ISSod16
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE014299 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1154 bp
Ends
IR Length : 28/47
IRL : AAATAGCTGTTCCAAATAGTAGATCAAAGGAAGGGAACTCAGTCCTGTTT
IRR : AAATAGCTGATCCGAATACTGCTACATTTTCGCGGTGCCGTGTCCGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNCT | AGNNN | 0 |
DNA sequence
AAATAGCTGTTCCAAATAGTAGATCAAAGGAAGGGAACTCAGTCCTGTTTGAGCGATCTGATCTATCGCCAAACAAACCCACCACTCGCCGAGGACTGAG
AATGGCCATCTTACCACCACTTTGTCGCGCAGAGCGCAAACAACTACAGAAATTGCTCCATAAAACCAAGGATAAGCATTTCGCCCGACGTCTTATCGCT
ATGCTGATGCTGCATCAAGGGCAGTCGATTACCGACGTTCATCATGCTACTGGTGCTGCACGCTCCAGTATTGGTCGTTGGTTAGCTTGGTACACCGAAA
GCGGCGTTGATGGGCTTAAATCCCTGACGCTGGGACGGCCAGCAATCTTACCCATAGACCCCATATTGCTCTGTCTATCTTTGCTTATTCAGCTATGCCC
ACAGGACTTTGGCTATCAACGTAGCCGCTGGAGCAGCGAACTGCTTGCCATGGTGATTAATGCACAGCTTAAACTCAGCATCGCTGCATCAACCGTCCAT
CGATTACTACCCAAGGCGGGAATTGTCTGGCGCCGCTCAGCTCCGACATTGCGTATCAAAGACCCACACCAAGATGAGAAAATGGCCGAGATAAATCAGG
CTCTTGAGCAGTGTTGCGTCGAACATCCGGTTTTCTATGAAGATGAAGTGGACATCGACTTGAACCCAAAAATCGGGGCAGATTGGATGCCAAAAGGTCA
GCAAAAACGCGTTGTCACCCCAGGCAACAACCGTAAGCATTACATAGCAGGAGCCCTGCATGCCAGCACCGGAAAAGTGCTTTATGTGAGCAGCGATAGC
AAAGCGTCAGAGCTGTTTATTGCCATGTTGGAGAAGCTTAAGCGTCATTACCGCAAAGCCAAAACCATCACGCTCATCCTAGACAATTACATTATTCATA
AGAGCCGTAAGACCGTTGCTTGGCTCAAGCACAACCCCAAATTCAGATTATTGTTTCAACCGGTATACTCGCCGTGGGTCAACAAGATAGAGCGCTTGTG
GCTCGCACTGCATGAAACGGTAACCCGCAATCACGCTTGCAGGAACATGCGGGAACTGCTTGGCATGGTATGGCATTTTATGGGAACCGTTTCCCCATTT
CCTGGCTCCGGACACGGCACCGCGAAAATGTAGCAGTATTCGGATCAGCTATTT
AATGGCCATCTTACCACCACTTTGTCGCGCAGAGCGCAAACAACTACAGAAATTGCTCCATAAAACCAAGGATAAGCATTTCGCCCGACGTCTTATCGCT
ATGCTGATGCTGCATCAAGGGCAGTCGATTACCGACGTTCATCATGCTACTGGTGCTGCACGCTCCAGTATTGGTCGTTGGTTAGCTTGGTACACCGAAA
GCGGCGTTGATGGGCTTAAATCCCTGACGCTGGGACGGCCAGCAATCTTACCCATAGACCCCATATTGCTCTGTCTATCTTTGCTTATTCAGCTATGCCC
ACAGGACTTTGGCTATCAACGTAGCCGCTGGAGCAGCGAACTGCTTGCCATGGTGATTAATGCACAGCTTAAACTCAGCATCGCTGCATCAACCGTCCAT
CGATTACTACCCAAGGCGGGAATTGTCTGGCGCCGCTCAGCTCCGACATTGCGTATCAAAGACCCACACCAAGATGAGAAAATGGCCGAGATAAATCAGG
CTCTTGAGCAGTGTTGCGTCGAACATCCGGTTTTCTATGAAGATGAAGTGGACATCGACTTGAACCCAAAAATCGGGGCAGATTGGATGCCAAAAGGTCA
GCAAAAACGCGTTGTCACCCCAGGCAACAACCGTAAGCATTACATAGCAGGAGCCCTGCATGCCAGCACCGGAAAAGTGCTTTATGTGAGCAGCGATAGC
AAAGCGTCAGAGCTGTTTATTGCCATGTTGGAGAAGCTTAAGCGTCATTACCGCAAAGCCAAAACCATCACGCTCATCCTAGACAATTACATTATTCATA
AGAGCCGTAAGACCGTTGCTTGGCTCAAGCACAACCCCAAATTCAGATTATTGTTTCAACCGGTATACTCGCCGTGGGTCAACAAGATAGAGCGCTTGTG
GCTCGCACTGCATGAAACGGTAACCCGCAATCACGCTTGCAGGAACATGCGGGAACTGCTTGGCATGGTATGGCATTTTATGGGAACCGTTTCCCCATTT
CCTGGCTCCGGACACGGCACCGCGAAAATGTAGCAGTATTCGGATCAGCTATTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 102 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MAILPPLCRAERKQLQKLLHKTKDKHFARRLIAMLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRPAILPIDPILLCLSLLIQLCP
QDFGYQRSRWSSELLAMVINAQLKLSIAASTVHRLLPKAGIVWRRSAPTLRIKDPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVAWLKHNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHACRNMRELLGMVWHFMGTVSPFPGSGHGTAKM
QDFGYQRSRWSSELLAMVINAQLKLSIAASTVHRLLPKAGIVWRRSAPTLRIKDPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVAWLKHNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHACRNMRELLGMVWHFMGTVSPFPGSGHGTAKM
Blast result :
Comments
There are 3 copies of this IS element on the chromosome. ISSod16 is 78% aa similar to IS630.
References
1] Margie Romine (2007) Direct submission.