ISBxe3
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007951 | ND | Burkholderia xenovorans | Burkholderia xenovorans LB400 |
DNA section
IS Length : 1279 bp
Ends
IR Length : 50/50
IRL : TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACAC
IRR : TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTTTCTTTG | CATGCCG | CAAAGAAAGT | 7 |
DNA sequence
TGTATGGACCGGAGACATGGGTAACAGGTGTGCGGAGACATGGGTAACACTCTGGGCGAGCGAATCGCCTGGAGCCGGTTATGCCCTGGAACCCGAGAGA
CACCATGAATTTGCGTCTGGAATTCGTTCAACTGGCCTCGCAGGAAGGCGCCAACCGTCGTGAGTTGTGTCGGCGTTTTGGCATCAGCCCGAAGACCGGC
TACAAGTGGCTCGATCGCCACGCAAAGGGTGGCGACACCGCGCTGACGGATCATTCGCGACGGCCCCAGCAGAGCCCGGCACGCACGCCACCGTCGGTCG
AGCAGCGGGTGGTCGAACTGCGGCGGGCGCATCCGGCCTGGGGTGGACGCAAGATCAGCCGACGTCTGTGCGATCTGGGTCAAACGGATGTGCCCGCGCC
CAGCACCGTGACCGATATCCTGCATCGACACGGGCTGATCGAGCCGGCCGCTTCCGCCGCCGCCACGGCCTGGCAGCGCTTCGAGCACGCGCAGCCCAAC
GATCTCTGGCAGATGGATTTCAAGGGCTGGTTCGACCTGCAGGACGGACGGCACTGTTCGCCACTGACCATGCTGGACGATCATTCGCGCTACAACGTGA
CCCTCGATGCCTGCATCAGCACCGACACCCGGATCGTGCAGCATCATCTGGAGCGCACGTTCCGCCGCTACGGGCTGCCGCTGCGCATCAACGCGGACAA
TGGTTCGCCGTGGGGCAGCCCCAGCCAGCCGGGCCAGTTGACCGAACTGGCCATCTGGCTCATCCGGCTGGGCGTGCGACTGTCGCACAGCCGCGTGGCG
CATCCGCAGACCAATGGCAAGGAGGAGCGGTTTCATCGCACGCTGAAGGCCGAGGTGATCGCCGGGCGCCATTTCAGGGACCTGCGCAGCGCCCAGCAGG
CGTTCGATGAGTGGCGCTCGGTCTACAACCACCAGCGCCCGCATCAGGCGCTGGACATGGCGACCCCGGTTACGCGCTATCGACCGAGCCCGCGTGCCTA
CCCCGAGAGCCTGCCGCCGATCGAGTACGGCGCAAACGACCACGTGCAGTACGTGAAGTGGAATGGTGAACTACGCTTCAGGAAGCAGCGCTTCAAGGTA
TCGAGCGCATTGCATAACCTGCCCGTGGCCATCCGGGAGCGCGTCGGTGAAGAGAACTGCTACGACCTGTTTTTTGCGCATCACCGTTTCGGAACCATCA
ACCTGAGTCCGCAGGAGTGAGCGGAGCATGTGTTACCCATGTCTCCGCACACCTGTTACCCATGTCTCCGGTCCATACA
CACCATGAATTTGCGTCTGGAATTCGTTCAACTGGCCTCGCAGGAAGGCGCCAACCGTCGTGAGTTGTGTCGGCGTTTTGGCATCAGCCCGAAGACCGGC
TACAAGTGGCTCGATCGCCACGCAAAGGGTGGCGACACCGCGCTGACGGATCATTCGCGACGGCCCCAGCAGAGCCCGGCACGCACGCCACCGTCGGTCG
AGCAGCGGGTGGTCGAACTGCGGCGGGCGCATCCGGCCTGGGGTGGACGCAAGATCAGCCGACGTCTGTGCGATCTGGGTCAAACGGATGTGCCCGCGCC
CAGCACCGTGACCGATATCCTGCATCGACACGGGCTGATCGAGCCGGCCGCTTCCGCCGCCGCCACGGCCTGGCAGCGCTTCGAGCACGCGCAGCCCAAC
GATCTCTGGCAGATGGATTTCAAGGGCTGGTTCGACCTGCAGGACGGACGGCACTGTTCGCCACTGACCATGCTGGACGATCATTCGCGCTACAACGTGA
CCCTCGATGCCTGCATCAGCACCGACACCCGGATCGTGCAGCATCATCTGGAGCGCACGTTCCGCCGCTACGGGCTGCCGCTGCGCATCAACGCGGACAA
TGGTTCGCCGTGGGGCAGCCCCAGCCAGCCGGGCCAGTTGACCGAACTGGCCATCTGGCTCATCCGGCTGGGCGTGCGACTGTCGCACAGCCGCGTGGCG
CATCCGCAGACCAATGGCAAGGAGGAGCGGTTTCATCGCACGCTGAAGGCCGAGGTGATCGCCGGGCGCCATTTCAGGGACCTGCGCAGCGCCCAGCAGG
CGTTCGATGAGTGGCGCTCGGTCTACAACCACCAGCGCCCGCATCAGGCGCTGGACATGGCGACCCCGGTTACGCGCTATCGACCGAGCCCGCGTGCCTA
CCCCGAGAGCCTGCCGCCGATCGAGTACGGCGCAAACGACCACGTGCAGTACGTGAAGTGGAATGGTGAACTACGCTTCAGGAAGCAGCGCTTCAAGGTA
TCGAGCGCATTGCATAACCTGCCCGTGGCCATCCGGGAGCGCGTCGGTGAAGAGAACTGCTACGACCTGTTTTTTGCGCATCACCGTTTCGGAACCATCA
ACCTGAGTCCGCAGGAGTGAGCGGAGCATGTGTTACCCATGTCTCCGCACACCTGTTACCCATGTCTCCGGTCCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1141 bp | 379 aa | 80 | 1220 | + | No |
Chemistry : DDE
ORF sequence :
MPWNPRDTMNLRLEFVQLASQEGANRRELCRRFGISPKTGYKWLDRHAKGGDTALTDHSRRPQQSPARTPPSVEQRVVELRRAHPAWGGRKISRRLCDLG
QTDVPAPSTVTDILHRHGLIEPAASAAATAWQRFEHAQPNDLWQMDFKGWFDLQDGRHCSPLTMLDDHSRYNVTLDACISTDTRIVQHHLERTFRRYGLP
LRINADNGSPWGSPSQPGQLTELAIWLIRLGVRLSHSRVAHPQTNGKEERFHRTLKAEVIAGRHFRDLRSAQQAFDEWRSVYNHQRPHQALDMATPVTRY
RPSPRAYPESLPPIEYGANDHVQYVKWNGELRFRKQRFKVSSALHNLPVAIRERVGEENCYDLFFAHHRFGTINLSPQE
QTDVPAPSTVTDILHRHGLIEPAASAAATAWQRFEHAQPNDLWQMDFKGWFDLQDGRHCSPLTMLDDHSRYNVTLDACISTDTRIVQHHLERTFRRYGLP
LRINADNGSPWGSPSQPGQLTELAIWLIRLGVRLSHSRVAHPQTNGKEERFHRTLKAEVIAGRHFRDLRSAQQAFDEWRSVYNHQRPHQALDMATPVTRY
RPSPRAYPESLPPIEYGANDHVQYVKWNGELRFRKQRFKVSSALHNLPVAIRERVGEENCYDLFFAHHRFGTINLSPQE
Blast result :
Comments
ISBxe3 is 50% aa similar to ISMav2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.(2006) Direct submission GenBank.