ISGlo3
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAVG01000013 | ND | Geobacter lovleyi | Geobacter lovleyi SZ |
DNA section
IS Length : 1076 bp
Ends
IR Length : 27/40
IRL : TGTCAGGTCCCGGATGATTCCATCGCCAGGAAAAGCTTTTCATTGTTCCT
IRR : TGTTAGGTCCCGGATGATTCCTGACTTGTTTGTGGAAAAGATCGGGTTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGAATCAAA | TCTAAC | CCGAAATTCG | 6 |
DNA sequence
TGTCAGGTCCCGGATGATTCCATCGCCAGGAAAAGCTTTTCATTGTTCCTGGCTCGCGATATGCTCTTTGACATCATCTGCGGTGAAATCTGAGGAGCCT
GATATGACAATTCGGTTGCACGCCAACGCGACGACAACACCCAGGATTCGGCGCTACATTCAACAATCGAGCAAGACGGACAAAGGGCTGGCCAAGGAGC
TGGGCATTTCCCTTGATACCGTACGGCGGTGGCGCAAACGCAGTGAGGTACATGATCACTCTCATACGCCGCACCGGCTCCCCACGACCCTAAACGAGGC
CCAGGAAGCGGTGGTGATCGAGCTGCGCCGTTCCCTGCTGCTGCCCTTGGATGACCTTCTGGTCGTCACCCGCGAATTCATCCATCCCGAGGCCTCGCGT
TCGGCCCTGGACCGCCTCTTGCGTCGTCATGGTGTGTCTCGGCTGGCGGATCTTATCCCCAAGGAGGATGAGACTCAAGCCAAGCCCAAGACCTTCAAGA
GCTATGAACCCGGCTTTGTTCATGTCGATATCAAATATCTGCCGCAAATGCCGGACGAGACCTCGCGTCGGTACCTGTTCGTCGCCATCGACCGGGCCAG
CCGCTGGGTGTATCTGGAGTTGCGCAAAAGCAAATCGGCCCAGGCGGCAAAAGGCTTTCTGGAGCGCTTGGTCGCCAAAGCTCCCTTTAAGATCCACAAG
ATGCTGACCGATAACGACAAAGCCTTTACCGACCGATTCAGCACAGCAGGTGAACGCAAGCCCACGGGGAACCACCTCTTTGACAAGGCCTGCTTGAAAC
ACAACATTGAGCACCGCCTCATTCCCCCACGACACCCTCAGACCAACGGGATGGTGGAGCGTTTCAACGGTCGGATCAGCGACGTATTGGCGACCACGCG
GTTTGATTCAGCCGCAGACTTGGAGGCGACCATGCTCAGGTATGCTCACCTCTATAACCAGCACATTCCGCAACGAGCGCTCGGCCACAAAACCCCGGTA
GAGGCCCTGAAGAGCTGGCAAAAATCAAAACCCGATCTTTTCCACAAACAAGTCAGGAATCATCCGGGACCTAACA
GATATGACAATTCGGTTGCACGCCAACGCGACGACAACACCCAGGATTCGGCGCTACATTCAACAATCGAGCAAGACGGACAAAGGGCTGGCCAAGGAGC
TGGGCATTTCCCTTGATACCGTACGGCGGTGGCGCAAACGCAGTGAGGTACATGATCACTCTCATACGCCGCACCGGCTCCCCACGACCCTAAACGAGGC
CCAGGAAGCGGTGGTGATCGAGCTGCGCCGTTCCCTGCTGCTGCCCTTGGATGACCTTCTGGTCGTCACCCGCGAATTCATCCATCCCGAGGCCTCGCGT
TCGGCCCTGGACCGCCTCTTGCGTCGTCATGGTGTGTCTCGGCTGGCGGATCTTATCCCCAAGGAGGATGAGACTCAAGCCAAGCCCAAGACCTTCAAGA
GCTATGAACCCGGCTTTGTTCATGTCGATATCAAATATCTGCCGCAAATGCCGGACGAGACCTCGCGTCGGTACCTGTTCGTCGCCATCGACCGGGCCAG
CCGCTGGGTGTATCTGGAGTTGCGCAAAAGCAAATCGGCCCAGGCGGCAAAAGGCTTTCTGGAGCGCTTGGTCGCCAAAGCTCCCTTTAAGATCCACAAG
ATGCTGACCGATAACGACAAAGCCTTTACCGACCGATTCAGCACAGCAGGTGAACGCAAGCCCACGGGGAACCACCTCTTTGACAAGGCCTGCTTGAAAC
ACAACATTGAGCACCGCCTCATTCCCCCACGACACCCTCAGACCAACGGGATGGTGGAGCGTTTCAACGGTCGGATCAGCGACGTATTGGCGACCACGCG
GTTTGATTCAGCCGCAGACTTGGAGGCGACCATGCTCAGGTATGCTCACCTCTATAACCAGCACATTCCGCAACGAGCGCTCGGCCACAAAACCCCGGTA
GAGGCCCTGAAGAGCTGGCAAAAATCAAAACCCGATCTTTTCCACAAACAAGTCAGGAATCATCCGGGACCTAACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 977 bp | 325 aa | 104 | 1080 | + | No |
Chemistry : DDE
ORF sequence :
MTIRLHANATTTPRIRRYIQQSSKTDKGLAKELGISLDTVRRWRKRSEVHDHSHTPHRLPTTLNEAQEAVVIELRRSLLLPLDDLLVVTREFIHPEASRS
ALDRLLRRHGVSRLADLIPKEDETQAKPKTFKSYEPGFVHVDIKYLPQMPDETSRRYLFVAIDRASRWVYLELRKSKSAQAAKGFLERLVAKAPFKIHKM
LTDNDKAFTDRFSTAGERKPTGNHLFDKACLKHNIEHRLIPPRHPQTNGMVERFNGRISDVLATTRFDSAADLEATMLRYAHLYNQHIPQRALGHKTPVE
ALKSWQKSKPDLFHKQVRNHPGPNI
ALDRLLRRHGVSRLADLIPKEDETQAKPKTFKSYEPGFVHVDIKYLPQMPDETSRRYLFVAIDRASRWVYLELRKSKSAQAAKGFLERLVAKAPFKIHKM
LTDNDKAFTDRFSTAGERKPTGNHLFDKACLKHNIEHRLIPPRHPQTNGMVERFNGRISDVLATTRFDSAADLEATMLRYAHLYNQHIPQRALGHKTPVE
ALKSWQKSKPDLFHKQVRNHPGPNI
Blast result :
Comments
ISGlo3 is 40% aa similar to ISMyma6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.(2006) Direct Submission GenBank.