ISGme5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007517 ND Geobacter metallireducens
Geobacter metallireducens GS-15
DNA section
IS Length : 1326 bp

Ends


IR Length : 22/24

IRL : GGTTCTTCAGGGAATTCCGGGGAAGATTAATAAACAACAACGGCAGCACT
IRR : GGTTCATCCGGGAATTCCGGGGAAAGCGGCCCTGATCTTGAGAAAGAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTGGACCTCCGTTAAATTTTTTGCTCAACTA8

DNA sequence

GGTTCTTCAGGGAATTCCGGGGAAGATTAATAAACAACAACGGCAGCACTGCGGTATCTTGATGGTTCCCCAACCAAAAAAGATCGCAGGAGGCTGCCGT
TGTCGTATTCCGATGTTATCGCAATTGCGGGAGGGTGGGAAGGATATCGTGTTGCTGGGGCACGCACTATCGTCACAAGTGATGCCAAACGGATCGAGGT
AGAACTGATTGCCCTGTCCCAGGATGAGATGGTGTGTGGCTCGTGCGGTGGGCGTTGCACAAGCGTCCATGAAACGACCAAGCGCGTAATTCGAGATTTG
CCGATTCTCGATGCTCAGACTTATCTGATCGTTCACCGCCGCAGGCTGCTGTGCCCTCAGTGTGGGCCAACGCTGGAGCGTCTGTCATGGCTGGCGAAAT
ACGCCCGCGTGACGCGCAGGCTTGCAGAGAGCGTAGCGCGACTGTGTGGTGTCGTGTCTGTGAAGCACGTGGCGCAGTATCTGGGGCTTTCTTGGGACCA
GGTGAAGGAAATCGACAAGCGCTCACTCACAGAGCGGGTCGGCACCGTCGACCTCTCAAACATCGAAGTTCTCGGGATGGATGAGTTCGCCCTTCACAAG
GGGCACCGCTATGCGACGGTTATCATCGAGCCATACCGTAAGGAAGTCTTATGGATCGGCAAAGGCAGGAGTCGCGAGAGTATCCGTCCTTTCTTCACGC
AGCTTGGCCCACATGGCTGTAAACGGCTCAAAGCGGTCGTGATGGATATGAACGCATCATATGAGGAGGAAATCAAGCAGCACTCGCCCCAGGCAGACAT
AGTCTACGACCTGTTCCATGTGGTGGCGAAGTATGGCAGGGAAGTGATCGACAGGGTGCGAGTCGATGAGGCAAACCGCCTGAAGGAAGACAAGAAGGCA
CGGAAGGTAGTCAAAACATCGCGGTGGTTGCTGCTACGAAACAGCGAGAACGTCAAGGGCGACGACATGCTTCGCCTCCAGGAACTGTTGGAGGCAAACC
GCAGCCTCCTTACGGTCTACCTGCTCAAAGACGATCTGAAGCAACTGTGGAAGTTTACCTGCATTGAAGAGGCGGGACTATTCTGGGAGCAGTGGCACCA
AAGGGCGATGGAGAGTGGAATACCGCCACTCATCCTGTTTGCCCGCCGGCTAAAGGGCTATCTCCAAGGAATCCTCAATCACTGCCTCTGGCCCCTTCAC
ACCGGAATCCTCGAAGGCATCAATAACAAGATCAAGGTGATCAAAAGAATGGCCTACGGCTTCCGGGATCACGAATACTTCTTTCTCAAGATCAGGGCCG
CTTTCCCCGGAATTCCCGGATGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa1001323+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSYSDVIAIAGGWEGYRVAGARTIVTSDAKRIEVELIALSQDEMVCGSCGGRCTSVHETTKRVIRDLPILDAQTYLIVHRRRLLCPQCGPTLERLSWLAK
YARVTRRLAESVARLCGVVSVKHVAQYLGLSWDQVKEIDKRSLTERVGTVDLSNIEVLGMDEFALHKGHRYATVIIEPYRKEVLWIGKGRSRESIRPFFT
QLGPHGCKRLKAVVMDMNASYEEEIKQHSPQADIVYDLFHVVAKYGREVIDRVRVDEANRLKEDKKARKVVKTSRWLLLRNSENVKGDDMLRLQELLEAN
RSLLTVYLLKDDLKQLWKFTCIEEAGLFWEQWHQRAMESGIPPLILFARRLKGYLQGILNHCLWPLHTGILEGINNKIKVIKRMAYGFRDHEYFFLKIRA
AFPGIPG

 

Blast result :
Comments
ISGme5 is 71% aa similar to IS1001. There are 14 copies on the chromosome
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission.