ISMva2
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008726 | ND | Mycobacterium vanbaalenii | Mycobacterium vanbaalenii PYR-1 |
DNA section
IS Length : 1966 bp
Ends
IR Length : 36/52
IRL : TGTGAAGGTTCAAGACATGTTGGACGACAAGGGTTCTAGACATCCTTGAC
IRR : TGTGCGGTTTCAGAACATGCTTGACGGTTGTGCTTCAGGACATATTTGAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGTTGTTCG | TTGACAGTGT | 0 |
DNA sequence
TGTGAAGGTTCAAGACATGTTGGACGACAAGGGTTCTAGACATCCTTGACGGGTTCAGGACTTGCTTGACGGGTCTGGTTTGATCTTGATCTTGTGACTC
AACAGCTTCCGAACAGTCCCAACGATTGGGTGATCGAGCACAGGTACCGAGCGGTGCGTCAGGTACTCGACGGGGTCTCCAAGAGCCAGGTGGCGCAGGA
ATGCGGGGCGTCACGGCAATCCGTGCACTCATGGGTCATCCGCTACGAGGCCCTCGGCGTCGCGGGATTGGCCGACCGATCACGGCGGCCGCTGACCTCG
CCCAACGAACTGTCGCCGGCGGTGGTGGCGATGGTCTGCGAACTGCGCCGCACCTACCCACGCTGGGGCGCTCAACGCATCGCCCACGAGCTGGCACTGC
GCGGCGTGGACGCGCCACCCTCGCGGTCGAGCGTGTACCGAATCCTGGTACGGCACGGCTTGGTGGCCGCCCAGCAGCAGAACCACAAACGCAAGTACCG
ACGCTGGCAGCGCGACGCCCCGATGCAGCTGTGGCAGATCGACATCATGGGCGGGGTCTTCCTGGTCGATGGCCGTGAATGCAAGGTGGTCACCGGCATC
GACGACCACTCCCGGTTCGTCGTGATGGCGACTGTCGTCGCCGATCCCGGGGCTCGCGCGGTGTGCGCGGCCTTCACCGCGACCATGGCGATCTATGGTG
TGCCGTCAGAAGTGTTGACCGACAACGGGAAACAGTTCACGGGTCGGTTCACCAAGCCGTATCCGGCCGAGGTGCTGTTCGAACGGATTTGCCGCGAGAA
CGGCATCACCACGCGCTTGACCAAGCCTCGCTCGCCAACCACGACCGGCAAGATCGAACGCTTTCACAAGACGCTGCGTCGCGAGTTGCTGGATTCCGCC
GGCCCCTTCGCCAGCATCGAGGTGGCCCAGGAGGCGATCGATGCCTGGGTGCACGGCTACAACCACAGCCGTCCACATCAATCGCTGGGGATGGCGACGC
CGGCGACAATGTTCCGCCCGGCGCCCATCGAGGTGGTCCCGCCGGTTCCGGTGGACACCGAACCGCTGACTCCCGACGTCGTCGTCCCTCCCCGTCCCCG
GCGACACCTCCCACCGGCCACGGAGCACGCGTTGATCGAAGTCGTTCACGCCGTCGAATGGGAGGCCGTGCTGACACCGCGAGCGCGGCTCCTGCTGCCC
GGTGATCAACAGTTCAAGTTCACCGCCGCGCTGGCTCGACGCGAGGTCACGGTATGGGCCAGCGACCGCAGCATCCACATCGTGCTCGACGGGACGGTGA
TCCGCACACGGCCGTCACGGCTGTCCGAACACGACCTGCGCGATCTGCTGCGGCGCGGTGCACGCATCGCGGGACCCGAGCCGGCACGCGGGGCCGCCAC
CATCGACATACTGACCACCAGCGCGGTGATCGAGGTCGCGCGCACCGTCTCCCGCGACGGCTGCATCGGACTCGGCGGTGACAAGGTGCTGCTGGAGTCG
