ISCte4

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUJ01000001 ND Comamonas testosteroni
Comamonas testosteroni KF-1
DNA section
IS Length : 1025 bp

Ends


IR Length : 26/48

IRL : TGTGATGTCTCAATAGGTTGTTCACCCGAATGGGTCTGGGAAACTGGAGT
IRR : TGTCGAGTTGCAATAGGTTATTCCCGCTGAGTCGGGAAGCTGGTGGCCTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGCCCCCTCGCTAGCGCACACCAGA6

DNA sequence

TGTGATGTCTCAATAGGTTGTTCACCCGAATGGGTCTGGGAAACTGGAGTTACCACGCTTCAGGATCGCAGAGGAATCCCACCGGATGAACAGCCATAAG
AATGCCAGATTGACATTGGAAGGTCGCAAGTTGCTTGTCCAACGCATTGCAGGAATGGGGCTGATGCCTGCCGCCGAGGCGGCAGGCATCAGCCCGCGCA
CCGCGCGCAAGTGGCTCAAGCGCTTCCAGGAGGACGGCGTGCAGGGCCTGCACGATCGCAGCTCTCGCCCGGCCAGGACGCGCACGAACCTGGACGCTGC
GCTGCACGAGCGCATCGAGCAATTGCGCCGCTCGCGCATGCCCATGCGCCGCATCGCCACCATCGTGGGGCGCAGCGTGTCCACGGTCAGCCGCCTGCTC
GCACGCCTGGGGCTTTCCAGCCTGAAGGCACTCGACCCTGTTGCGCCCGTCGTTCGCTACGAGCGAGAAGCGCCGGGCGAGCTGCTGCATATCGACACCA
AGAAGCTCGGGCGCATCGTGCAGCCCAGCCACCGCGTCACAGGCGATCGTCGCGATGCCACGCGAGGCGCAGGCTGGGAGTTCGCTCACGTGGCCATTGA
CGATCACTCGCGAGCGGGCTTCGTGCAGATGCGCGACGACGAGCGCAAGGGCTCGGCCGTGGCGTTCCTGCAGGCGGCCGTGGCTCACTACGCGGCCTTG
GGCGTGACCATCAAGCGCCTGATCACCGACAACGGCTCGGCCTATCGCTCGCGGCTGTTCGCCAAGACTTGCCAGGCACTGGGCATCAAACATACCTTCA
CCAAGCCCTATCGCCCACAGACCAATGGCAAGGCCGAGCGATTCATCCAGACCTGCCTGCGCGAGTGGGCCTATGGCCGTGTCTGGGCCAACAGCAAAGA
ACGCACGACATGGCTGCCTGCGTTTCTGAGCTACTACAACGCCAGGAGGCCGCACTCCGCATTGGGCTACAGGCCACCAGCTTCCCGACTCAGCGGGAAT
AACCTATTGCAACTCGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
934 bp312 aa921025+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNSHKNARLTLEGRKLLVQRIAGMGLMPAAEAAGISPRTARKWLKRFQEDGVQGLHDRSSRPARTRTNLDAALHERIEQLRRSRMPMRRIATIVGRSVST
VSRLLARLGLSSLKALDPVAPVVRYEREAPGELLHIDTKKLGRIVQPSHRVTGDRRDATRGAGWEFAHVAIDDHSRAGFVQMRDDERKGSAVAFLQAAVA
HYAALGVTIKRLITDNGSAYRSRLFAKTCQALGIKHTFTKPYRPQTNGKAERFIQTCLREWAYGRVWANSKERTTWLPAFLSYYNARRPHSALGYRPPAS
RLSGNNLLQLDS

 

Blast result :
Comments
ISCte4 is 68% aa similar to IS481. The stop codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.(2006) Direct Submission Genbank.