ISGme8

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007517 ND Geobacter metallireducens
Geobacter metallireducens GS-15
DNA section
IS Length : 1185 bp

Ends


Left end : CTCAGTTGCTCCGTTGCTTGTATGTTTCAGTAACCGGTTATATGTTCTCCAGAATTGGACACGACAGCTTGGTCGTTGCTTGGGCCAATTGAGCCCGTCA
Right end : TCCTCAATGCCATGGTGAAAAACAACCAGAAGTGGGATCACTCGAAATTCACTCCACTTCTGCACTAATTTGTTGACTGAGAACACGGTTGCTCTGTGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTCGTCGGATCTTATCAATGATTTTCTGACAAA0

DNA sequence

CTCAGTTGCTCCGTTGCTTGTATGTTTCAGTAACCGGTTATATGTTCTCCAGAATTGGACACGACAGCTTGGTCGTTGCTTGGGCCAATTGAGCCCGTCA
CAGAGCGTAATGCGTCGTGTCCATCTTTCCTCAACCCGAACGGTTGCTTGGGCCGAAACGAGCCCGAATTTTCGCAAGAAAGGGACTGGAGAGAATATGG
AACCCAATGATGCAGTTGTTGGAGTCGACGTTAGTAAAGAGCATCTTGATGTCTACCTCATGCCAACTGGTGACCAGAAAAGGGTGACTAACGATGATGC
CGGTTGTGCTGAGCTGACGACGTGGCTCATTACGAACGCCCCTTGTCGGATTGTTCTCGAAGCCACCGGCGGCTTGGAGATGCTAGCTGTCAGCACCTTA
TCAGCAGCGGGTCTGCCAGTGGTCGTGGTTAATCCTCGGCAGGTCAGAAACTTTGCCAAAGCATGCGGGCTGCTGGCGAAGACCGATATTCTTGATGCCA
AGATCATTGCCCGATTTGCCCAAGCCATCAAGCCTGAAATCAGGCCGCTCAAGGACGAGACAAGCCAAAATCTAGCAGCACTGCTGGCCCGCCGCCGGCA
GTTGGTCGAGATGCTTGTGGCGGAAAAAAATCGCGTGATTTCCGCTGCACCTACGGTCCGCAAAGGCATCATGACCCATATTGCCTGGCTGACACAGCAG
ATCGATGACGTTGATAAAGACATCTCAACTCTTATTCAGTCCAGCGAATCCTGGAAGGCAAAAGAAGAAATCCTTACCAGTGTCAAGGGCATCGGCCCTG
TGACTGCGGCCACCATACTGGCAGCACTTCCGGAGTTGGGGACCATTTCCCGACAGCAGCTTGGCGCTCTGGTCGGAGTATGCCCCTATAATCGGGACAG
TGGCAAATTCCGTGGAAAGCGCGCAATCTCCGGTGGCAGAGCAACCGTGCGTTCTGTCCTGTACATGGCAACATTGTGTGCCGCCAGGTTTAACCCGGTT
ATAAAAGCCTTCTATCAACGCCTTACAAGCGCCGGAAAACTTCACAAAGTCGCGATCACCGCTTGCATGCGAAAACTACTCACCATCCTCAATGCCATGG
TGAAAAACAACCAGAAGTGGGATCACTCGAAATTCACTCCACTTCTGCACTAATTTGTTGACTGAGAACACGGTTGCTCTGTGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1971153+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEPNDAVVGVDVSKEHLDVYLMPTGDQKRVTNDDAGCAELTTWLITNAPCRIVLEATGGLEMLAVSTLSAAGLPVVVVNPRQVRNFAKACGLLAKTDILD
AKIIARFAQAIKPEIRPLKDETSQNLAALLARRRQLVEMLVAEKNRVISAAPTVRKGIMTHIAWLTQQIDDVDKDISTLIQSSESWKAKEEILTSVKGIG
PVTAATILAALPELGTISRQQLGALVGVCPYNRDSGKFRGKRAISGGRATVRSVLYMATLCAARFNPVIKAFYQRLTSAGKLHKVAITACMRKLLTILNA
MVKNNQKWDHSKFTPLLH

 

Blast result :
Comments
ISGme8 is 63% aa similar to ISBcen8. There are 14 copies on chromosome
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission.