ISMsm9

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1098 bp

Ends


IR Length : 24/30

IRL : TGTACTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACAAGACGAAG
IRR : TGTACTGACCTGAGAGGTTAGGTACACGGCTGGCTGGTGGTTGACCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCCTTGGCGCCCTAGCTGGGCCCTAA6

DNA sequence

TGTACTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACAAGACGAAGACCTCCGAGTGGAGTGCGAGCTGTCTAGGAACGCTCACCGATCTCGGAGG
TCTTCGTGGTTCACCGTAATGCCCCTTTGTCTGAAACTGGTCGTCTGCGTCTGGCTCGTTGCGTTGTCGATGACGGGTGGTCGCGTCGTCGCGCGGCCGA
ACGCTTCCAGGTGTCGGTGACCACTGTCTGTCGGTGGGTGAACCGCTACCTCGAACTGGGCGAGGCCGGAATGGCTGACCGCAGCTCACGACCGCACCAC
AGCCCCAACCGCACCCCGACGCGGACCGAGCGACGCATCATCGGCGTGCGTGTCACCCGGCGTTGGGGGCCCGCTCGGATCGCCTACCTGCTGCGATTGA
ATGTCTCCACGGTGCACAACGTGCTGCGCCGCTACCGCATCGCGCGACTGCGCTGGCTCGACCGCGCCACCGGCCGCGTCGTGCGGCGCATGGAATCGGC
GGCCTGCGGCGATCTGGTGCACGCCGATGTCAAGAAACTCGGCAAGATTCCCGCCGGCGGCGGCTGGCGCATGCTCGGCAGAACAGCGGGACGGAAGAAC
TCGCTGGCCGACAAGAGCAGCGGCGTCAAAACCAGAAACGGCGACCCCGCCCGGGGGTATCACTTCCTGCACTCCGCCTTGGACGCGCATTCCCGTCTGG
TGTACTCCGAGATGCTGGCCGACGAACGCAAAGACACCGCCTCGGAGTTCTGGAAGCGGGCCAACTCCTGGTTCTTCGAACAGGGGGTAATCGTTCGAAC
GGTGTTGACCGACAACGGATCCTGCTACCGATCGCACTCCTTTCGCGAGGCGCTCGGCGATGACATCGAGCATCGCCGCACGCGGCCGTATCGACCGCAG
ACCAACGGCAAAGTGGAACGCTTCCACCGAACCCTCGCCGACGAGTGGGCCTACGCCCGGCTCTACACCAGCGACGAACAACGCTGCCAGGAGTATCCCC
GCTGGTTGCACACCTACAATCACCACCGCGGCCACACAGCACTCGGCGGTCAACCACCAGCCAGCCGTGTACCTAACCTCTCAGGTCAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa1061098+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVHRNAPLSETGRLRLARCVVDDGWSRRRAAERFQVSVTTVCRWVNRYLELGEAGMADRSSRPHHSPNRTPTRTERRIIGVRVTRRWGPARIAYLLRLNV
STVHNVLRRYRIARLRWLDRATGRVVRRMESAACGDLVHADVKKLGKIPAGGGWRMLGRTAGRKNSLADKSSGVKTRNGDPARGYHFLHSALDAHSRLVY
SEMLADERKDTASEFWKRANSWFFEQGVIVRTVLTDNGSCYRSHSFREALGDDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDEQRCQEYPRW
LHTYNHHRGHTALGGQPPASRVPNLSGQYT

 

Blast result :
Comments
ISMsm9 is 73% aa similar to ISAni1. The stop codon is in the DR.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct submission GenBank.