ISPla1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAWJ01000001.1 ND Parvibaculum lavamentivorans
Parvibaculum lavamentivorans DS-1
DNA section
IS Length : 1132 bp

Ends


IR Length : 25

IRL : GGCGCAATTCTACTTAAGTGTGGATGAGCGCCAGAATGTATTGTTTTAGA
IRR : GGCGCAATTCTACTTAAGTGTGGATAACGCCTCATCGATGAGGGCCTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTCCACGTCAAAAACTTTTTTTCTTTTCATTCCGGATC0
CCAGGCGATTGATTTTCTTTAATCAAAAAACAGGTGTCAT0
GTTGCTGGGGTAAATCAAAAAAAACTTTATCCACAATCGC0

DNA sequence

GGCGCAATTCTACTTAAGTGTGGATGAGCGCCAGAATGTATTGTTTTAGAAAGGTTTGGGCCATAGCGTTGTCTCTCCGCTTACGGAGGGGCCCATGGAC
GCCGTCCGGTTCGAACGCCTGAAGGCGCGAGTTGCGAGAGAACTGACGCCCGAGCAGTGCGTCGAGCTCGGGGAGGTGGTCCAGGCCGCCGCCGCATCGC
GGCTGGCCGATGTCGCGCTTGCGCGCCGTTCGGCGGCCGTGAGCAGCCGACGCGGATGTCCGCATTGCGGTCATGACGACATCGTGAAACACGGCCGCGA
TCGCGGAGGCAGGCAGCGATTTCGCTGCCGCCGGAGCGGCTCATCCGGCTGCGGCCAAACCTTCAACGCCCTCACCGGCACCGCCTTCACCCGTATGCGC
AAGCCGGAGAAGTGGGCTGCCTACGCCCGCATGATGGCCACCGGCTTCAAGTCGGTCGACGACGTGAAGACGAGCGGGCTTGGCATCTCGCGGCTGACCG
CCTGGCGCTGGCGTCATCGCCTCTTGCGCGCCCAGGCGCTGCGGCAGGCCGAACGGGTGGGAGGCGTCATCGAGGCCGATGAAACCTACTTTTTGAGTTC
CTACAAGGGACACCGGGGCTGGCAGAACGGGAATCCGCCGGAGAACCGCCCGCCGCGCTACCGCGGAGGCCCGGCCATCAACAGGGGACTCTCCAGCGAG
CAAATCCCCGTGCTCACGGCGCTCGACAACGCCGGCGGCATCATCGAGGAAGTGCTGCCAAACCGCGCCGCCATCGCTCCCGCGCTTCAGGGGCGTATCG
CGCCGGGCTCCGTTCTCTGCTCCGACGGGCACAAGGCCTATGTCAGCGCAGCGGTGAAAGCGGGCTCGGAACATCGCCGCATCATGACCCCGAAGAAGAC
GCAGGCAACGAAGGCCGTTGGCGGAAAACCTCGCCGCCCCGGACGGCTCGGGCTCGGTCATGTGAATGCCCATCACGAGCGCACGAAGACCTTCGTCAAC
CGGCAGGTGCGCGGCGTCTCGACCCGGCATCTTCCGTTCTATCTCGGCTGGCTTCGGGCGCTCCGGAGGCCCGACTTCTCGCCGGAGGCCCTCATCGATG
AGGCGTTATCCACACTTAAGTAGAATTGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa951123+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDAVRFERLKARVARELTPEQCVELGEVVQAAAASRLADVALARRSAAVSSRRGCPHCGHDDIVKHGRDRGGRQRFRCRRSGSSGCGQTFNALTGTAFTR
MRKPEKWAAYARMMATGFKSVDDVKTSGLGISRLTAWRWRHRLLRAQALRQAERVGGVIEADETYFLSSYKGHRGWQNGNPPENRPPRYRGGPAINRGLS
SEQIPVLTALDNAGGIIEEVLPNRAAIAPALQGRIAPGSVLCSDGHKAYVSAAVKAGSEHRRIMTPKKTQATKAVGGKPRRPGRLGLGHVNAHHERTKTF
VNRQVRGVSTRHLPFYLGWLRALRRPDFSPEALIDEALSTLK

 

Blast result :
Comments
ISPla1 is 50% aa similar to ISPna2.
There are exchange of DR between the three copies :
CPL(1609679-1610810) : GGCTCCACGTCAAAAACTTT ( ) TTTTCTTTTCATTCCGGATC
CPL(3250267-3251398) : CCAGGCGATTGATTTTCTTT ( ) AATCAAAAAACAGGTGTCAT
3812982-3814113 : GTTGCTGGGGTAAATCAAAA ( ) AAAACTTTATCCACAATCGC
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute (JGI-PGF)(2007) Direct submission GenBank.