ISPla1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAWJ01000001.1 | ND | Parvibaculum lavamentivorans | Parvibaculum lavamentivorans DS-1 |
DNA section
IS Length : 1132 bp
Ends
IR Length : 25
IRL : GGCGCAATTCTACTTAAGTGTGGATGAGCGCCAGAATGTATTGTTTTAGA
IRR : GGCGCAATTCTACTTAAGTGTGGATAACGCCTCATCGATGAGGGCCTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTCCACGTCAAAAACTTT | TTTTCTTTTCATTCCGGATC | 0 | |
CCAGGCGATTGATTTTCTTT | AATCAAAAAACAGGTGTCAT | 0 | |
GTTGCTGGGGTAAATCAAAA | AAAACTTTATCCACAATCGC | 0 |
DNA sequence
GGCGCAATTCTACTTAAGTGTGGATGAGCGCCAGAATGTATTGTTTTAGAAAGGTTTGGGCCATAGCGTTGTCTCTCCGCTTACGGAGGGGCCCATGGAC
GCCGTCCGGTTCGAACGCCTGAAGGCGCGAGTTGCGAGAGAACTGACGCCCGAGCAGTGCGTCGAGCTCGGGGAGGTGGTCCAGGCCGCCGCCGCATCGC
GGCTGGCCGATGTCGCGCTTGCGCGCCGTTCGGCGGCCGTGAGCAGCCGACGCGGATGTCCGCATTGCGGTCATGACGACATCGTGAAACACGGCCGCGA
TCGCGGAGGCAGGCAGCGATTTCGCTGCCGCCGGAGCGGCTCATCCGGCTGCGGCCAAACCTTCAACGCCCTCACCGGCACCGCCTTCACCCGTATGCGC
AAGCCGGAGAAGTGGGCTGCCTACGCCCGCATGATGGCCACCGGCTTCAAGTCGGTCGACGACGTGAAGACGAGCGGGCTTGGCATCTCGCGGCTGACCG
CCTGGCGCTGGCGTCATCGCCTCTTGCGCGCCCAGGCGCTGCGGCAGGCCGAACGGGTGGGAGGCGTCATCGAGGCCGATGAAACCTACTTTTTGAGTTC
CTACAAGGGACACCGGGGCTGGCAGAACGGGAATCCGCCGGAGAACCGCCCGCCGCGCTACCGCGGAGGCCCGGCCATCAACAGGGGACTCTCCAGCGAG
CAAATCCCCGTGCTCACGGCGCTCGACAACGCCGGCGGCATCATCGAGGAAGTGCTGCCAAACCGCGCCGCCATCGCTCCCGCGCTTCAGGGGCGTATCG
CGCCGGGCTCCGTTCTCTGCTCCGACGGGCACAAGGCCTATGTCAGCGCAGCGGTGAAAGCGGGCTCGGAACATCGCCGCATCATGACCCCGAAGAAGAC
GCAGGCAACGAAGGCCGTTGGCGGAAAACCTCGCCGCCCCGGACGGCTCGGGCTCGGTCATGTGAATGCCCATCACGAGCGCACGAAGACCTTCGTCAAC
CGGCAGGTGCGCGGCGTCTCGACCCGGCATCTTCCGTTCTATCTCGGCTGGCTTCGGGCGCTCCGGAGGCCCGACTTCTCGCCGGAGGCCCTCATCGATG
AGGCGTTATCCACACTTAAGTAGAATTGCGCC
GCCGTCCGGTTCGAACGCCTGAAGGCGCGAGTTGCGAGAGAACTGACGCCCGAGCAGTGCGTCGAGCTCGGGGAGGTGGTCCAGGCCGCCGCCGCATCGC
GGCTGGCCGATGTCGCGCTTGCGCGCCGTTCGGCGGCCGTGAGCAGCCGACGCGGATGTCCGCATTGCGGTCATGACGACATCGTGAAACACGGCCGCGA
TCGCGGAGGCAGGCAGCGATTTCGCTGCCGCCGGAGCGGCTCATCCGGCTGCGGCCAAACCTTCAACGCCCTCACCGGCACCGCCTTCACCCGTATGCGC
AAGCCGGAGAAGTGGGCTGCCTACGCCCGCATGATGGCCACCGGCTTCAAGTCGGTCGACGACGTGAAGACGAGCGGGCTTGGCATCTCGCGGCTGACCG
