ISSod22
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE014299 | ND | Shewanella oneidensis | Shewanella oneidensis |
DNA section
IS Length : 1245 bp
Ends
IR Length : 14/22
IRL : CAGGGCGAGATCGTGAATATATTTTAACCGTTTTGAACCCAATTTGACGG
IRR : CAGGGCAACCGCATGAGTGTTTAAAATTCGTCCAGCTGCAACCCTGCTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCAGATAT | CGTATATATC | 0 |
DNA sequence
CAGGGCGAGATCGTGAATATATTTTAACCGTTTTGAACCCAATTTGACGGACGGTGTCGATTATGATCTTATGCTCTCTTTTTCTTATAGAGAACATCAG
AGCATGTACCTTGAAGCCTTCACGTCTCATTTCAACTCGATTGCTGACAGCCGACAATCTGCCAAAGTGACTTACCCATTGCATGATGTATTGTTCGTCA
CTCTGTGTGGTGTGATTGCTGGGGCCGAAGGCTGGTCAGAAATCCATGACTATGCTGCCGGACATCATACCTGGTTTAAAGAAAAGGGAATTCTGACCGA
AGGTGTCCCTGTCGATGACACCATTGCACGTATTATCTCTCGTATCGAACCGGAACAGTTTCGACTGTGCTTCGCCAATTGGATGCGAGCCGTCCATGAG
ATGAGTGATGGTCATCTTATTGCTATCGATGGTAAAACGCTTCGTGCCTCATACAATCGTGAAGATCGGCGCTCAACCATTCATATGGTCAATGCGTTTG
CCTGTGCCAATAAAGTGGTGCTGGGACAAGTAAAAACTGCAAATAAATCCAATGAGATAACTGCAATCCCAGCGCTGCTCCAGTTGTTAGATATAGAAGG
AGCACTGGTATCAATCGACGCCATGGGTTGCCAGACAGAGATTGCAAGGCAGATAGTCGAGCAAGGAGGTGACTACTTACTTGCTGTGAAGGTGAATCAA
AGTTCCTTGCATGAGGCCGTGGTCAGTGCTTTCAGTGAAGCGCGCAGTAATCCTCTTGATGGACTCGTTATTGAGAAAAATAGAGGTCGTATCGAGGCAA
GAGCCTACTATGTAATACCTGCAAACCAGCTCCAAGATAATTTTCCTAAGTGGATGAAATTGAACACATTAGGTATGTGTTTGAGTTATCGGCATACGAA
AGGGAAAGAGGCAGAACTGACCTACCGTTACTATATCAGTTCAGCCACACTCGATGAGCAGCTGTTAGCCAATTCAGTTCGTGGGCATTGGGGTATTGAG
AACAGCTTACACTGGGTGCTAGATGTCTCAATGAAAGAAGATAGTTGCCAGATTTACCAACATCATGGGGCAGAAAATTGGGCCATGCTTAGGCACATAT
CACTGAATATGCTTAGGGCTGAACCTTCTAAAGGAAGCATTCCAGCGAAACAGAAAAGAGCTTGGATGAAACCTGAATATTTAGAATCGGTTCTATTAGC
AGGGTTGCAGCTGGACGAATTTTAAACACTCATGCGGTTGCCCTG
AGCATGTACCTTGAAGCCTTCACGTCTCATTTCAACTCGATTGCTGACAGCCGACAATCTGCCAAAGTGACTTACCCATTGCATGATGTATTGTTCGTCA
CTCTGTGTGGTGTGATTGCTGGGGCCGAAGGCTGGTCAGAAATCCATGACTATGCTGCCGGACATCATACCTGGTTTAAAGAAAAGGGAATTCTGACCGA
AGGTGTCCCTGTCGATGACACCATTGCACGTATTATCTCTCGTATCGAACCGGAACAGTTTCGACTGTGCTTCGCCAATTGGATGCGAGCCGTCCATGAG
ATGAGTGATGGTCATCTTATTGCTATCGATGGTAAAACGCTTCGTGCCTCATACAATCGTGAAGATCGGCGCTCAACCATTCATATGGTCAATGCGTTTG
CCTGTGCCAATAAAGTGGTGCTGGGACAAGTAAAAACTGCAAATAAATCCAATGAGATAACTGCAATCCCAGCGCTGCTCCAGTTGTTAGATATAGAAGG
AGCACTGGTATCAATCGACGCCATGGGTTGCCAGACAGAGATTGCAAGGCAGATAGTCGAGCAAGGAGGTGACTACTTACTTGCTGTGAAGGTGAATCAA
AGTTCCTTGCATGAGGCCGTGGTCAGTGCTTTCAGTGAAGCGCGCAGTAATCCTCTTGATGGACTCGTTATTGAGAAAAATAGAGGTCGTATCGAGGCAA
GAGCCTACTATGTAATACCTGCAAACCAGCTCCAAGATAATTTTCCTAAGTGGATGAAATTGAACACATTAGGTATGTGTTTGAGTTATCGGCATACGAA
AGGGAAAGAGGCAGAACTGACCTACCGTTACTATATCAGTTCAGCCACACTCGATGAGCAGCTGTTAGCCAATTCAGTTCGTGGGCATTGGGGTATTGAG
AACAGCTTACACTGGGTGCTAGATGTCTCAATGAAAGAAGATAGTTGCCAGATTTACCAACATCATGGGGCAGAAAATTGGGCCATGCTTAGGCACATAT
CACTGAATATGCTTAGGGCTGAACCTTCTAAAGGAAGCATTCCAGCGAAACAGAAAAGAGCTTGGATGAAACCTGAATATTTAGAATCGGTTCTATTAGC
AGGGTTGCAGCTGGACGAATTTTAAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 104 | 1225 | + | No |
Chemistry : Unknow
ORF sequence :
MYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHDYAAGHHTWFKEKGILTEGVPVDDTIARIISRIEPEQFRLCFANWMRAVHEM
SDGHLIAIDGKTLRASYNREDRRSTIHMVNAFACANKVVLGQVKTANKSNEITAIPALLQLLDIEGALVSIDAMGCQTEIARQIVEQGGDYLLAVKVNQS
SLHEAVVSAFSEARSNPLDGLVIEKNRGRIEARAYYVIPANQLQDNFPKWMKLNTLGMCLSYRHTKGKEAELTYRYYISSATLDEQLLANSVRGHWGIEN
SLHWVLDVSMKEDSCQIYQHHGAENWAMLRHISLNMLRAEPSKGSIPAKQKRAWMKPEYLESVLLAGLQLDEF
SDGHLIAIDGKTLRASYNREDRRSTIHMVNAFACANKVVLGQVKTANKSNEITAIPALLQLLDIEGALVSIDAMGCQTEIARQIVEQGGDYLLAVKVNQS
SLHEAVVSAFSEARSNPLDGLVIEKNRGRIEARAYYVIPANQLQDNFPKWMKLNTLGMCLSYRHTKGKEAELTYRYYISSATLDEQLLANSVRGHWGIEN
SLHWVLDVSMKEDSCQIYQHHGAENWAMLRHISLNMLRAEPSKGSIPAKQKRAWMKPEYLESVLLAGLQLDEF
Blast result :
Comments
ISSod22 has 44% identity to E. coli ISEc5. There is one copy of the element on the chromosome.
References
1] Romine, M. (2007) Direct Submission