ISSod16

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE014299 ND Shewanella oneidensis
Shewanella oneidensis MR-1
DNA section
IS Length : 1154 bp

Ends


IR Length : 28/47

IRL : AAATAGCTGTTCCAAATAGTAGATCAAAGGAAGGGAACTCAGTCCTGTTT
IRR : AAATAGCTGATCCGAATACTGCTACATTTTCGCGGTGCCGTGTCCGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNCTAGNNN0

DNA sequence

AAATAGCTGTTCCAAATAGTAGATCAAAGGAAGGGAACTCAGTCCTGTTTGAGCGATCTGATCTATCGCCAAACAAACCCACCACTCGCCGAGGACTGAG
AATGGCCATCTTACCACCACTTTGTCGCGCAGAGCGCAAACAACTACAGAAATTGCTCCATAAAACCAAGGATAAGCATTTCGCCCGACGTCTTATCGCT
ATGCTGATGCTGCATCAAGGGCAGTCGATTACCGACGTTCATCATGCTACTGGTGCTGCACGCTCCAGTATTGGTCGTTGGTTAGCTTGGTACACCGAAA
GCGGCGTTGATGGGCTTAAATCCCTGACGCTGGGACGGCCAGCAATCTTACCCATAGACCCCATATTGCTCTGTCTATCTTTGCTTATTCAGCTATGCCC
ACAGGACTTTGGCTATCAACGTAGCCGCTGGAGCAGCGAACTGCTTGCCATGGTGATTAATGCACAGCTTAAACTCAGCATCGCTGCATCAACCGTCCAT
CGATTACTACCCAAGGCGGGAATTGTCTGGCGCCGCTCAGCTCCGACATTGCGTATCAAAGACCCACACCAAGATGAGAAAATGGCCGAGATAAATCAGG
CTCTTGAGCAGTGTTGCGTCGAACATCCGGTTTTCTATGAAGATGAAGTGGACATCGACTTGAACCCAAAAATCGGGGCAGATTGGATGCCAAAAGGTCA
GCAAAAACGCGTTGTCACCCCAGGCAACAACCGTAAGCATTACATAGCAGGAGCCCTGCATGCCAGCACCGGAAAAGTGCTTTATGTGAGCAGCGATAGC
AAAGCGTCAGAGCTGTTTATTGCCATGTTGGAGAAGCTTAAGCGTCATTACCGCAAAGCCAAAACCATCACGCTCATCCTAGACAATTACATTATTCATA
AGAGCCGTAAGACCGTTGCTTGGCTCAAGCACAACCCCAAATTCAGATTATTGTTTCAACCGGTATACTCGCCGTGGGTCAACAAGATAGAGCGCTTGTG
GCTCGCACTGCATGAAACGGTAACCCGCAATCACGCTTGCAGGAACATGCGGGAACTGCTTGGCATGGTATGGCATTTTATGGGAACCGTTTCCCCATTT
CCTGGCTCCGGACACGGCACCGCGAAAATGTAGCAGTATTCGGATCAGCTATTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1021133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAILPPLCRAERKQLQKLLHKTKDKHFARRLIAMLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRPAILPIDPILLCLSLLIQLCP
QDFGYQRSRWSSELLAMVINAQLKLSIAASTVHRLLPKAGIVWRRSAPTLRIKDPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVAWLKHNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHACRNMRELLGMVWHFMGTVSPFPGSGHGTAKM

 

Blast result :
Comments
There are 3 copies of this IS element on the chromosome. ISSod16 is 78% aa similar to IS630.
References
1] Margie Romine (2007) Direct submission.