ISNe2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004757 | ND | Nitrosomonas europaea | Nitrosomonas europaea ATCC 19718 |
DNA section
IS Length : 1005 bp
Ends
IR Length : 23/32
IRL : TGTTTGGTCCCGCATTGTGATGGTGTATTGTATGATTTGCTACCGACACA
IRR : TGTTTAGTCCCACTTTGTGATGGTATGGATTGATGATAAAACGTTCAGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCACTACC | TTGAAGACGC | 0 |
DNA sequence
TGTTTGGTCCCGCATTGTGATGGTGTATTGTATGATTTGCTACCGACACAGGAGGAATTATGGGACAGATATTACACGGGAGCGCCCGCACGACAGCGGC
GGTGCGTCGAGCGATACAACATAGTGAAGAGAGCCTGAATGTGCTGGCCAGGCGCTACGCCATCAATCCCAAGACGGTGGCGAAATGGAAGAAGCGCAAC
TTTACGCACGATGCCAGGATGGGTCCGAAAGAGCCGCGTTCCACGGTTCTGACACCAGAGCAGGAAGCCGCTTGCGTAGCCTTCCGCAAACATACGCTGC
TGCCGTTGGATGACTGCCTTTACGCCTTGCAAAGCAGCATTCCCACCCTGACCCGATCATCACTGCATCGCCTGTTCCAGCGCCACAACATCAGCCGCTT
ACCGGAGGTGGAAGGCGAGAAACCTGCCAGAAAAAAGTTCGCCCAATATCCCATCGGCTATTTCCATATCGACATTGCCGAAGTACGGACAGAAGAAGGC
AAACTGTATCTATTCGTCGCCATCGACCGAACCAGCAAGTTCGCTTATGCTGAATTACTGCCCAAGTACGGCAAGATGGAAGCAGCGCAGTTCCTGCGCA
ATCTCATCGCCGCCGTACCCTATAAAATCCATACCATCCTCACAGACAACGGCATCCAGTTCACCCACCGCAAAACAGACAGGCATGCTTTCTTGCATAT
CTTCGACCGTGTCTGCCTGGAAAATGGTACGGAACATCGCCTGACCCAGCCAAATCACCCCTGGACCAATGGTCAAGTCGAACGCATGAACCGCACCCTC
AAGGAAGCAACCGTCAAACGCTATCATTATGAAAATCATCAACAGTTGCGAGAGCATCTTTACAGCTTCCTGAATGCCTACAACTTCGCCAGGCGACTCA
AAACCTTACGAGGACTCACACCTTACGAATACATCATCAAATGCTGGCAAAACGAACCTGAACGTTTTATCATCAATCCATACCATCACAAAGTGGGACT
AAACA
GGTGCGTCGAGCGATACAACATAGTGAAGAGAGCCTGAATGTGCTGGCCAGGCGCTACGCCATCAATCCCAAGACGGTGGCGAAATGGAAGAAGCGCAAC
TTTACGCACGATGCCAGGATGGGTCCGAAAGAGCCGCGTTCCACGGTTCTGACACCAGAGCAGGAAGCCGCTTGCGTAGCCTTCCGCAAACATACGCTGC
TGCCGTTGGATGACTGCCTTTACGCCTTGCAAAGCAGCATTCCCACCCTGACCCGATCATCACTGCATCGCCTGTTCCAGCGCCACAACATCAGCCGCTT
ACCGGAGGTGGAAGGCGAGAAACCTGCCAGAAAAAAGTTCGCCCAATATCCCATCGGCTATTTCCATATCGACATTGCCGAAGTACGGACAGAAGAAGGC
AAACTGTATCTATTCGTCGCCATCGACCGAACCAGCAAGTTCGCTTATGCTGAATTACTGCCCAAGTACGGCAAGATGGAAGCAGCGCAGTTCCTGCGCA
ATCTCATCGCCGCCGTACCCTATAAAATCCATACCATCCTCACAGACAACGGCATCCAGTTCACCCACCGCAAAACAGACAGGCATGCTTTCTTGCATAT
CTTCGACCGTGTCTGCCTGGAAAATGGTACGGAACATCGCCTGACCCAGCCAAATCACCCCTGGACCAATGGTCAAGTCGAACGCATGAACCGCACCCTC
AAGGAAGCAACCGTCAAACGCTATCATTATGAAAATCATCAACAGTTGCGAGAGCATCTTTACAGCTTCCTGAATGCCTACAACTTCGCCAGGCGACTCA
AAACCTTACGAGGACTCACACCTTACGAATACATCATCAAATGCTGGCAAAACGAACCTGAACGTTTTATCATCAATCCATACCATCACAAAGTGGGACT
AAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
946 bp | 315 aa | 60 | 1005 | + | No |
Chemistry : DDE
ORF sequence :
MGQILHGSARTTAAVRRAIQHSEESLNVLARRYAINPKTVAKWKKRNFTHDARMGPKEPRSTVLTPEQEAACVAFRKHTLLPLDDCLYALQSSIPTLTRS
SLHRLFQRHNISRLPEVEGEKPARKKFAQYPIGYFHIDIAEVRTEEGKLYLFVAIDRTSKFAYAELLPKYGKMEAAQFLRNLIAAVPYKIHTILTDNGIQ
FTHRKTDRHAFLHIFDRVCLENGTEHRLTQPNHPWTNGQVERMNRTLKEATVKRYHYENHQQLREHLYSFLNAYNFARRLKTLRGLTPYEYIIKCWQNEP
ERFIINPYHHKVGLNNYPQQNGMVKWVTGH
SLHRLFQRHNISRLPEVEGEKPARKKFAQYPIGYFHIDIAEVRTEEGKLYLFVAIDRTSKFAYAELLPKYGKMEAAQFLRNLIAAVPYKIHTILTDNGIQ
FTHRKTDRHAFLHIFDRVCLENGTEHRLTQPNHPWTNGQVERMNRTLKEATVKRYHYENHQQLREHLYSFLNAYNFARRLKTLRGLTPYEYIIKCWQNEP
ERFIINPYHHKVGLNNYPQQNGMVKWVTGH
Blast result :
Comments
ISNe2 is 43% (ORF) aa similar to IS481v1.
The transposon use the first stop codon after the end of the element (15 aa ) .
The transposon use the first stop codon after the end of the element (15 aa ) .
References
1] Chain,P., Lamerdin,J., Larimer,F., Regala,W., Lao,V., Land,M., Hauser,L., Hooper,A., Klotz,M., Norton,J., Sayavedra-Soto,L., Arciero,D., Hommes,N., Whittaker,M. and Arp,D.(2003) J. Bacteriol. 185 (9), 2759-2773 (2003).