ISBxe3

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007951 ND Burkholderia xenovorans
Burkholderia xenovorans LB400
DNA section
IS Length : 1279 bp

Ends


IR Length : 50/50

IRL : TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACAC
IRR : TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACAC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTTCTTTGCATGCCGCAAAGAAAGT7

DNA sequence

TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACACTCTGGGCGAGCGAATCGCCTGGAGCCGGTTATGCCCTGGAACCCGAGAGA
CACCATGAATTTGCGTCTGGAATTCGTTCAACTGGCCTCGCAGGAAGGCGCCAACCGTCGTGAGTTGTGTCGGCGTTTTGGCATCAGCCCGAAGACCGGC
TACAAGTGGCTCGATCGCCACGCAAAGGGTGGCGACACCGCGCTGACGGATCATTCGCGACGGCCCCAGCAGAGCCCGGCACGCACGCCACCGTCGGTCG
AGCAGCGGGTGGTCGAACTGCGGCGGGCGCATCCGGCCTGGGGTGGACGCAAGATCAGCCGACGTCTGTGCGATCTGGGTCAAACGGATGTGCCCGCGCC
CAGCACCGTGACCGATATCCTGCATCGACACGGGCTGATCGAGCCGGCCGCTTCCGCCGCCGCCACGGCCTGGCAGCGCTTCGAGCACGCGCAGCCCAAC
GATCTCTGGCAGATGGATTTCAAGGGCTGGTTCGACCTGCAGGACGGACGGCACTGTTCGCCACTGACCATGCTGGACGATCATTCGCGCTACAACGTGA
CCCTCGATGCCTGCATCAGCACCGACACCCGGATCGTGCAGCATCATCTGGAGCGCACGTTCCGCCGCTACGGGCTGCCGCTGCGCATCAACGCGGACAA
TGGTTCGCCGTGGGGCAGCCCCAGCCAGCCGGGCCAGTTGACCGAACTGGCCATCTGGCTCATCCGGCTGGGCGTGCGACTGTCGCACAGCCGCGTGGCG
CATCCGCAGACCAATGGCAAGGAGGAGCGGTTTCATCGCACGCTGAAGGCCGAGGTGATCGCCGGGCGCCATTTCAGGGACCTGCGCAGCGCCCAGCAGG
CGTTCGATGAGTGGCGCTCGGTCTACAACCACCAGCGCCCGCATCAGGCGCTGGACATGGCGACCCCGGTTACGCGCTATCGACCGAGCCCGCGTGCCTA
CCCCGAGAGCCTGCCGCCGATCGAGTACGGCGCAAACGACCACGTGCAGTACGTGAAGTGGAATGGTGAACTACGCTTCAGGAAGCAGCGCTTCAAGGTA
TCGAGCGCATTGCATAACCTGCCCGTGGCCATCCGGGAGCGCGTCGGTGAAGAGAACTGCTACGACCTGTTTTTTGCGCATCACCGTTTCGGAACCATCA
ACCTGAGTCCGCAGGAGTGAGCGGAGCATGTGTTACCCATGTCTCCGCACACCTGTTACCCATGTCTCCGGTCCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1141 bp379 aa801220+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPWNPRDTMNLRLEFVQLASQEGANRRELCRRFGISPKTGYKWLDRHAKGGDTALTDHSRRPQQSPARTPPSVEQRVVELRRAHPAWGGRKISRRLCDLG
QTDVPAPSTVTDILHRHGLIEPAASAAATAWQRFEHAQPNDLWQMDFKGWFDLQDGRHCSPLTMLDDHSRYNVTLDACISTDTRIVQHHLERTFRRYGLP
LRINADNGSPWGSPSQPGQLTELAIWLIRLGVRLSHSRVAHPQTNGKEERFHRTLKAEVIAGRHFRDLRSAQQAFDEWRSVYNHQRPHQALDMATPVTRY
RPSPRAYPESLPPIEYGANDHVQYVKWNGELRFRKQRFKVSSALHNLPVAIRERVGEENCYDLFFAHHRFGTINLSPQE

 

Blast result :
Comments
ISBxe3 is 50% aa similar to ISMav2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.(2006) Direct submission GenBank.