ISGme1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007517 | ND | Geobacter metallireducens | Geobacter metallireducens GS-15 |
DNA section
IS Length : 1341 bp
Ends
IR Length : 15/17
IRL : CAGGTTGTTGAAAAACTAAACCTTTTTGATTCAATAAGTTAGCGAACTGT
IRR : CAGGCCGTTGAAAAACTCCTTCATTTCCAGGGCAATCCCCTTCAAGGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCTTTGACAGCC | TTAG | AAATTGGTTAT | 4 |
DNA sequence
CAGGTTGTTGAAAAACTAAACCTTTTTGATTCAATAAGTTAGCGAACTGTGCTATATTTTTACGCGTAACAATCTGAATTTACAGGAGAAAAGTTATGCG
CGGCGCCGAGACAAAAACCGAAGCTCTGTTCTGTTATCTCTCCCCTGAGTCGTACGTCCCGAAGGACCACCCCTTGCGGTCGATCAGGGCGATGGTGGAT
AAGGCCCTTGCAGAGCTCAGCCCGCAATTCGAGGCCATGTACTCCCACACCGGCCGGCCCTCGATTCCTCCTGAGCAGTTGCTTAAAGCACTTCTGCTTC
AGGCGCTGTACACCATCAGGAGTAACCGTCTGCTGGTGGAGCAGATCAGCTACAGCATCCTGTTCCGCTGGTTTGTGGGATTGGCCCTGGACGAGAAGGT
CTGGGACCACTCCTCGTTTTCCACCAACCTGGAGCGGTTGATCGATACCGACGTGGCACGGCTGCTCTTGGCAAAAGTAGTTGAGCAGGCCCGAAGGGCA
AAGCTGTTGTCCGACGAGCACTTCAGCGTTGACGGCACCCTCATCGAGGCGTGGGCTTCTATCAAGAGCTTTCGGCCCAAGGATGGACCAAAGCCTCCAG
TGGGTCGTAACACGGAGCGTGATTTCCACGGCGAAAAGCTCAAAAACGACACCCATGCCTCCACCACCGATCCGGATGCGCGGATTGCCAGGAGAAGCTC
GGGCAAAGAGGCGAAGCTCAGTTACCACGGGCACGCTCTCATGGAGAACCGCAACGGGATCATCGTCGATGCCAGAATCACCCACGCAACCGGTACCGCT
GAGCGGGATACCGCAGTCGAGATGATCGCAGACGTCGCCGGTAACAAGCGGATCACCATGGGCGGCGACAAGGGCTACGACACCAAAGAGTGCGTCAAAG
ATCTGCGAGCACTCAAGGTAACCCCTCACATTGCTCAGAACACCGCTAACCGCCGCTCAGCCATCGATGGCAGGACTACCCGCCACGAAGGCTACAAAAC
CAGCCTGAGGATTCGCAAGCGGATCGAAGAGGCCTTCGGCTGGCTCAAGACTGTCGGCAATCTCCGCAAGACCCGGCATCGGGGAATAGCGAAAGTCGAC
TGGTACTTCACCATGGCCATTGCGGCATACAATCTGGTCCGGCTGCGCAATCTCGGGACGAAAACGGCATAATCAGGGGAATAATGCGACTCTTGGTGGC
AAAGCCCGCCCGAAAAGGCCAAATCAAGGTAAAAAGCAAAGTTTCAAAGAACGAATAGGGCGAGATCAATGCAACTATCGGCCTAAAATGATCTCCTTGA
AGGGGATTGCCCTGGAAATGAAGGAGTTTTTCAACGGCCTG
CGGCGCCGAGACAAAAACCGAAGCTCTGTTCTGTTATCTCTCCCCTGAGTCGTACGTCCCGAAGGACCACCCCTTGCGGTCGATCAGGGCGATGGTGGAT
AAGGCCCTTGCAGAGCTCAGCCCGCAATTCGAGGCCATGTACTCCCACACCGGCCGGCCCTCGATTCCTCCTGAGCAGTTGCTTAAAGCACTTCTGCTTC
AGGCGCTGTACACCATCAGGAGTAACCGTCTGCTGGTGGAGCAGATCAGCTACAGCATCCTGTTCCGCTGGTTTGTGGGATTGGCCCTGGACGAGAAGGT
CTGGGACCACTCCTCGTTTTCCACCAACCTGGAGCGGTTGATCGATACCGACGTGGCACGGCTGCTCTTGGCAAAAGTAGTTGAGCAGGCCCGAAGGGCA
AAGCTGTTGTCCGACGAGCACTTCAGCGTTGACGGCACCCTCATCGAGGCGTGGGCTTCTATCAAGAGCTTTCGGCCCAAGGATGGACCAAAGCCTCCAG
TGGGTCGTAACACGGAGCGTGATTTCCACGGCGAAAAGCTCAAAAACGACACCCATGCCTCCACCACCGATCCGGATGCGCGGATTGCCAGGAGAAGCTC
GGGCAAAGAGGCGAAGCTCAGTTACCACGGGCACGCTCTCATGGAGAACCGCAACGGGATCATCGTCGATGCCAGAATCACCCACGCAACCGGTACCGCT
GAGCGGGATACCGCAGTCGAGATGATCGCAGACGTCGCCGGTAACAAGCGGATCACCATGGGCGGCGACAAGGGCTACGACACCAAAGAGTGCGTCAAAG
ATCTGCGAGCACTCAAGGTAACCCCTCACATTGCTCAGAACACCGCTAACCGCCGCTCAGCCATCGATGGCAGGACTACCCGCCACGAAGGCTACAAAAC
CAGCCTGAGGATTCGCAAGCGGATCGAAGAGGCCTTCGGCTGGCTCAAGACTGTCGGCAATCTCCGCAAGACCCGGCATCGGGGAATAGCGAAAGTCGAC
TGGTACTTCACCATGGCCATTGCGGCATACAATCTGGTCCGGCTGCGCAATCTCGGGACGAAAACGGCATAATCAGGGGAATAATGCGACTCTTGGTGGC
AAAGCCCGCCCGAAAAGGCCAAATCAAGGTAAAAAGCAAAGTTTCAAAGAACGAATAGGGCGAGATCAATGCAACTATCGGCCTAAAATGATCTCCTTGA
AGGGGATTGCCCTGGAAATGAAGGAGTTTTTCAACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1077 bp | 358 aa | 96 | 1172 | + | No |
Chemistry : DDE
ORF sequence :
MRGAETKTEALFCYLSPESYVPKDHPLRSIRAMVDKALAELSPQFEAMYSHTGRPSIPPEQLLKALLLQALYTIRSNRLLVEQISYSILFRWFVGLALDE
KVWDHSSFSTNLERLIDTDVARLLLAKVVEQARRAKLLSDEHFSVDGTLIEAWASIKSFRPKDGPKPPVGRNTERDFHGEKLKNDTHASTTDPDARIARR
SSGKEAKLSYHGHALMENRNGIIVDARITHATGTAERDTAVEMIADVAGNKRITMGGDKGYDTKECVKDLRALKVTPHIAQNTANRRSAIDGRTTRHEGY
KTSLRIRKRIEEAFGWLKTVGNLRKTRHRGIAKVDWYFTMAIAAYNLVRLRNLGTKTA
KVWDHSSFSTNLERLIDTDVARLLLAKVVEQARRAKLLSDEHFSVDGTLIEAWASIKSFRPKDGPKPPVGRNTERDFHGEKLKNDTHASTTDPDARIARR
SSGKEAKLSYHGHALMENRNGIIVDARITHATGTAERDTAVEMIADVAGNKRITMGGDKGYDTKECVKDLRALKVTPHIAQNTANRRSAIDGRTTRHEGY
KTSLRIRKRIEEAFGWLKTVGNLRKTRHRGIAKVDWYFTMAIAAYNLVRLRNLGTKTA
Blast result :
Comments
ISGme1 is 77% aa similar to ISGsu2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank