ISSod18

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE014299 ND Shewanella oneidensis
Shewanella oneidensis MR-1
DNA section
IS Length : 1308 bp

Ends


IR Length : 27/37

IRL : GAGAGTGTAAAAAGAACTGTGTAAGTGGCATTCTATCCATGTATTTGAAA
IRR : GAGACTATAAAATTTTCTGTGTAAGTGGCTGTTGATCATAACGACACACG

Insertion site


Left flankDirect repeatRight flankDR Length
CGATAATGGCGACTTACTAGGCATTGTC8

DNA sequence

GAGAGTGTAAAAAGAACTGTGTAAGTGGCATTCTATCCATGTATTTGAAAGGAATAAAAGAATGCCAGTATCAGACCAGCTTATCGATCAGTTATTAGCT
GATTACGAATCCCCACAAGACCTGCTTGGTGAGCAAGGTATCCTTAGGCAGTTGACTAAAAAACTTGCTGAGCGTGCTCTTGAAGCCGAGATGGAACTGC
ATCTTGGTTATGCCAAACATGATGCGGCAGGTTTTAACACTGGTAACTCCCGCAACGGTAAAAGCCGTAAATCAGTGCGCAGCATTCACGGCGACATTGA
GCTTGAAACACCGCGAGACCGTAATGGCAGCTTCGAGCCTAAACTGATTAAGAAAGGCGAGAAACAGCTCGGTGGCTTTGATGAGCGAATTGTCTCGCTT
TACGCCAGAGGCATGTCTACCCGTGATATCCAAGCCCACTTTGAAGAAACCTATGGTGTTGAAGTCTCGCCGACGTTTATCTCTCAGATCACCAATGCCG
TATTGGATGAGGTCAAAGCCTGGCAATTGCGGCCATTAGCACCGGTATACCCGATAGTGTATTTAGACTGTTTGGTCGTGCGTAGCCGTGATTCTGGCAG
CATCCAGAACAAATCCGTCTACCTTGCCCTTGGCGTGAACACCGATGGTGAGAAAGAGCTGCTGGGCTTATGGATAGCACAAACCGAAGGCGCTAAGTTC
TGGCTGTCGGTGATGAACGAGCTGAAAAACCGCGGTGTAGAAGATATCTTCATCGCCTGTGTTGATGGGCTAAAGGGCTTTCCCGATGCGATAGAGGCGG
TTTACCCTAAAACGCAGGTACAGCTGTGCATCGTGCATCAAATCCGCAACAGCCTGCGCTTCGTCAGTTGGAAAGAGCGTAAAGCCGTTGCAGCAGATCT
TAAAACGATTTATGGCGCAGCCACGTTGCAGCAAGCCGAACTGGCGCTGGAGCAATTTGCAAAGACGTGGGATAAGCAGCATCCAAGCATTAGCAAATCT
TGGCGTGAAAACTGGACCAGGCTTAGCGTGTTCTTCGACTATCCCCCGGAAATCCGCAAGGTGATTTACACCACCAACGCCATCGAATCACTCAATGCCA
GCCTACGTCAGGTGACCAAGACCAGACGGTCATTTCCGAGCGATGACGCGGTGCTGAAGTTACTGTATCTGGCTTTACACCAGATTGCTAAAAAGTGGAC
AATGCCACTACGAGATTGGAAGCCTGCCATGACGCAGTTTATGATCATGTACAGTGACCGTGTGTCGTTATGATCAACAGCCACTTACACAGAAAATTTT
ATAGTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa621273+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPVSDQLIDQLLADYESPQDLLGEQGILRQLTKKLAERALEAEMELHLGYAKHDAAGFNTGNSRNGKSRKSVRSIHGDIELETPRDRNGSFEPKLIKKGE
KQLGGFDERIVSLYARGMSTRDIQAHFEETYGVEVSPTFISQITNAVLDEVKAWQLRPLAPVYPIVYLDCLVVRSRDSGSIQNKSVYLALGVNTDGEKEL
LGLWIAQTEGAKFWLSVMNELKNRGVEDIFIACVDGLKGFPDAIEAVYPKTQVQLCIVHQIRNSLRFVSWKERKAVAADLKTIYGAATLQQAELALEQFA
KTWDKQHPSISKSWRENWTRLSVFFDYPPEIRKVIYTTNAIESLNASLRQVTKTRRSFPSDDAVLKLLYLALHQIAKKWTMPLRDWKPAMTQFMIMYSDR
VSL

 

Blast result :
Comments
ISSod18 is 51% aa identical and 75% aa similar to ISAs3.
References
1] Margie Romine (2007) Direct submission.