ISTel1
- Family IS481
- Group
Isoform Synonym(s) ISEL4
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_004113 | ND | Thermosynechococcus elongatus | Thermosynechococcus elongatus BP-1 |
DNA section
IS Length : 1101 bp
Ends
IR Length : 20/27
IRL : TGTCAGGTCCCGCATCATTATATTCCCAGAAGTCGTGCTAAACTCTTCGA
IRR : TGTCAAGACCCGTGACATTATCTACCCTTGAAACGAAGAGGTCTGGTCGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTGTTTAGG | CCTAAC | AACGCCTCTA | 6 |
| TTATTGCCTA | ACTAGC | GCCTATGATG | 6 |
| AATCCCCTTG | GCTACA | TTGAGGCGGC | 6 |
| ATCAAGTGGA | CTTAGA | AGAGTACTTA | 6 |
| TAACCCCTTG | GCTAGA | AAAGGTACAT | 6 |
| CCCCTCGTTG | CTTACT | AAAAGGGATA | 6 |
| GCAAAGAGTT | GATAGC | CATAGGTGCT | 6 |
| CTCATTCATC | CCTACG | TCAAACGGGA | 6 |
| TGGATGGAAG | TCTATG | CACCAGTGTT | 6 |
| TCGGCCTTGA | CCTATG | CAACAACGGC | 6 |
| AGTGATTAAA | GCTAATGATG | 0 | |
| CTTCGCTAAT | ATTAAACTAT | 0 |
DNA sequence
TGTCAGGTCCCGCATCATTATATTCCCAGAAGTCGTGCTAAACTCTTCGAAGCGTACCGGCTCCTTGAGTGCTTGTTCCAAGGTCGGAAAGCGTTCAACG
ATGGAGTATCACCATGCCACGTATTCATGCCAACGCCCGAACGACACCCCGAATTCGCCGTGAAATCCAACAAGCACCGGCTTCGATCAGTCATCGCGAG
CTTGCCAGACGTTACGGGATCCACCGGCACACGGTAGCGAAATGGCGTAAGCGCGCAACCGTTGAAGACAAAAGCACCCGCCCGCACCGCCTGCAAACGA
CGCTTACGGAAGCGCAAGAGCTTGTGATCGTTGAGGTGCGTAAGCTCCTTTTGCTGCCTCTTGATGACCTTCTCGTTCTTGCCCGGACGTTCCTCAACCC
CAATCTGAGCCGCTCAGCGCTGGATCGCTGCCTGCGTCGCCACGGAGTCTCGAACCTCAGGATACTGCAAAAGGAACGCGAAAGCCTCGAAGGCAGTCCC
AAAAGCACCACGCGGCAGTTCAAAGCGTACGCACCTGGGTTCATCCACATCGACGTCAAATACCTGCCACAAATGCCGGATGAGGAGCAGCGCCGCTACC
TCTTTGTCGCGATTGATCGGGCAACGCGCTGGGTCTATTTGGCAATCCACGAGGAGAAGAGCGCAGAATCGGCAACGCGCTTTCTTGCAAATGTCCTTGC
CAACGCTCCTTTCGTGGTGCGTACGGTGCTGACTGATAACGGCAAGGAGTTTACCGACCGTTTCTCCTCCGCAGGCGAACGCCAACCCACGGGACACCAT
CCGTTTGATCAGCTCTGTCGTGAAAAGCGCATCACCCATCGGCTCATCCAACCCCGCCATCCGCAAACCAACGGGATGGTGGAACGCTTCAACGGCCGCA
TTGCGGAGATTCTGCGCGCTGAACGCTTTGTCTCGGCAGCCGACTTGCAAGAGACGCTCACGCGATACCTTTGGGCGTACAATCACCGCATTCCCCAACG
CGTTTTGGGCCACATGACTCCCATTGAGAAACTGCGATGGTGGCAAACTGAGCGACCAGACCTCTTCGTTTCAAGGGTAGATAATGTCACGGGTCTTGAC
A
