ISGme8
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007517 | ND | Geobacter metallireducens | Geobacter metallireducens GS-15 |
DNA section
IS Length : 1185 bp
Ends
Left end : CTCAGTTGCTCCGTTGCTTGTATGTTTCAGTAACCGGTTATATGTTCTCCAGAATTGGACACGACAGCTTGGTCGTTGCTTGGGCCAATTGAGCCCGTCA
Right end : TCCTCAATGCCATGGTGAAAAACAACCAGAAGTGGGATCACTCGAAATTCACTCCACTTCTGCACTAATTTGTTGACTGAGAACACGGTTGCTCTGTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTCGTCGGATCTTA | TCAATGATTTTCTGACAAA | 0 |
DNA sequence
CTCAGTTGCTCCGTTGCTTGTATGTTTCAGTAACCGGTTATATGTTCTCCAGAATTGGACACGACAGCTTGGTCGTTGCTTGGGCCAATTGAGCCCGTCA
CAGAGCGTAATGCGTCGTGTCCATCTTTCCTCAACCCGAACGGTTGCTTGGGCCGAAACGAGCCCGAATTTTCGCAAGAAAGGGACTGGAGAGAATATGG
AACCCAATGATGCAGTTGTTGGAGTCGACGTTAGTAAAGAGCATCTTGATGTCTACCTCATGCCAACTGGTGACCAGAAAAGGGTGACTAACGATGATGC
CGGTTGTGCTGAGCTGACGACGTGGCTCATTACGAACGCCCCTTGTCGGATTGTTCTCGAAGCCACCGGCGGCTTGGAGATGCTAGCTGTCAGCACCTTA
TCAGCAGCGGGTCTGCCAGTGGTCGTGGTTAATCCTCGGCAGGTCAGAAACTTTGCCAAAGCATGCGGGCTGCTGGCGAAGACCGATATTCTTGATGCCA
AGATCATTGCCCGATTTGCCCAAGCCATCAAGCCTGAAATCAGGCCGCTCAAGGACGAGACAAGCCAAAATCTAGCAGCACTGCTGGCCCGCCGCCGGCA
GTTGGTCGAGATGCTTGTGGCGGAAAAAAATCGCGTGATTTCCGCTGCACCTACGGTCCGCAAAGGCATCATGACCCATATTGCCTGGCTGACACAGCAG
ATCGATGACGTTGATAAAGACATCTCAACTCTTATTCAGTCCAGCGAATCCTGGAAGGCAAAAGAAGAAATCCTTACCAGTGTCAAGGGCATCGGCCCTG
TGACTGCGGCCACCATACTGGCAGCACTTCCGGAGTTGGGGACCATTTCCCGACAGCAGCTTGGCGCTCTGGTCGGAGTATGCCCCTATAATCGGGACAG
TGGCAAATTCCGTGGAAAGCGCGCAATCTCCGGTGGCAGAGCAACCGTGCGTTCTGTCCTGTACATGGCAACATTGTGTGCCGCCAGGTTTAACCCGGTT
ATAAAAGCCTTCTATCAACGCCTTACAAGCGCCGGAAAACTTCACAAAGTCGCGATCACCGCTTGCATGCGAAAACTACTCACCATCCTCAATGCCATGG
TGAAAAACAACCAGAAGTGGGATCACTCGAAATTCACTCCACTTCTGCACTAATTTGTTGACTGAGAACACGGTTGCTCTGTGTT
CAGAGCGTAATGCGTCGTGTCCATCTTTCCTCAACCCGAACGGTTGCTTGGGCCGAAACGAGCCCGAATTTTCGCAAGAAAGGGACTGGAGAGAATATGG
AACCCAATGATGCAGTTGTTGGAGTCGACGTTAGTAAAGAGCATCTTGATGTCTACCTCATGCCAACTGGTGACCAGAAAAGGGTGACTAACGATGATGC
CGGTTGTGCTGAGCTGACGACGTGGCTCATTACGAACGCCCCTTGTCGGATTGTTCTCGAAGCCACCGGCGGCTTGGAGATGCTAGCTGTCAGCACCTTA
TCAGCAGCGGGTCTGCCAGTGGTCGTGGTTAATCCTCGGCAGGTCAGAAACTTTGCCAAAGCATGCGGGCTGCTGGCGAAGACCGATATTCTTGATGCCA
AGATCATTGCCCGATTTGCCCAAGCCATCAAGCCTGAAATCAGGCCGCTCAAGGACGAGACAAGCCAAAATCTAGCAGCACTGCTGGCCCGCCGCCGGCA
GTTGGTCGAGATGCTTGTGGCGGAAAAAAATCGCGTGATTTCCGCTGCACCTACGGTCCGCAAAGGCATCATGACCCATATTGCCTGGCTGACACAGCAG
ATCGATGACGTTGATAAAGACATCTCAACTCTTATTCAGTCCAGCGAATCCTGGAAGGCAAAAGAAGAAATCCTTACCAGTGTCAAGGGCATCGGCCCTG
TGACTGCGGCCACCATACTGGCAGCACTTCCGGAGTTGGGGACCATTTCCCGACAGCAGCTTGGCGCTCTGGTCGGAGTATGCCCCTATAATCGGGACAG
TGGCAAATTCCGTGGAAAGCGCGCAATCTCCGGTGGCAGAGCAACCGTGCGTTCTGTCCTGTACATGGCAACATTGTGTGCCGCCAGGTTTAACCCGGTT
ATAAAAGCCTTCTATCAACGCCTTACAAGCGCCGGAAAACTTCACAAAGTCGCGATCACCGCTTGCATGCGAAAACTACTCACCATCCTCAATGCCATGG
TGAAAAACAACCAGAAGTGGGATCACTCGAAATTCACTCCACTTCTGCACTAATTTGTTGACTGAGAACACGGTTGCTCTGTGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 197 | 1153 | + | No |
Chemistry : DEDD
ORF sequence :
MEPNDAVVGVDVSKEHLDVYLMPTGDQKRVTNDDAGCAELTTWLITNAPCRIVLEATGGLEMLAVSTLSAAGLPVVVVNPRQVRNFAKACGLLAKTDILD
AKIIARFAQAIKPEIRPLKDETSQNLAALLARRRQLVEMLVAEKNRVISAAPTVRKGIMTHIAWLTQQIDDVDKDISTLIQSSESWKAKEEILTSVKGIG
PVTAATILAALPELGTISRQQLGALVGVCPYNRDSGKFRGKRAISGGRATVRSVLYMATLCAARFNPVIKAFYQRLTSAGKLHKVAITACMRKLLTILNA
MVKNNQKWDHSKFTPLLH
AKIIARFAQAIKPEIRPLKDETSQNLAALLARRRQLVEMLVAEKNRVISAAPTVRKGIMTHIAWLTQQIDDVDKDISTLIQSSESWKAKEEILTSVKGIG
PVTAATILAALPELGTISRQQLGALVGVCPYNRDSGKFRGKRAISGGRATVRSVLYMATLCAARFNPVIKAFYQRLTSAGKLHKVAITACMRKLLTILNA
MVKNNQKWDHSKFTPLLH
Blast result :
Comments
ISGme8 is 63% aa similar to ISBcen8. There are 14 copies on chromosome
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission.
2] Muktak Aklujkar (2007) Direct submission.