ISGme1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007517 ND Geobacter metallireducens
Geobacter metallireducens GS-15
DNA section
IS Length : 1341 bp

Ends


IR Length : 15/17

IRL : CAGGTTGTTGAAAAACTAAACCTTTTTGATTCAATAAGTTAGCGAACTGT
IRR : CAGGCCGTTGAAAAACTCCTTCATTTCCAGGGCAATCCCCTTCAAGGAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGCTTTGACAGCCTTAGAAATTGGTTAT4

DNA sequence

CAGGTTGTTGAAAAACTAAACCTTTTTGATTCAATAAGTTAGCGAACTGTGCTATATTTTTACGCGTAACAATCTGAATTTACAGGAGAAAAGTTATGCG
CGGCGCCGAGACAAAAACCGAAGCTCTGTTCTGTTATCTCTCCCCTGAGTCGTACGTCCCGAAGGACCACCCCTTGCGGTCGATCAGGGCGATGGTGGAT
AAGGCCCTTGCAGAGCTCAGCCCGCAATTCGAGGCCATGTACTCCCACACCGGCCGGCCCTCGATTCCTCCTGAGCAGTTGCTTAAAGCACTTCTGCTTC
AGGCGCTGTACACCATCAGGAGTAACCGTCTGCTGGTGGAGCAGATCAGCTACAGCATCCTGTTCCGCTGGTTTGTGGGATTGGCCCTGGACGAGAAGGT
CTGGGACCACTCCTCGTTTTCCACCAACCTGGAGCGGTTGATCGATACCGACGTGGCACGGCTGCTCTTGGCAAAAGTAGTTGAGCAGGCCCGAAGGGCA
AAGCTGTTGTCCGACGAGCACTTCAGCGTTGACGGCACCCTCATCGAGGCGTGGGCTTCTATCAAGAGCTTTCGGCCCAAGGATGGACCAAAGCCTCCAG
TGGGTCGTAACACGGAGCGTGATTTCCACGGCGAAAAGCTCAAAAACGACACCCATGCCTCCACCACCGATCCGGATGCGCGGATTGCCAGGAGAAGCTC
GGGCAAAGAGGCGAAGCTCAGTTACCACGGGCACGCTCTCATGGAGAACCGCAACGGGATCATCGTCGATGCCAGAATCACCCACGCAACCGGTACCGCT
GAGCGGGATACCGCAGTCGAGATGATCGCAGACGTCGCCGGTAACAAGCGGATCACCATGGGCGGCGACAAGGGCTACGACACCAAAGAGTGCGTCAAAG
ATCTGCGAGCACTCAAGGTAACCCCTCACATTGCTCAGAACACCGCTAACCGCCGCTCAGCCATCGATGGCAGGACTACCCGCCACGAAGGCTACAAAAC
CAGCCTGAGGATTCGCAAGCGGATCGAAGAGGCCTTCGGCTGGCTCAAGACTGTCGGCAATCTCCGCAAGACCCGGCATCGGGGAATAGCGAAAGTCGAC
TGGTACTTCACCATGGCCATTGCGGCATACAATCTGGTCCGGCTGCGCAATCTCGGGACGAAAACGGCATAATCAGGGGAATAATGCGACTCTTGGTGGC
AAAGCCCGCCCGAAAAGGCCAAATCAAGGTAAAAAGCAAAGTTTCAAAGAACGAATAGGGCGAGATCAATGCAACTATCGGCCTAAAATGATCTCCTTGA
AGGGGATTGCCCTGGAAATGAAGGAGTTTTTCAACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1077 bp358 aa961172+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGAETKTEALFCYLSPESYVPKDHPLRSIRAMVDKALAELSPQFEAMYSHTGRPSIPPEQLLKALLLQALYTIRSNRLLVEQISYSILFRWFVGLALDE
KVWDHSSFSTNLERLIDTDVARLLLAKVVEQARRAKLLSDEHFSVDGTLIEAWASIKSFRPKDGPKPPVGRNTERDFHGEKLKNDTHASTTDPDARIARR
SSGKEAKLSYHGHALMENRNGIIVDARITHATGTAERDTAVEMIADVAGNKRITMGGDKGYDTKECVKDLRALKVTPHIAQNTANRRSAIDGRTTRHEGY
KTSLRIRKRIEEAFGWLKTVGNLRKTRHRGIAKVDWYFTMAIAAYNLVRLRNLGTKTA

 

Blast result :
Comments
ISGme1 is 77% aa similar to ISGsu2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank