ISSod22

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE014299 ND Shewanella oneidensis
Shewanella oneidensis
DNA section
IS Length : 1245 bp

Ends


IR Length : 14/22

IRL : CAGGGCGAGATCGTGAATATATTTTAACCGTTTTGAACCCAATTTGACGG
IRR : CAGGGCAACCGCATGAGTGTTTAAAATTCGTCCAGCTGCAACCCTGCTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCAGATATCGTATATATC0

DNA sequence

CAGGGCGAGATCGTGAATATATTTTAACCGTTTTGAACCCAATTTGACGGACGGTGTCGATTATGATCTTATGCTCTCTTTTTCTTATAGAGAACATCAG
AGCATGTACCTTGAAGCCTTCACGTCTCATTTCAACTCGATTGCTGACAGCCGACAATCTGCCAAAGTGACTTACCCATTGCATGATGTATTGTTCGTCA
CTCTGTGTGGTGTGATTGCTGGGGCCGAAGGCTGGTCAGAAATCCATGACTATGCTGCCGGACATCATACCTGGTTTAAAGAAAAGGGAATTCTGACCGA
AGGTGTCCCTGTCGATGACACCATTGCACGTATTATCTCTCGTATCGAACCGGAACAGTTTCGACTGTGCTTCGCCAATTGGATGCGAGCCGTCCATGAG
ATGAGTGATGGTCATCTTATTGCTATCGATGGTAAAACGCTTCGTGCCTCATACAATCGTGAAGATCGGCGCTCAACCATTCATATGGTCAATGCGTTTG
CCTGTGCCAATAAAGTGGTGCTGGGACAAGTAAAAACTGCAAATAAATCCAATGAGATAACTGCAATCCCAGCGCTGCTCCAGTTGTTAGATATAGAAGG
AGCACTGGTATCAATCGACGCCATGGGTTGCCAGACAGAGATTGCAAGGCAGATAGTCGAGCAAGGAGGTGACTACTTACTTGCTGTGAAGGTGAATCAA
AGTTCCTTGCATGAGGCCGTGGTCAGTGCTTTCAGTGAAGCGCGCAGTAATCCTCTTGATGGACTCGTTATTGAGAAAAATAGAGGTCGTATCGAGGCAA
GAGCCTACTATGTAATACCTGCAAACCAGCTCCAAGATAATTTTCCTAAGTGGATGAAATTGAACACATTAGGTATGTGTTTGAGTTATCGGCATACGAA
AGGGAAAGAGGCAGAACTGACCTACCGTTACTATATCAGTTCAGCCACACTCGATGAGCAGCTGTTAGCCAATTCAGTTCGTGGGCATTGGGGTATTGAG
AACAGCTTACACTGGGTGCTAGATGTCTCAATGAAAGAAGATAGTTGCCAGATTTACCAACATCATGGGGCAGAAAATTGGGCCATGCTTAGGCACATAT
CACTGAATATGCTTAGGGCTGAACCTTCTAAAGGAAGCATTCCAGCGAAACAGAAAAGAGCTTGGATGAAACCTGAATATTTAGAATCGGTTCTATTAGC
AGGGTTGCAGCTGGACGAATTTTAAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa1041225+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHDYAAGHHTWFKEKGILTEGVPVDDTIARIISRIEPEQFRLCFANWMRAVHEM
SDGHLIAIDGKTLRASYNREDRRSTIHMVNAFACANKVVLGQVKTANKSNEITAIPALLQLLDIEGALVSIDAMGCQTEIARQIVEQGGDYLLAVKVNQS
SLHEAVVSAFSEARSNPLDGLVIEKNRGRIEARAYYVIPANQLQDNFPKWMKLNTLGMCLSYRHTKGKEAELTYRYYISSATLDEQLLANSVRGHWGIEN
SLHWVLDVSMKEDSCQIYQHHGAENWAMLRHISLNMLRAEPSKGSIPAKQKRAWMKPEYLESVLLAGLQLDEF

 

Blast result :
Comments
ISSod22 has 44% identity to E. coli ISEc5. There is one copy of the element on the chromosome.
References
1] Romine, M. (2007) Direct Submission