ISBcen26
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008545 | ND | Burkholderia cenocepacia | Burkholderia cenocepacia HI2424 |
DNA section
IS Length : 1041 bp
Ends
IR Length : 21/24
IRL : TGTGAAGCTTCAATAGGTTGTATCGATGGTTCATCCGGACTGAGTCTGGG
IRR : TGTGAAGCGTCAAGAGGTTGTTTCTCGACGCGGGAAGTCTGGCCATCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGGCTTTGGGAAATTGC | GCTAGC | GAGAAATTGATTGAAAA | 6 |
DNA sequence
TGTGAAGCTTCAATAGGTTGTATCGATGGTTCATCCGGACTGAGTCTGGGAGACTGGAAGTCGCCAAACACCCAACCTTCCAGGAACCCAGCCGGATGAA
CACCCATAAGAATGCCCGACTCACTTTCGCACGTCGACTTGAGATGGTTCAGGAGATCACCGAATCCGGTTCGAGCGTGTCGCAAGCGGCGGCCGATCAC
GGCGTGACAGCACCGACTGTGCGCAAATGGCTTGGACGCTACCTAGCCGGCGGTGCGGTTGCGCTGGCTGACGCTTCTTCTCGACCGGCTCGCTCTCCAC
GCGCCATCGCCCCGTCGACTGCCTTACTGATCGTGGAATTGCGCCAGCAGCGCTTGCTGCAACGTCAGATCGCTCGACAGGTGGGAGTGTCGGCCTCGAC
CGTCAGTCGGGTGCTGGTGCGTGCCGGACTGTCTCGGTTGAGCGACCTGCAACCGCGTGAACCGGTTCAGCGCTACGAGCACGAGGCGCCGGGCGATTTG
CTGCACATCGACATCAAGAAGCTTGGCCGTATCGCGCGTCCTGGCCATCGTGTCACCGGCAATCGGCGCGATACAGTGGACGGCGTTGGCTGGGAGTACC
TGTTCGTCGCAGTGGACGATCACGCCCGGATTGCCTACACGGCAATGCATCCAGACGAGACGAAACGCAGTGCCGTGCAGTTCCTGCGCGATGCAGTGGC
TTGGTACGCCGGACTCGGCGTGCGTGTGCATCGCTTGCTAACCGACAACGGTTCGGCGTTTCGCTCACACGAGTTTGCGCGAGCCTGTCAGGACCTGGGT
ATCCGGCACAAATTTACGCGGGCGTATCGTCCGCAGACCAACGGCAAGGCCGAACGCTTCATCCAGTCAGCGTTACGCGAATGGGCCTACGCATGGACAT
ACCAGAGCTCGGCCCATCGCATCGAAGCCTTGGCGAGTTGGCAGCACCACTACAACTGGCATCGTGCCCATAGCGCCATCGGCGGCGTTGCGCCGATGGC
CAGACTTCCCGCGTCGAGAAACAACCTCTTGACGCTTCACA
CACCCATAAGAATGCCCGACTCACTTTCGCACGTCGACTTGAGATGGTTCAGGAGATCACCGAATCCGGTTCGAGCGTGTCGCAAGCGGCGGCCGATCAC
GGCGTGACAGCACCGACTGTGCGCAAATGGCTTGGACGCTACCTAGCCGGCGGTGCGGTTGCGCTGGCTGACGCTTCTTCTCGACCGGCTCGCTCTCCAC
GCGCCATCGCCCCGTCGACTGCCTTACTGATCGTGGAATTGCGCCAGCAGCGCTTGCTGCAACGTCAGATCGCTCGACAGGTGGGAGTGTCGGCCTCGAC
CGTCAGTCGGGTGCTGGTGCGTGCCGGACTGTCTCGGTTGAGCGACCTGCAACCGCGTGAACCGGTTCAGCGCTACGAGCACGAGGCGCCGGGCGATTTG
CTGCACATCGACATCAAGAAGCTTGGCCGTATCGCGCGTCCTGGCCATCGTGTCACCGGCAATCGGCGCGATACAGTGGACGGCGTTGGCTGGGAGTACC
TGTTCGTCGCAGTGGACGATCACGCCCGGATTGCCTACACGGCAATGCATCCAGACGAGACGAAACGCAGTGCCGTGCAGTTCCTGCGCGATGCAGTGGC
TTGGTACGCCGGACTCGGCGTGCGTGTGCATCGCTTGCTAACCGACAACGGTTCGGCGTTTCGCTCACACGAGTTTGCGCGAGCCTGTCAGGACCTGGGT
ATCCGGCACAAATTTACGCGGGCGTATCGTCCGCAGACCAACGGCAAGGCCGAACGCTTCATCCAGTCAGCGTTACGCGAATGGGCCTACGCATGGACAT
ACCAGAGCTCGGCCCATCGCATCGAAGCCTTGGCGAGTTGGCAGCACCACTACAACTGGCATCGTGCCCATAGCGCCATCGGCGGCGTTGCGCCGATGGC
CAGACTTCCCGCGTCGAGAAACAACCTCTTGACGCTTCACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 951 bp | 316 aa | 96 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MNTHKNARLTFARRLEMVQEITESGSSVSQAAADHGVTAPTVRKWLGRYLAGGAVALADASSRPARSPRAIAPSTALLIVELRQQRLLQRQIARQVGVSA
STVSRVLVRAGLSRLSDLQPREPVQRYEHEAPGDLLHIDIKKLGRIARPGHRVTGNRRDTVDGVGWEYLFVAVDDHARIAYTAMHPDETKRSAVQFLRDA
VAWYAGLGVRVHRLLTDNGSAFRSHEFARACQDLGIRHKFTRAYRPQTNGKAERFIQSALREWAYAWTYQSSAHRIEALASWQHHYNWHRAHSAIGGVAP
MARLPASRNNLLTLHS
STVSRVLVRAGLSRLSDLQPREPVQRYEHEAPGDLLHIDIKKLGRIARPGHRVTGNRRDTVDGVGWEYLFVAVDDHARIAYTAMHPDETKRSAVQFLRDA
VAWYAGLGVRVHRLLTDNGSAFRSHEFARACQDLGIRHKFTRAYRPQTNGKAERFIQSALREWAYAWTYQSSAHRIEALASWQHHYNWHRAHSAIGGVAP
MARLPASRNNLLTLHS
Blast result :
Comments
ISBcen26 is 81% aa similar to IS481
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., LiPuma,J.J., Gonzalez,C.F., Konstantinidis,K., Tiedje,J.M. and Richardson,P. (2006) Direct Submission GenBank.