ISMesp1

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008254 ND Mesorhizobium sp.
Mesorhizobium sp. BNC1
DNA section
IS Length : 2601 bp

Ends


IR Length : 30/33

IRL : CCTAATTATATACTTGACAAAGTACGGCCGATTTCATAGGGTTGGCCATA
IRR : CCTAATTATATACATGACAAAGTAAGGTCGATTCGAGTATTGTGCTTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GACCGCCGTCACGGCGTCAAGGACTTTTTTCCTAACAACGAAAGTCCG8

DNA sequence

CCTAATTATATACTTGACAAAGTACGGCCGATTTCATAGGGTTGGCCATAGAGAGGGCAGACCCATGAAACTTGACCATCCGATCTTCACCAACGTTGAC
GCAGCCCGCGAGCACCTTAAGGCGCAGCGTTGGCCGCATGGTCCCGTCTGCCCGCATTGTGGCAACACCGACCCTGCCCGCATCACGAAGATGGAAGGCA
AGGCGCATCGCCCCGGCCTCTACAACTGCATGGAATGCCGCGAACAGTTCACCGTCACCGTGGGAACCGTATTCGAGCGTTCCAAGATCGCTCTTAACAA
ATGGCTGCTGGCAACGTTCCTCATGGCTTCCTCTAAGAAGGGCATGAGCGCGCACCAGCTTCACCGTATGCTCGGCGTCACCTACAAGACCGCATGGTTC
ATGGCGCATCGCATCCGTGAGGCCATGAAGGAAGACGTGAAGTCCTCCGGCCCGCTCGGCGGCGAAGGCAAGACCGTTGAGGCCGACGAGATGTACATCG
GCAAGCGTGAGACGCCTCGCAAGCTCGCTCGTGGCCGCATCGCCAACCCCACCAAATCAGGCAAGGCAGGCGGCGCACAGAAGCGCATCGTGGTTGGCCT
TGTGGAGCGCGGCGGCAAGTCCCGTATGTTCCACCTGAACGATGCCACGAAAGAGACCGTGCGCGACGTGCTGGTGCGTAATGCAGACCGCAAGTCCATC
CTCTACACTGACGAAAGCCGTCTCTACACTCGCACTGGTGAGGAATATGCCGGTCACAAGACCACCAAGCATTCCGCTGGCGAGTACGCCCGCCGCGAAG
GCGACGTGGTTGTTCACTCCAAATACGATTGAAAGCGTGTTCTCAGTGATCAAGCGTGGCATGGTTGGCGTCTACCAGCATTGCGGCGAAGCCCATCTGC
ACCGGTATCTCGCTGAGTTCGATTTCCGTTACAATCGCCGTACGGCGCTCAAGATCACCGATGCGGAGCGCACCGATCAGTTGCTTGCCATGATCGAAGG
CAAGCGCCTCACCTATCGGCGGATTGGTGAAGCCGATCACGCCTAAGCAGAAGGCGCGAAGGCTTCTCCGGCTAAGGAAGCGATCAAAGCTCTAGCCGGG
GCCAAATTCCTCAGCCGCTGTCGGATAAGGCTCAAGGCCCAGCCTTATTCGCATGGCAGGTAGAGAGACTTGAAGGGCATCCGCCATAGCTTTCGGCGTG
GTTTTCCCTTCCGCCCTCAGGCGACTGATCAGATCGTAGGGCATTAGCAGGTTGGCCGCGAAGCGGTTTGCTTCCGTCTCCTCGCGCGGGCCTATACTCG
TGTTGTGGTAGCGCCCCGCGCTCGTGCTGCGATAAGCCCGATCATCGTCAATCCCGGTGCCAATCAGGTGGCGGTGATGGAAGAAATGCCCCAACTCATG
TGCTATCGTAAACCTACGGCGGCGCTCACCATGGGTGGCGTTCACATTGATCTGGTAACGGCCCTCACTCACGGGGACCAATTCACCGGAAACGTCATCA
GCCAACCATGCAGAATGAACGCGGATGCCGAGTTCACGGCAAAGGCCCTCCAGATCTACCGGATAGCTACTCTGCGCCCTCTTTACGGCGCTTATCATCG
TCGTCACTGACAACCTCCTTCGCCGTCACTTCTGCGATCTCGTTGGCCTGCTCCGAGCTAACAGAGTTCTTCACAAGCTCCATGTATTCGCCAATTAATG
TAGGTAGCAGCGTCTCCATTTTGGAGATCGCCAAATCTTCGACTCTCCGAGCGGCGTCCTTAAGCGCTTCCTTGGCCTCTTTCTCTGCTATCGTTTTTGC
CCGATGCTGCACAAAGAAAAAGAGCGGGAACGCAGCTAACGCGAGAATCAGCGCCAACACAGCTAGCACGGACGATAGAAAATCGAGGCGTCCTATTTGT
GACGCATATTCGATCACGTCTCTTGCAGCTTCCTCTGCGCCCATCCCGATTACCCCCATCTATCGGTTATGACGCTGGAAAGGTTACTATTCAACTACGC
GAAGCGGACGGGTTGCTTTTGGAGTCCTGTTTGGCGCGGTTGCTGCGGGGTTTATCCTTCGCCGCCTTCTCGTGCGGCTTCGGTGGCGTCTTGAGCATCC
GCTTTAGCGTCTCGTTGAAACGCTTCTCATCGCTCTGGGGGCGCTCTTTATCTTCGGCCATTCCCCGATATCCACATTAGTGACACACAATATGCAGCGT
TTCTGGAAGCAATCGGGAACGACTGCTTGACGCCCGAAAGCGAGTCGCCTTTTAGTTGATAGGCTTGGCGCGACGGGACCGGGATTTTGCGGGTGCATCC
GCAGAAATCTCCCGGTCGCCATCTTGGCCCGCTAGCTGGCGCTACCCGCTACGGGTGCCTTCGGAGATGCCGTCGATCTCCGTCGTATCGGTGGGGCCGT
AAGGTTGGTACCTTGGTCGCGGCTTGTCATCCTGACTTTCGGGTTCGATTCCCGACGGCTCCACCATCTCTACAATAGGCGTTTTCGCCTTTTTGCCAAT
GGGGCAAATGCGCTCCATCTTAAAAGTTCCACACATTCCGGCCTGTCACGCACCAAGCACAATACTCGAATCGACCTTACTTTGTCATGTATATAATTAG
G
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
982 bp327 aa651046+No
ORF function : Transposase
Description :