ACGTTGGTCGGTCAGCGCGTCACCCTGCGCTTCGAGGGCGCCCTGATGCACGTCGTGGCCAACGGCCGGCTGGTCAAGACGATGCCCGCGCCGCTGCCGC
CCGATCAGCGTGCGACTCTGCGCGGCGCACGGCCCACCTCCGAGCCATTGCCGCCACCGGCACCCCCGAACCGAGCCATGCGACGAGTCGCGGCCAACGG
CACGATCACCATCGCCGGCCAACGCCTACGGGTAGGACGCAGCTACCAAGGACGAACGGTCGCTGTCGCCATCGACGACACCGTCTTTCGCGTCTTCATC
GACGGCACCGAGATATGCACCCACGCAAGACGAACCGATACCGACATCACCATCTTCAAGGCCTACCCCCGCCGACATGGCACCTGACCATCCGAAGATG
AACGCAGACCGAATCCGTCAAATATGTCCTGAAGCACAACCGTCAAGCATGTTCTGAAACCGCACA
AACAGCTTCCGAACAGTCCCAACGATTGGGTGATCGAGCACAGGTACCGAGCGGTGCGTCAGGTACTCGACGGGGTCTCCAAGAGCCAGGTGGCGCAGGA
ATGCGGGGCGTCACGGCAATCCGTGCACTCATGGGTCATCCGCTACGAGGCCCTCGGCGTCGCGGGATTGGCCGACCGATCACGGCGGCCGCTGACCTCG
CCCAACGAACTGTCGCCGGCGGTGGTGGCGATGGTCTGCGAACTGCGCCGCACCTACCCACGCTGGGGCGCTCAACGCATCGCCCACGAGCTGGCACTGC
GCGGCGTGGACGCGCCACCCTCGCGGTCGAGCGTGTACCGAATCCTGGTACGGCACGGCTTGGTGGCCGCCCAGCAGCAGAACCACAAACGCAAGTACCG
ACGCTGGCAGCGCGACGCCCCGATGCAGCTGTGGCAGATCGACATCATGGGCGGGGTCTTCCTGGTCGATGGCCGTGAATGCAAGGTGGTCACCGGCATC
GACGACCACTCCCGGTTCGTCGTGATGGCGACTGTCGTCGCCGATCCCGGGGCTCGCGCGGTGTGCGCGGCCTTCACCGCGACCATGGCGATCTATGGTG
TGCCGTCAGAAGTGTTGACCGACAACGGGAAACAGTTCACGGGTCGGTTCACCAAGCCGTATCCGGCCGAGGTGCTGTTCGAACGGATTTGCCGCGAGAA
CGGCATCACCACGCGCTTGACCAAGCCTCGCTCGCCAACCACGACCGGCAAGATCGAACGCTTTCACAAGACGCTGCGTCGCGAGTTGCTGGATTCCGCC
GGCCCCTTCGCCAGCATCGAGGTGGCCCAGGAGGCGATCGATGCCTGGGTGCACGGCTACAACCACAGCCGTCCACATCAATCGCTGGGGATGGCGACGC
CGGCGACAATGTTCCGCCCGGCGCCCATCGAGGTGGTCCCGCCGGTTCCGGTGGACACCGAACCGCTGACTCCCGACGTCGTCGTCCCTCCCCGTCCCCG
GCGACACCTCCCACCGGCCACGGAGCACGCGTTGATCGAAGTCGTTCACGCCGTCGAATGGGAGGCCGTGCTGACACCGCGAGCGCGGCTCCTGCTGCCC
GGTGATCAACAGTTCAAGTTCACCGCCGCGCTGGCTCGACGCGAGGTCACGGTATGGGCCAGCGACCGCAGCATCCACATCGTGCTCGACGGGACGGTGA
TCCGCACACGGCCGTCACGGCTGTCCGAACACGACCTGCGCGATCTGCTGCGGCGCGGTGCACGCATCGCGGGACCCGAGCCGGCACGCGGGGCCGCCAC
CATCGACATACTGACCACCAGCGCGGTGATCGAGGTCGCGCGCACCGTCTCCCGCGACGGCTGCATCGGACTCGGCGGTGACAAGGTGCTGCTGGAGTCG
