ISSod18
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE014299 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1308 bp
Ends
IR Length : 27/37
IRL : GAGAGTGTAAAAAGAACTGTGTAAGTGGCATTCTATCCATGTATTTGAAA
IRR : GAGACTATAAAATTTTCTGTGTAAGTGGCTGTTGATCATAACGACACACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGATAATGGC | GACTTACT | AGGCATTGTC | 8 |
DNA sequence
GAGAGTGTAAAAAGAACTGTGTAAGTGGCATTCTATCCATGTATTTGAAAGGAATAAAAGAATGCCAGTATCAGACCAGCTTATCGATCAGTTATTAGCT
GATTACGAATCCCCACAAGACCTGCTTGGTGAGCAAGGTATCCTTAGGCAGTTGACTAAAAAACTTGCTGAGCGTGCTCTTGAAGCCGAGATGGAACTGC
ATCTTGGTTATGCCAAACATGATGCGGCAGGTTTTAACACTGGTAACTCCCGCAACGGTAAAAGCCGTAAATCAGTGCGCAGCATTCACGGCGACATTGA
GCTTGAAACACCGCGAGACCGTAATGGCAGCTTCGAGCCTAAACTGATTAAGAAAGGCGAGAAACAGCTCGGTGGCTTTGATGAGCGAATTGTCTCGCTT
TACGCCAGAGGCATGTCTACCCGTGATATCCAAGCCCACTTTGAAGAAACCTATGGTGTTGAAGTCTCGCCGACGTTTATCTCTCAGATCACCAATGCCG
TATTGGATGAGGTCAAAGCCTGGCAATTGCGGCCATTAGCACCGGTATACCCGATAGTGTATTTAGACTGTTTGGTCGTGCGTAGCCGTGATTCTGGCAG
CATCCAGAACAAATCCGTCTACCTTGCCCTTGGCGTGAACACCGATGGTGAGAAAGAGCTGCTGGGCTTATGGATAGCACAAACCGAAGGCGCTAAGTTC
TGGCTGTCGGTGATGAACGAGCTGAAAAACCGCGGTGTAGAAGATATCTTCATCGCCTGTGTTGATGGGCTAAAGGGCTTTCCCGATGCGATAGAGGCGG
TTTACCCTAAAACGCAGGTACAGCTGTGCATCGTGCATCAAATCCGCAACAGCCTGCGCTTCGTCAGTTGGAAAGAGCGTAAAGCCGTTGCAGCAGATCT
TAAAACGATTTATGGCGCAGCCACGTTGCAGCAAGCCGAACTGGCGCTGGAGCAATTTGCAAAGACGTGGGATAAGCAGCATCCAAGCATTAGCAAATCT
TGGCGTGAAAACTGGACCAGGCTTAGCGTGTTCTTCGACTATCCCCCGGAAATCCGCAAGGTGATTTACACCACCAACGCCATCGAATCACTCAATGCCA
GCCTACGTCAGGTGACCAAGACCAGACGGTCATTTCCGAGCGATGACGCGGTGCTGAAGTTACTGTATCTGGCTTTACACCAGATTGCTAAAAAGTGGAC
AATGCCACTACGAGATTGGAAGCCTGCCATGACGCAGTTTATGATCATGTACAGTGACCGTGTGTCGTTATGATCAACAGCCACTTACACAGAAAATTTT
ATAGTCTC
GATTACGAATCCCCACAAGACCTGCTTGGTGAGCAAGGTATCCTTAGGCAGTTGACTAAAAAACTTGCTGAGCGTGCTCTTGAAGCCGAGATGGAACTGC
ATCTTGGTTATGCCAAACATGATGCGGCAGGTTTTAACACTGGTAACTCCCGCAACGGTAAAAGCCGTAAATCAGTGCGCAGCATTCACGGCGACATTGA
