ISRel2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CIAT 652 Rhizobium etli CFN 42 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 18/24
IRL : TGTGAGCTTTCGGGAGGTTGTCCATTCAAAGCGGATTTAGGAGACTGGAG
IRR : TGTGGAGCCTCAACAGGTTGTCCTGGGTAAGAGCGAGCCTAGTGATTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCGCAGGC | TCTAGT | CGCCGCCGGA | 6 |
GCGCGCAGGC | TCTAGT | CGCCGCCGGA | 6 |
DNA sequence
TGTGAGCTTTCGGGAGGTTGTCCATTCAAAGCGGATTTAGGAGACTGGAGCTATCACACCTCGAGTCGGAAGGATCGCCGCGAATGAACATTCATAAGAA
TGCCCGACTGACGCCGTTGCGCCGGGAACAAATGGCGCTTGCTGTTATCGAAGGGCATCTGACCCAGGCTCAGGCAGCACAGGCCTATGGCGTCGCGGCC
AAGATCGTCGCCCGTTGGGTCGAGCGTTTCAAGGCCGGTGGTCGAGAGGCGATGCTCGATCGTTCCTCCCGACCTCATGCCATGCCCCGGCAGACCAGTC
AGGCGCTGGCGGAGCGCATCATCACGCTTCGCCGCCAGCGCCTGACTGGCAAGCACATCGCGATCGAAACCGGTGTATCTGCAGCGACGGTGAGCCGGGT
TCTCAAGCGCGCAGGCCTCTCCCGCCTCAAGGATATCGAGCCGGCCGAGCCTGTGCGTCGTCATGAACGCCAGGCTCCCGGCGAGATGATTCATATCGAC
ATCAAGAAGCTCGGCCGGTTTCATGAGGTCGGCCACCGCATCACCGGCGATCGCACTCGCCAGAGTTCGCGCAGAGGCAAGAGTTGGGGCGCCGGTTGGG
AATGCGTTCATGTGGCCATCGACGATGCCTCTCGCATCGCTTTCTCACAGATATCGCCGGACGAGACGAAAGAAAGCGCCGTGGCCTTCTTGAAGGCGGC
ATTGGCCTATTATGCCAGCCTCGGGATCGCGGTCGAGCGCGTCATGACCGACAATGGTCCCTGCTACACATCAAAGCCATTCGGCCAAGCTTGTCGCGAC
AACGGCCTCAAGCACGTTCGCACCAGACCATATACGCCTAAAACCAACGGAAAGGCCGAACGCTTCATCCAGACCGCCCTCAGAGAGTGGGCCTACGCCG
TCGCCTATCCCAACTCGGACATGCGCGCCGCCGAACTGCCACGATGGCTTCATCGCTACAATTGGCACAGGCCTCACGGAAGTCTAAACTCAAAACCACC
AATCACTAGGCTCGCTCTTACCCAGGACAACCTGTTGAGGCTCCACA
TGCCCGACTGACGCCGTTGCGCCGGGAACAAATGGCGCTTGCTGTTATCGAAGGGCATCTGACCCAGGCTCAGGCAGCACAGGCCTATGGCGTCGCGGCC
AAGATCGTCGCCCGTTGGGTCGAGCGTTTCAAGGCCGGTGGTCGAGAGGCGATGCTCGATCGTTCCTCCCGACCTCATGCCATGCCCCGGCAGACCAGTC
AGGCGCTGGCGGAGCGCATCATCACGCTTCGCCGCCAGCGCCTGACTGGCAAGCACATCGCGATCGAAACCGGTGTATCTGCAGCGACGGTGAGCCGGGT
TCTCAAGCGCGCAGGCCTCTCCCGCCTCAAGGATATCGAGCCGGCCGAGCCTGTGCGTCGTCATGAACGCCAGGCTCCCGGCGAGATGATTCATATCGAC
ATCAAGAAGCTCGGCCGGTTTCATGAGGTCGGCCACCGCATCACCGGCGATCGCACTCGCCAGAGTTCGCGCAGAGGCAAGAGTTGGGGCGCCGGTTGGG
AATGCGTTCATGTGGCCATCGACGATGCCTCTCGCATCGCTTTCTCACAGATATCGCCGGACGAGACGAAAGAAAGCGCCGTGGCCTTCTTGAAGGCGGC
ATTGGCCTATTATGCCAGCCTCGGGATCGCGGTCGAGCGCGTCATGACCGACAATGGTCCCTGCTACACATCAAAGCCATTCGGCCAAGCTTGTCGCGAC
AACGGCCTCAAGCACGTTCGCACCAGACCATATACGCCTAAAACCAACGGAAAGGCCGAACGCTTCATCCAGACCGCCCTCAGAGAGTGGGCCTACGCCG
TCGCCTATCCCAACTCGGACATGCGCGCCGCCGAACTGCCACGATGGCTTCATCGCTACAATTGGCACAGGCCTCACGGAAGTCTAAACTCAAAACCACC
AATCACTAGGCTCGCTCTTACCCAGGACAACCTGTTGAGGCTCCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 84 | 1052 | + | No |
Chemistry : DDE
ORF sequence :
MNIHKNARLTPLRREQMALAVIEGHLTQAQAAQAYGVAAKIVARWVERFKAGGREAMLDRSSRPHAMPRQTSQALAERIITLRRQRLTGKHIAIETGVSA
ATVSRVLKRAGLSRLKDIEPAEPVRRHERQAPGEMIHIDIKKLGRFHEVGHRITGDRTRQSSRRGKSWGAGWECVHVAIDDASRIAFSQISPDETKESAV
AFLKAALAYYASLGIAVERVMTDNGPCYTSKPFGQACRDNGLKHVRTRPYTPKTNGKAERFIQTALREWAYAVAYPNSDMRAAELPRWLHRYNWHRPHGS
LNSKPPITRLALTQDNLLRLHI
ATVSRVLKRAGLSRLKDIEPAEPVRRHERQAPGEMIHIDIKKLGRFHEVGHRITGDRTRQSSRRGKSWGAGWECVHVAIDDASRIAFSQISPDETKESAV
AFLKAALAYYASLGIAVERVMTDNGPCYTSKPFGQACRDNGLKHVRTRPYTPKTNGKAERFIQTALREWAYAVAYPNSDMRAAELPRWLHRYNWHRPHGS
LNSKPPITRLALTQDNLLRLHI
Blast result :
Comments
ISRel2 is 78% aa similar to ISBm3. The Stop codon is in the DR.
References
1] Quintero,V., Cevallos,M.A. and Davila,G. (2002) Mol. Microbiol. 46 (4), 1023-1032.