ACGTTGGTCGGTCAGCGCGTCACCCTGCGCTTCGAGGGCGCCCTGATGCACGTCGTGGCCAACGGCCGGCTGGTCAAGACGATGCCCGCGCCGCTGCCGC
CCGATCAGCGTGCGACTCTGCGCGGCGCACGGCCCACCTCCGAGCCATTGCCGCCACCGGCACCCCCGAACCGAGCCATGCGACGAGTCGCGGCCAACGG
CACGATCACCATCGCCGGCCAACGCCTACGGGTAGGACGCAGCTACCAAGGACGAACGGTCGCTGTCGCCATCGACGACACCGTCTTTCGCGTCTTCATC
GACGGCACCGAGATATGCACCCACGCAAGACGAACCGATACCGACATCACCATCTTCAAGGCCTACCCCCGCCGACATGGCACCTGACCATCCGAAGATG
AACGCAGACCGAATCCGTCAAATATGTCCTGAAGCACAACCGTCAAGCATGTTCTGAAACCGCACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1794 bp | 597 aa | 94 | 1887 | + | No |
Chemistry : DDE
ORF sequence :
MTQQLPNSPNDWVIEHRYRAVRQVLDGVSKSQVAQECGASRQSVHSWVIRYEALGVAGLADRSRRPLTSPNELSPAVVAMVCELRRTYPRWGAQRIAHEL
ALRGVDAPPSRSSVYRILVRHGLVAAQQQNHKRKYRRWQRDAPMQLWQIDIMGGVFLVDGRECKVVTGIDDHSRFVVMATVVADPGARAVCAAFTATMAI
YGVPSEVLTDNGKQFTGRFTKPYPAEVLFERICRENGITTRLTKPRSPTTTGKIERFHKTLRRELLDSAGPFASIEVAQEAIDAWVHGYNHSRPHQSLGM
ATPATMFRPAPIEVVPPVPVDTEPLTPDVVVPPRPRRHLPPATEHALIEVVHAVEWEAVLTPRARLLLPGDQQFKFTAALARREVTVWASDRSIHIVLDG
TVIRTRPSRLSEHDLRDLLRRGARIAGPEPARGAATIDILTTSAVIEVARTVSRDGCIGLGGDKVLLESTLVGQRVTLRFEGALMHVVANGRLVKTMPAP
LPPDQRATLRGARPTSEPLPPPAPPNRAMRRVAANGTITIAGQRLRVGRSYQGRTVAVAIDDTVFRVFIDGTEICTHARRTDTDITIFKAYPRRHGT
ALRGVDAPPSRSSVYRILVRHGLVAAQQQNHKRKYRRWQRDAPMQLWQIDIMGGVFLVDGRECKVVTGIDDHSRFVVMATVVADPGARAVCAAFTATMAI
YGVPSEVLTDNGKQFTGRFTKPYPAEVLFERICRENGITTRLTKPRSPTTTGKIERFHKTLRRELLDSAGPFASIEVAQEAIDAWVHGYNHSRPHQSLGM
ATPATMFRPAPIEVVPPVPVDTEPLTPDVVVPPRPRRHLPPATEHALIEVVHAVEWEAVLTPRARLLLPGDQQFKFTAALARREVTVWASDRSIHIVLDG
TVIRTRPSRLSEHDLRDLLRRGARIAGPEPARGAATIDILTTSAVIEVARTVSRDGCIGLGGDKVLLESTLVGQRVTLRFEGALMHVVANGRLVKTMPAP
LPPDQRATLRGARPTSEPLPPPAPPNRAMRRVAANGTITIAGQRLRVGRSYQGRTVAVAIDDTVFRVFIDGTEICTHARRTDTDITIFKAYPRRHGT
Blast result :
Comments
ISMva2is 79% (ORF) aa similar to ISSco2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,Anderson,I.J., Miller,C. and Richardson,P.(2006) Direct submission GenBank.