GCTTGAAACACCGCGAGACCGTAATGGCAGCTTCGAGCCTAAACTGATTAAGAAAGGCGAGAAACAGCTCGGTGGCTTTGATGAGCGAATTGTCTCGCTT
TACGCCAGAGGCATGTCTACCCGTGATATCCAAGCCCACTTTGAAGAAACCTATGGTGTTGAAGTCTCGCCGACGTTTATCTCTCAGATCACCAATGCCG
TATTGGATGAGGTCAAAGCCTGGCAATTGCGGCCATTAGCACCGGTATACCCGATAGTGTATTTAGACTGTTTGGTCGTGCGTAGCCGTGATTCTGGCAG
CATCCAGAACAAATCCGTCTACCTTGCCCTTGGCGTGAACACCGATGGTGAGAAAGAGCTGCTGGGCTTATGGATAGCACAAACCGAAGGCGCTAAGTTC
TGGCTGTCGGTGATGAACGAGCTGAAAAACCGCGGTGTAGAAGATATCTTCATCGCCTGTGTTGATGGGCTAAAGGGCTTTCCCGATGCGATAGAGGCGG
TTTACCCTAAAACGCAGGTACAGCTGTGCATCGTGCATCAAATCCGCAACAGCCTGCGCTTCGTCAGTTGGAAAGAGCGTAAAGCCGTTGCAGCAGATCT
TAAAACGATTTATGGCGCAGCCACGTTGCAGCAAGCCGAACTGGCGCTGGAGCAATTTGCAAAGACGTGGGATAAGCAGCATCCAAGCATTAGCAAATCT
TGGCGTGAAAACTGGACCAGGCTTAGCGTGTTCTTCGACTATCCCCCGGAAATCCGCAAGGTGATTTACACCACCAACGCCATCGAATCACTCAATGCCA
GCCTACGTCAGGTGACCAAGACCAGACGGTCATTTCCGAGCGATGACGCGGTGCTGAAGTTACTGTATCTGGCTTTACACCAGATTGCTAAAAAGTGGAC
AATGCCACTACGAGATTGGAAGCCTGCCATGACGCAGTTTATGATCATGTACAGTGACCGTGTGTCGTTATGATCAACAGCCACTTACACAGAAAATTTT
ATAGTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1212 bp | 403 aa | 62 | 1273 | + | No |
Chemistry : DDE
ORF sequence :
MPVSDQLIDQLLADYESPQDLLGEQGILRQLTKKLAERALEAEMELHLGYAKHDAAGFNTGNSRNGKSRKSVRSIHGDIELETPRDRNGSFEPKLIKKGE
KQLGGFDERIVSLYARGMSTRDIQAHFEETYGVEVSPTFISQITNAVLDEVKAWQLRPLAPVYPIVYLDCLVVRSRDSGSIQNKSVYLALGVNTDGEKEL
LGLWIAQTEGAKFWLSVMNELKNRGVEDIFIACVDGLKGFPDAIEAVYPKTQVQLCIVHQIRNSLRFVSWKERKAVAADLKTIYGAATLQQAELALEQFA
KTWDKQHPSISKSWRENWTRLSVFFDYPPEIRKVIYTTNAIESLNASLRQVTKTRRSFPSDDAVLKLLYLALHQIAKKWTMPLRDWKPAMTQFMIMYSDR
VSL
KQLGGFDERIVSLYARGMSTRDIQAHFEETYGVEVSPTFISQITNAVLDEVKAWQLRPLAPVYPIVYLDCLVVRSRDSGSIQNKSVYLALGVNTDGEKEL
LGLWIAQTEGAKFWLSVMNELKNRGVEDIFIACVDGLKGFPDAIEAVYPKTQVQLCIVHQIRNSLRFVSWKERKAVAADLKTIYGAATLQQAELALEQFA
KTWDKQHPSISKSWRENWTRLSVFFDYPPEIRKVIYTTNAIESLNASLRQVTKTRRSFPSDDAVLKLLYLALHQIAKKWTMPLRDWKPAMTQFMIMYSDR
VSL
Blast result :
Comments
ISSod18 is 51% aa identical and 75% aa similar to ISAs3.
References
1] Margie Romine (2007) Direct submission.