ISCte4
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUJ01000001 | ND | Comamonas testosteroni | Comamonas testosteroni KF-1 |
DNA section
IS Length : 1025 bp
Ends
IR Length : 26/48
IRL : TGTGATGTCTCAATAGGTTGTTCACCCGAATGGGTCTGGGAAACTGGAGT
IRR : TGTCGAGTTGCAATAGGTTATTCCCGCTGAGTCGGGAAGCTGGTGGCCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGCCCCCTC | GCTAGC | GCACACCAGA | 6 |
DNA sequence
TGTGATGTCTCAATAGGTTGTTCACCCGAATGGGTCTGGGAAACTGGAGTTACCACGCTTCAGGATCGCAGAGGAATCCCACCGGATGAACAGCCATAAG
AATGCCAGATTGACATTGGAAGGTCGCAAGTTGCTTGTCCAACGCATTGCAGGAATGGGGCTGATGCCTGCCGCCGAGGCGGCAGGCATCAGCCCGCGCA
CCGCGCGCAAGTGGCTCAAGCGCTTCCAGGAGGACGGCGTGCAGGGCCTGCACGATCGCAGCTCTCGCCCGGCCAGGACGCGCACGAACCTGGACGCTGC
GCTGCACGAGCGCATCGAGCAATTGCGCCGCTCGCGCATGCCCATGCGCCGCATCGCCACCATCGTGGGGCGCAGCGTGTCCACGGTCAGCCGCCTGCTC
GCACGCCTGGGGCTTTCCAGCCTGAAGGCACTCGACCCTGTTGCGCCCGTCGTTCGCTACGAGCGAGAAGCGCCGGGCGAGCTGCTGCATATCGACACCA
AGAAGCTCGGGCGCATCGTGCAGCCCAGCCACCGCGTCACAGGCGATCGTCGCGATGCCACGCGAGGCGCAGGCTGGGAGTTCGCTCACGTGGCCATTGA
CGATCACTCGCGAGCGGGCTTCGTGCAGATGCGCGACGACGAGCGCAAGGGCTCGGCCGTGGCGTTCCTGCAGGCGGCCGTGGCTCACTACGCGGCCTTG
GGCGTGACCATCAAGCGCCTGATCACCGACAACGGCTCGGCCTATCGCTCGCGGCTGTTCGCCAAGACTTGCCAGGCACTGGGCATCAAACATACCTTCA
CCAAGCCCTATCGCCCACAGACCAATGGCAAGGCCGAGCGATTCATCCAGACCTGCCTGCGCGAGTGGGCCTATGGCCGTGTCTGGGCCAACAGCAAAGA
ACGCACGACATGGCTGCCTGCGTTTCTGAGCTACTACAACGCCAGGAGGCCGCACTCCGCATTGGGCTACAGGCCACCAGCTTCCCGACTCAGCGGGAAT
AACCTATTGCAACTCGACA
AATGCCAGATTGACATTGGAAGGTCGCAAGTTGCTTGTCCAACGCATTGCAGGAATGGGGCTGATGCCTGCCGCCGAGGCGGCAGGCATCAGCCCGCGCA
CCGCGCGCAAGTGGCTCAAGCGCTTCCAGGAGGACGGCGTGCAGGGCCTGCACGATCGCAGCTCTCGCCCGGCCAGGACGCGCACGAACCTGGACGCTGC
GCTGCACGAGCGCATCGAGCAATTGCGCCGCTCGCGCATGCCCATGCGCCGCATCGCCACCATCGTGGGGCGCAGCGTGTCCACGGTCAGCCGCCTGCTC
GCACGCCTGGGGCTTTCCAGCCTGAAGGCACTCGACCCTGTTGCGCCCGTCGTTCGCTACGAGCGAGAAGCGCCGGGCGAGCTGCTGCATATCGACACCA
AGAAGCTCGGGCGCATCGTGCAGCCCAGCCACCGCGTCACAGGCGATCGTCGCGATGCCACGCGAGGCGCAGGCTGGGAGTTCGCTCACGTGGCCATTGA
CGATCACTCGCGAGCGGGCTTCGTGCAGATGCGCGACGACGAGCGCAAGGGCTCGGCCGTGGCGTTCCTGCAGGCGGCCGTGGCTCACTACGCGGCCTTG
GGCGTGACCATCAAGCGCCTGATCACCGACAACGGCTCGGCCTATCGCTCGCGGCTGTTCGCCAAGACTTGCCAGGCACTGGGCATCAAACATACCTTCA
CCAAGCCCTATCGCCCACAGACCAATGGCAAGGCCGAGCGATTCATCCAGACCTGCCTGCGCGAGTGGGCCTATGGCCGTGTCTGGGCCAACAGCAAAGA
ACGCACGACATGGCTGCCTGCGTTTCTGAGCTACTACAACGCCAGGAGGCCGCACTCCGCATTGGGCTACAGGCCACCAGCTTCCCGACTCAGCGGGAAT
AACCTATTGCAACTCGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
934 bp | 312 aa | 92 | 1025 | + | No |
Chemistry : DDE
ORF sequence :
MNSHKNARLTLEGRKLLVQRIAGMGLMPAAEAAGISPRTARKWLKRFQEDGVQGLHDRSSRPARTRTNLDAALHERIEQLRRSRMPMRRIATIVGRSVST
VSRLLARLGLSSLKALDPVAPVVRYEREAPGELLHIDTKKLGRIVQPSHRVTGDRRDATRGAGWEFAHVAIDDHSRAGFVQMRDDERKGSAVAFLQAAVA
HYAALGVTIKRLITDNGSAYRSRLFAKTCQALGIKHTFTKPYRPQTNGKAERFIQTCLREWAYGRVWANSKERTTWLPAFLSYYNARRPHSALGYRPPAS
RLSGNNLLQLDS
VSRLLARLGLSSLKALDPVAPVVRYEREAPGELLHIDTKKLGRIVQPSHRVTGDRRDATRGAGWEFAHVAIDDHSRAGFVQMRDDERKGSAVAFLQAAVA
HYAALGVTIKRLITDNGSAYRSRLFAKTCQALGIKHTFTKPYRPQTNGKAERFIQTCLREWAYGRVWANSKERTTWLPAFLSYYNARRPHSALGYRPPAS
RLSGNNLLQLDS
Blast result :
Comments
ISCte4 is 68% aa similar to IS481. The stop codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.(2006) Direct Submission Genbank.