reconstructed by possible -1 frameshift.
There is only one copy on the chromosome.
The third ORF is a putative ORFAB transposase reconstructed by possible -1 frameshift.
There is only one copy on the chromosome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission.
2] Muktak Aklujkar (2007) Direct submission.