ORF sequence :

MKLDHPIFTNVDAAREHLKAQRWPHGPVCPHCGNTDPARITKMEGKAHRPGLYNCMECREQFTVTVGTVFERSKIALNKWLLATFLMASSKKGMSAHQLH
RMLGVTYKTAWFMAHRIREAMKEDVKSSGPLGGEGKTVEADEMYIGKRETPRKLARGRIANPTKSGKAGGAQKRIVVGLVERGGKSRMFHLNDATKETVR
DVLVRNADRKSILYTDESRLYTRTGEEYAGHKTTKHSAGEYARREGDVVVHTPNTIESVFSVIKRGMVGVYQHCGEAHLHRYLAEFDFRYNRRTALKITD
AERTDQLLAMIEGKRLTYRRIGEADHA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
507 bp168 aa10921598+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MISAVKRAQSSYPVDLEGLCRELGIRVHSAWLADDVSGELVPVSEGRYQINVNATHGERRRRFTIAHELGHFFHHRHLIGTGIDDDRAYRSTSAGRYHNT
SIGPREETEANRFAANLLMPYDLISRLRAEGKTTPKAMADALQVSLPAMRIRLGLEPYPTAAEEFGPG

 

Blast result :
Comments
The transposase is in silico reconstructed by join (65-817; 818-1046).
The second ORF is a passenger ORF annotated as "Protein of unknown function DUF955".
ISMesp1 is 68% aa similar to ISNwi1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. US DOE Joint Genome Institute (2006) Direct submission GenBank)