ISRel2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004041 ND Rhizobium etli
Rhizobium etli CIAT 652
Rhizobium etli CFN 42
DNA section
IS Length : 1047 bp

Ends


IR Length : 18/24

IRL : TGTGAGCTTTCGGGAGGTTGTCCATTCAAAGCGGATTTAGGAGACTGGAG
IRR : TGTGGAGCCTCAACAGGTTGTCCTGGGTAAGAGCGAGCCTAGTGATTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCGCAGGCTCTAGTCGCCGCCGGA6
GCGCGCAGGCTCTAGTCGCCGCCGGA6

DNA sequence

TGTGAGCTTTCGGGAGGTTGTCCATTCAAAGCGGATTTAGGAGACTGGAGCTATCACACCTCGAGTCGGAAGGATCGCCGCGAATGAACATTCATAAGAA
TGCCCGACTGACGCCGTTGCGCCGGGAACAAATGGCGCTTGCTGTTATCGAAGGGCATCTGACCCAGGCTCAGGCAGCACAGGCCTATGGCGTCGCGGCC
AAGATCGTCGCCCGTTGGGTCGAGCGTTTCAAGGCCGGTGGTCGAGAGGCGATGCTCGATCGTTCCTCCCGACCTCATGCCATGCCCCGGCAGACCAGTC
AGGCGCTGGCGGAGCGCATCATCACGCTTCGCCGCCAGCGCCTGACTGGCAAGCACATCGCGATCGAAACCGGTGTATCTGCAGCGACGGTGAGCCGGGT
TCTCAAGCGCGCAGGCCTCTCCCGCCTCAAGGATATCGAGCCGGCCGAGCCTGTGCGTCGTCATGAACGCCAGGCTCCCGGCGAGATGATTCATATCGAC
ATCAAGAAGCTCGGCCGGTTTCATGAGGTCGGCCACCGCATCACCGGCGATCGCACTCGCCAGAGTTCGCGCAGAGGCAAGAGTTGGGGCGCCGGTTGGG
AATGCGTTCATGTGGCCATCGACGATGCCTCTCGCATCGCTTTCTCACAGATATCGCCGGACGAGACGAAAGAAAGCGCCGTGGCCTTCTTGAAGGCGGC
ATTGGCCTATTATGCCAGCCTCGGGATCGCGGTCGAGCGCGTCATGACCGACAATGGTCCCTGCTACACATCAAAGCCATTCGGCCAAGCTTGTCGCGAC
AACGGCCTCAAGCACGTTCGCACCAGACCATATACGCCTAAAACCAACGGAAAGGCCGAACGCTTCATCCAGACCGCCCTCAGAGAGTGGGCCTACGCCG
TCGCCTATCCCAACTCGGACATGCGCGCCGCCGAACTGCCACGATGGCTTCATCGCTACAATTGGCACAGGCCTCACGGAAGTCTAAACTCAAAACCACC
AATCACTAGGCTCGCTCTTACCCAGGACAACCTGTTGAGGCTCCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa841052+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIHKNARLTPLRREQMALAVIEGHLTQAQAAQAYGVAAKIVARWVERFKAGGREAMLDRSSRPHAMPRQTSQALAERIITLRRQRLTGKHIAIETGVSA
ATVSRVLKRAGLSRLKDIEPAEPVRRHERQAPGEMIHIDIKKLGRFHEVGHRITGDRTRQSSRRGKSWGAGWECVHVAIDDASRIAFSQISPDETKESAV
AFLKAALAYYASLGIAVERVMTDNGPCYTSKPFGQACRDNGLKHVRTRPYTPKTNGKAERFIQTALREWAYAVAYPNSDMRAAELPRWLHRYNWHRPHGS
LNSKPPITRLALTQDNLLRLHI

 

Blast result :
Comments
ISRel2 is 78% aa similar to ISBm3. The Stop codon is in the DR.
References
1] Quintero,V., Cevallos,M.A. and Davila,G. (2002) Mol. Microbiol. 46 (4), 1023-1032.