ATGGAGTATCACCATGCCACGTATTCATGCCAACGCCCGAACGACACCCCGAATTCGCCGTGAAATCCAACAAGCACCGGCTTCGATCAGTCATCGCGAG
CTTGCCAGACGTTACGGGATCCACCGGCACACGGTAGCGAAATGGCGTAAGCGCGCAACCGTTGAAGACAAAAGCACCCGCCCGCACCGCCTGCAAACGA
CGCTTACGGAAGCGCAAGAGCTTGTGATCGTTGAGGTGCGTAAGCTCCTTTTGCTGCCTCTTGATGACCTTCTCGTTCTTGCCCGGACGTTCCTCAACCC
CAATCTGAGCCGCTCAGCGCTGGATCGCTGCCTGCGTCGCCACGGAGTCTCGAACCTCAGGATACTGCAAAAGGAACGCGAAAGCCTCGAAGGCAGTCCC
AAAAGCACCACGCGGCAGTTCAAAGCGTACGCACCTGGGTTCATCCACATCGACGTCAAATACCTGCCACAAATGCCGGATGAGGAGCAGCGCCGCTACC
TCTTTGTCGCGATTGATCGGGCAACGCGCTGGGTCTATTTGGCAATCCACGAGGAGAAGAGCGCAGAATCGGCAACGCGCTTTCTTGCAAATGTCCTTGC
CAACGCTCCTTTCGTGGTGCGTACGGTGCTGACTGATAACGGCAAGGAGTTTACCGACCGTTTCTCCTCCGCAGGCGAACGCCAACCCACGGGACACCAT
CCGTTTGATCAGCTCTGTCGTGAAAAGCGCATCACCCATCGGCTCATCCAACCCCGCCATCCGCAAACCAACGGGATGGTGGAACGCTTCAACGGCCGCA
TTGCGGAGATTCTGCGCGCTGAACGCTTTGTCTCGGCAGCCGACTTGCAAGAGACGCTCACGCGATACCTTTGGGCGTACAATCACCGCATTCCCCAACG
CGTTTTGGGCCACATGACTCCCATTGAGAAACTGCGATGGTGGCAAACTGAGCGACCAGACCTCTTCGTTTCAAGGGTAGATAATGTCACGGGTCTTGAC
A
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1032 bp | 344 aa | 69 | 1100 | + | No |
Chemistry : DDE
ORF sequence :
VLVPRSESVQRWSITMPRIHANARTTPRIRREIQQAPASISHRELARRYGIHRHTVAKWRKRATVEDKSTRPHRLQTTLTEAQELVIVEVRKLLLLPLDD
LLVLARTFLNPNLSRSALDRCLRRHGVSNLRILQKERESLEGSPKSTTRQFKAYAPGFIHIDVKYLPQMPDEEQRRYLFVAIDRATRWVYLAIHEEKSAE
SATRFLANVLANAPFVVRTVLTDNGKEFTDRFSSAGERQPTGHHPFDQLCREKRITHRLIQPRHPQTNGMVERFNGRIAEILRAERFVSAADLQETLTRY
LWAYNHRIPQRVLGHMTPIEKLRWWQTERPDLFVSRVDNVTGLD
LLVLARTFLNPNLSRSALDRCLRRHGVSNLRILQKERESLEGSPKSTTRQFKAYAPGFIHIDVKYLPQMPDEEQRRYLFVAIDRATRWVYLAIHEEKSAE
SATRFLANVLANAPFVVRTVLTDNGKEFTDRFSSAGERQPTGHHPFDQLCREKRITHRLIQPRHPQTNGMVERFNGRIAEILRAERFVSAADLQETLTRY
LWAYNHRIPQRVLGHMTPIEKLRWWQTERPDLFVSRVDNVTGLD
Blast result :
Comments
ISTel1 is 42% aa similar to IS481.
There is no STOP codon, the transposase use the first Stop codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
There is no STOP codon, the transposase use the first Stop codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
References
1] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.