ISfinder Mirror Site

ISBcen24

Family IS481
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008061	ND	Burkholderia cenocepacia	Burkholderia cenocepacia AU 1054

DNA section

IS Length : 1096 bp

Ends

IR Length : 22/25

IRL : TGTGTGATTCACGGACATCGTTTCAACTAATATGGGACGATGGAGCGCGA
IRR : TGTGCGATTCGCAGACATCGTTTCACTTTTTTGAAGGCCGTTTCTTTGGC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GTCTGACGCA	CCAACAGC	GCTCTCGCGT	8

DNA sequence

TGTGTGATTCACGGACATCGTTTCAACTAATATGGGACGATGGAGCGCGAAATCTCGATGCGATTACGTTGGGTGCGCATGTATCACGAGACCGGCAACG
CCGGTCTCGTGTGCACGCGTTGTGGCATCTCCAGGCCGACGCTTCGCAAGTGGCTGCGCCGCTACCAGGAGGCGGGAGAAGAAGGTCTTCGCTCTCAAAG
CCGTCGCCCTCTGACCAGCCCGAATCGAAAGGTCTCTGACGCTGATCGGGCAACGATTCTTCGCCTGCGGGCCGAGCGCAAGGGGGCACGGCGGATTCAG
AACGAATTGCGTCTGAACGAACAAAGAGAACTGTCCCTTGCGACCATTCACAAGGTCCTGTGCGAAGCGTTGGTGAAGCCGTTGGTTCGCCCCAGGAGGC
CGGCACAACCGAGGCGCTACAGCCGTCCAGTTCCCGGAGACCGCGTCCAGATGGACACGATGAAGATTGCACGAGGCGTCTACCAGTACACGGCCATCGA
CGACTGTTCACGCTTTCGTGTGCTGGCCGTCTACCCCCGTAGAAATGCCCGAAATACGCTGTTTTTCCTTGATCGCGTCATCGAGGAGATGCCGTTTCCG
ATTCAACGTATCCAGACCGATCGCGGCGGTGAGTTCTTCGCTGAATCCGTGCAGCGGCGCCTGATGAACGAGTGCATTAAATTCCGGCCAATTCCACCAC
GCTCGCCGCACCTCAATGGCAAAGTTGAACGTTCGCAGCTTACTGACCTGAACGAATTCTGGTTCCACCATGCCCCGACAGAGCGGGCAATCGACTTGCG
AATCGAAGAGTGGCAGTTCGACTACAACTGGCGTCGGCCACACGGCTCACTCGGTGGAAAGACTCCGGTTGACCGCATTGCGGAGCTGGGTGAAATCACA
CCTCTCGCGGAAGCGGTGGAAGGTGCGTACGACGAGCGGAAAGAGCGAATTCGACACCGCGAATGGCGGGTCGACAAAATCCTCGGCGAACATCATCGGC
GCGCGTCGGAACCCGTGTTCCCTACGGGCGCCACGGGTTCCGACGCGCCAAAGAAACGGCCTTCAAAAAAGTGAAACGATGTCTGCGAATCGCACA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1017 bp	338 aa	58	1074	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLRWVRMYHETGNAGLVCTRCGISRPTLRKWLRRYQEAGEEGLRSQSRRPLTSPNRKVSDADRATILRLRAERKGARRIQNELRLNEQRELSLATIHKV
LCEALVKPLVRPRRPAQPRRYSRPVPGDRVQMDTMKIARGVYQYTAIDDCSRFRVLAVYPRRNARNTLFFLDRVIEEMPFPIQRIQTDRGGEFFAESVQR
RLMNECIKFRPIPPRSPHLNGKVERSQLTDLNEFWFHHAPTERAIDLRIEEWQFDYNWRRPHGSLGGKTPVDRIAELGEITPLAEAVEGAYDERKERIRH
REWRVDKILGEHHRRASEPVFPTGATGSDAPKKRPSKK

Blast result :

Comments

ISBcen24 is 73% aa similar to ISVch1.

References

1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J., Konstantinidis,K., Tiedje,J.M. and Richardson,P.(2006) Direct submission GenBank.