ISNe2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004757 ND Nitrosomonas europaea
Nitrosomonas europaea ATCC 19718
DNA section
IS Length : 1005 bp

Ends


IR Length : 23/32

IRL : TGTTTGGTCCCGCATTGTGATGGTGTATTGTATGATTTGCTACCGACACA
IRR : TGTTTAGTCCCACTTTGTGATGGTATGGATTGATGATAAAACGTTCAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCACTACCTTGAAGACGC0

DNA sequence

TGTTTGGTCCCGCATTGTGATGGTGTATTGTATGATTTGCTACCGACACAGGAGGAATTATGGGACAGATATTACACGGGAGCGCCCGCACGACAGCGGC
GGTGCGTCGAGCGATACAACATAGTGAAGAGAGCCTGAATGTGCTGGCCAGGCGCTACGCCATCAATCCCAAGACGGTGGCGAAATGGAAGAAGCGCAAC
TTTACGCACGATGCCAGGATGGGTCCGAAAGAGCCGCGTTCCACGGTTCTGACACCAGAGCAGGAAGCCGCTTGCGTAGCCTTCCGCAAACATACGCTGC
TGCCGTTGGATGACTGCCTTTACGCCTTGCAAAGCAGCATTCCCACCCTGACCCGATCATCACTGCATCGCCTGTTCCAGCGCCACAACATCAGCCGCTT
ACCGGAGGTGGAAGGCGAGAAACCTGCCAGAAAAAAGTTCGCCCAATATCCCATCGGCTATTTCCATATCGACATTGCCGAAGTACGGACAGAAGAAGGC
AAACTGTATCTATTCGTCGCCATCGACCGAACCAGCAAGTTCGCTTATGCTGAATTACTGCCCAAGTACGGCAAGATGGAAGCAGCGCAGTTCCTGCGCA
ATCTCATCGCCGCCGTACCCTATAAAATCCATACCATCCTCACAGACAACGGCATCCAGTTCACCCACCGCAAAACAGACAGGCATGCTTTCTTGCATAT
CTTCGACCGTGTCTGCCTGGAAAATGGTACGGAACATCGCCTGACCCAGCCAAATCACCCCTGGACCAATGGTCAAGTCGAACGCATGAACCGCACCCTC
AAGGAAGCAACCGTCAAACGCTATCATTATGAAAATCATCAACAGTTGCGAGAGCATCTTTACAGCTTCCTGAATGCCTACAACTTCGCCAGGCGACTCA
AAACCTTACGAGGACTCACACCTTACGAATACATCATCAAATGCTGGCAAAACGAACCTGAACGTTTTATCATCAATCCATACCATCACAAAGTGGGACT
AAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
946 bp315 aa601005+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQILHGSARTTAAVRRAIQHSEESLNVLARRYAINPKTVAKWKKRNFTHDARMGPKEPRSTVLTPEQEAACVAFRKHTLLPLDDCLYALQSSIPTLTRS
SLHRLFQRHNISRLPEVEGEKPARKKFAQYPIGYFHIDIAEVRTEEGKLYLFVAIDRTSKFAYAELLPKYGKMEAAQFLRNLIAAVPYKIHTILTDNGIQ
FTHRKTDRHAFLHIFDRVCLENGTEHRLTQPNHPWTNGQVERMNRTLKEATVKRYHYENHQQLREHLYSFLNAYNFARRLKTLRGLTPYEYIIKCWQNEP
ERFIINPYHHKVGLNNYPQQNGMVKWVTGH

 

Blast result :
Comments
ISNe2 is 43% (ORF) aa similar to IS481v1.
The transposon use the first stop codon after the end of the element (15 aa ) .
References
1] Chain,P., Lamerdin,J., Larimer,F., Regala,W., Lao,V., Land,M., Hauser,L., Hooper,A., Klotz,M., Norton,J., Sayavedra-Soto,L., Arciero,D., Hommes,N., Whittaker,M. and Arp,D.(2003) J. Bacteriol. 185 (9), 2759-2773 (2003).