CCTGGCGCTGGCGTCATCGCCTCTTGCGCGCCCAGGCGCTGCGGCAGGCCGAACGGGTGGGAGGCGTCATCGAGGCCGATGAAACCTACTTTTTGAGTTC
CTACAAGGGACACCGGGGCTGGCAGAACGGGAATCCGCCGGAGAACCGCCCGCCGCGCTACCGCGGAGGCCCGGCCATCAACAGGGGACTCTCCAGCGAG
CAAATCCCCGTGCTCACGGCGCTCGACAACGCCGGCGGCATCATCGAGGAAGTGCTGCCAAACCGCGCCGCCATCGCTCCCGCGCTTCAGGGGCGTATCG
CGCCGGGCTCCGTTCTCTGCTCCGACGGGCACAAGGCCTATGTCAGCGCAGCGGTGAAAGCGGGCTCGGAACATCGCCGCATCATGACCCCGAAGAAGAC
GCAGGCAACGAAGGCCGTTGGCGGAAAACCTCGCCGCCCCGGACGGCTCGGGCTCGGTCATGTGAATGCCCATCACGAGCGCACGAAGACCTTCGTCAAC
CGGCAGGTGCGCGGCGTCTCGACCCGGCATCTTCCGTTCTATCTCGGCTGGCTTCGGGCGCTCCGGAGGCCCGACTTCTCGCCGGAGGCCCTCATCGATG
AGGCGTTATCCACACTTAAGTAGAATTGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 95 | 1123 | + | No |
Chemistry : DDE
ORF sequence :
MDAVRFERLKARVARELTPEQCVELGEVVQAAAASRLADVALARRSAAVSSRRGCPHCGHDDIVKHGRDRGGRQRFRCRRSGSSGCGQTFNALTGTAFTR
MRKPEKWAAYARMMATGFKSVDDVKTSGLGISRLTAWRWRHRLLRAQALRQAERVGGVIEADETYFLSSYKGHRGWQNGNPPENRPPRYRGGPAINRGLS
SEQIPVLTALDNAGGIIEEVLPNRAAIAPALQGRIAPGSVLCSDGHKAYVSAAVKAGSEHRRIMTPKKTQATKAVGGKPRRPGRLGLGHVNAHHERTKTF
VNRQVRGVSTRHLPFYLGWLRALRRPDFSPEALIDEALSTLK
MRKPEKWAAYARMMATGFKSVDDVKTSGLGISRLTAWRWRHRLLRAQALRQAERVGGVIEADETYFLSSYKGHRGWQNGNPPENRPPRYRGGPAINRGLS
SEQIPVLTALDNAGGIIEEVLPNRAAIAPALQGRIAPGSVLCSDGHKAYVSAAVKAGSEHRRIMTPKKTQATKAVGGKPRRPGRLGLGHVNAHHERTKTF
VNRQVRGVSTRHLPFYLGWLRALRRPDFSPEALIDEALSTLK
Blast result :
Comments
ISPla1 is 50% aa similar to ISPna2.
There are exchange of DR between the three copies :
CPL(1609679-1610810) : GGCTCCACGTCAAAAACTTT ( ) TTTTCTTTTCATTCCGGATC
CPL(3250267-3251398) : CCAGGCGATTGATTTTCTTT ( ) AATCAAAAAACAGGTGTCAT
3812982-3814113 : GTTGCTGGGGTAAATCAAAA ( ) AAAACTTTATCCACAATCGC
There are exchange of DR between the three copies :
CPL(1609679-1610810) : GGCTCCACGTCAAAAACTTT ( ) TTTTCTTTTCATTCCGGATC
CPL(3250267-3251398) : CCAGGCGATTGATTTTCTTT ( ) AATCAAAAAACAGGTGTCAT
3812982-3814113 : GTTGCTGGGGTAAATCAAAA ( ) AAAACTTTATCCACAATCGC
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute (JGI-PGF)(2007) Direct submission GenBank.