ISPssp2
- Family IS1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009524 | ND | Psychrobacter sp. | Psychrobacter sp. |
DNA section
IS Length : 789 bp
Ends
IR Length : 23
IRL : GGTGGTGGTTCAAAAAGTAGGCTGGGAAAAAAACAGGCTGAGAAATTGAT
IRR : GGTGGTGGTTCAAAAAGTAGGCTAAATTAAACATACCCATGATTGATGTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGCAAAGCG | GATATTTT | TATCAAAACCTGTGA | 8 |
DNA sequence
GGTGGTGGTTCAAAAAGTAGGCTGGGAAAAAAACAGGCTGAGAAATTGATAAAATAGTGAAATGCACATCACACTATACATCAAATGCCCAGCCTGTCTA
AGTGACAATATAAAGAAAAATGGCTTCAAAAGCTATGGTAAACAAAACTATAAATGCAAAGACTGCAAACGGCAGTTTATTGGAGACCATGCCTTAACGT
ACCAAGGATGTCACTCCCAAAAAGATAGCAAAATACGATATCTTATGGTTCGAGGCAGTGGCATAAAAGACATCGCTTGCGTTGAGAGAATCAGCAAAGG
CAAAGTACTAGCCACCCTAAAAAAGTGTCACTACCCAATAACCCCCAAGCAAAGGCAATACGACTGTCTTGAAATTGATGAGCTTTGGACATTCGTAGGT
AAAAAAACCAACAAACAATGGCTAATTTATGCCTATCACCGTGACACAGGTGAAATTGTTGCCTATGTGTGGGGAAAACGAGACCTTAACACTGTCAAAA
AGCTTAAAGCTAAGCTGAAAGCCCTAGGCGTAAGTTGTGCTAGAATCGCTAGTGATACCTGGGATAGCTTTGTTACTGGTTTTAAGGGCTTTACCCAAGT
CATTGGCAAGTTTTTCACGGTCGGCATTGAAGGTAATAATTGCACTATCAGACATCGAGTAAGGCGAGCATTTAGGCGAAGTTGTAACTTTTCTAAAAAA
CTGGAAAATCACTTTAAAGCCTTTGATTTAGCTTTCTTTTACATCAATCATGGGTATGTTTAATTTAGCCTACTTTTTGAACCACCACC
AGTGACAATATAAAGAAAAATGGCTTCAAAAGCTATGGTAAACAAAACTATAAATGCAAAGACTGCAAACGGCAGTTTATTGGAGACCATGCCTTAACGT
ACCAAGGATGTCACTCCCAAAAAGATAGCAAAATACGATATCTTATGGTTCGAGGCAGTGGCATAAAAGACATCGCTTGCGTTGAGAGAATCAGCAAAGG
CAAAGTACTAGCCACCCTAAAAAAGTGTCACTACCCAATAACCCCCAAGCAAAGGCAATACGACTGTCTTGAAATTGATGAGCTTTGGACATTCGTAGGT
AAAAAAACCAACAAACAATGGCTAATTTATGCCTATCACCGTGACACAGGTGAAATTGTTGCCTATGTGTGGGGAAAACGAGACCTTAACACTGTCAAAA
AGCTTAAAGCTAAGCTGAAAGCCCTAGGCGTAAGTTGTGCTAGAATCGCTAGTGATACCTGGGATAGCTTTGTTACTGGTTTTAAGGGCTTTACCCAAGT
CATTGGCAAGTTTTTCACGGTCGGCATTGAAGGTAATAATTGCACTATCAGACATCGAGTAAGGCGAGCATTTAGGCGAAGTTGTAACTTTTCTAAAAAA
CTGGAAAATCACTTTAAAGCCTTTGATTTAGCTTTCTTTTACATCAATCATGGGTATGTTTAATTTAGCCTACTTTTTGAACCACCACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 702 bp | 233 aa | 62 | 763 | + | No |
Chemistry : DDE
ORF sequence :
MHITLYIKCPACLSDNIKKNGFKSYGKQNYKCKDCKRQFIGDHALTYQGCHSQKDSKIRYLMVRGSGIKDIACVERISKGKVLATLKKCHYPITPKQRQY
DCLEIDELWTFVGKKTNKQWLIYAYHRDTGEIVAYVWGKRDLNTVKKLKAKLKALGVSCARIASDTWDSFVTGFKGFTQVIGKFFTVGIEGNNCTIRHRV
RRAFRRSCNFSKKLENHFKAFDLAFFYINHGYV
DCLEIDELWTFVGKKTNKQWLIYAYHRDTGEIVAYVWGKRDLNTVKKLKAKLKALGVSCARIASDTWDSFVTGFKGFTQVIGKFFTVGIEGNNCTIRHRV
RRAFRRSCNFSKKLENHFKAFDLAFFYINHGYV
Blast result :
Comments
ISPssp2 is 82% aa similar to ISPa14.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedje,J. and Richardson,P. US DOE Joint Genome Institute. (2003) Direct submission GenBank.