ISPca3
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007498 | ND | Pelobacter carbinolicus | Pelobacter carbinolicus DSM 2380 |
DNA section
IS Length : 1077 bp
Ends
IR Length : 27/40
IRL : TGTTGGGTCCCGGATGATTCCATTAGCAGAAAAAGCTTCCCGTTATTCTT
IRR : TGTCAGGTCCCGCATGATTCCTGACCTGTTTACGGAAAAGTTTTGGTTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGTCTTTATG | GATATT | TAACGAAATT | 6 |
DNA sequence
TGTTGGGTCCCGGATGATTCCATTAGCAGAAAAAGCTTCCCGTTATTCTTAGCTCGGGATATGCTTTTTGATATTCTCTGCGGTGAAATCTAAAGGAGTC
TGACATGACGATACGGTTACACGCTAATGCCACAACGACCCCGAAAATCCGACGATATATCCAAGAGTCGGAAAAATCGCACAAGGCTTTAGCTAAAGAA
CTGGGCATATCCATTGACACGGTACGTCGCTGGCGCAAACGTGACGATGTTCACGATCGGTCTCATACGGCACACCGACTGAATACAACGATGACCGAAG
CCCAGGAAGCTGTTGTCATCGAGTTGCGTCGCTCTTTGTTGTTGTCTCTCGATGATCTCCTGGTCGTCACTCGGGAATTTGTCAATGCTGACGTCTCTCG
TGCGGGACTTGACCGTTGTTTGCGACGACATGGGGTATCCCGATTGGCGGACCTGATCCCGAAAGAGGAAACGGCCAACAACAAGCCCAAAACATTTAAA
AACTACGATCCGGGGTTCGTTCATGTCGATATCAAATATTTGCCACAGATGCCGGACGAAACCTCTCGGCGTTACCTGTTTGTAGGCATCGACCGTGCTA
CCCGCTGGGTTTACCTGGAAGTGTGCAAGAGCAAATCCGCCCAAGCCGCAAAGGGCTTTTTGAATCGCCTGGTAGCCAAAGCGCCATTTGTGATCAAAAA
ATTGCTCACCGACAACGACAAGGCATTCACGGATCGATTTTCCACTGCTGGAGAGAGAAAGCCAACAGGGAATCATGTATTCGACAAAACCTGCGTTCAG
CATGGTATTGAACATCGGCTTATTCCTCCACGCCACCCTCAGACCAACGGGATGGTTGAGCGATTCAACGGTCGCATCAGCGAGGTTTTGGCAACAACCC
GGTTCGATTCCGCCGAAAATTTGGAGCAGACATTGTTACGTTATGGTTATCTATACAACCAGCATATTCCTCAGCGAGCGTTGGGGCATAAAACTCCCAT
ACAAGCTCTGAAGGATTGGCAAAAAAAGAAACCAAAACTTTTCCGTAAACAGGTCAGGAATCATGCGGGACCTGACA
TGACATGACGATACGGTTACACGCTAATGCCACAACGACCCCGAAAATCCGACGATATATCCAAGAGTCGGAAAAATCGCACAAGGCTTTAGCTAAAGAA
CTGGGCATATCCATTGACACGGTACGTCGCTGGCGCAAACGTGACGATGTTCACGATCGGTCTCATACGGCACACCGACTGAATACAACGATGACCGAAG
CCCAGGAAGCTGTTGTCATCGAGTTGCGTCGCTCTTTGTTGTTGTCTCTCGATGATCTCCTGGTCGTCACTCGGGAATTTGTCAATGCTGACGTCTCTCG
TGCGGGACTTGACCGTTGTTTGCGACGACATGGGGTATCCCGATTGGCGGACCTGATCCCGAAAGAGGAAACGGCCAACAACAAGCCCAAAACATTTAAA
AACTACGATCCGGGGTTCGTTCATGTCGATATCAAATATTTGCCACAGATGCCGGACGAAACCTCTCGGCGTTACCTGTTTGTAGGCATCGACCGTGCTA
CCCGCTGGGTTTACCTGGAAGTGTGCAAGAGCAAATCCGCCCAAGCCGCAAAGGGCTTTTTGAATCGCCTGGTAGCCAAAGCGCCATTTGTGATCAAAAA
ATTGCTCACCGACAACGACAAGGCATTCACGGATCGATTTTCCACTGCTGGAGAGAGAAAGCCAACAGGGAATCATGTATTCGACAAAACCTGCGTTCAG
CATGGTATTGAACATCGGCTTATTCCTCCACGCCACCCTCAGACCAACGGGATGGTTGAGCGATTCAACGGTCGCATCAGCGAGGTTTTGGCAACAACCC
GGTTCGATTCCGCCGAAAATTTGGAGCAGACATTGTTACGTTATGGTTATCTATACAACCAGCATATTCCTCAGCGAGCGTTGGGGCATAAAACTCCCAT
ACAAGCTCTGAAGGATTGGCAAAAAAAGAAACCAAAACTTTTCCGTAAACAGGTCAGGAATCATGCGGGACCTGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 973 bp | 324 aa | 105 | 1077 | + | No |
Chemistry : DDE
ORF sequence :
MTIRLHANATTTPKIRRYIQESEKSHKALAKELGISIDTVRRWRKRDDVHDRSHTAHRLNTTMTEAQEAVVIELRRSLLLSLDDLLVVTREFVNADVSRA
GLDRCLRRHGVSRLADLIPKEETANNKPKTFKNYDPGFVHVDIKYLPQMPDETSRRYLFVGIDRATRWVYLEVCKSKSAQAAKGFLNRLVAKAPFVIKKL
LTDNDKAFTDRFSTAGERKPTGNHVFDKTCVQHGIEHRLIPPRHPQTNGMVERFNGRISEVLATTRFDSAENLEQTLLRYGYLYNQHIPQRALGHKTPIQ
ALKDWQKKKPKLFRKQVRNHAGPD
GLDRCLRRHGVSRLADLIPKEETANNKPKTFKNYDPGFVHVDIKYLPQMPDETSRRYLFVGIDRATRWVYLEVCKSKSAQAAKGFLNRLVAKAPFVIKKL
LTDNDKAFTDRFSTAGERKPTGNHVFDKTCVQHGIEHRLIPPRHPQTNGMVERFNGRISEVLATTRFDSAENLEQTLLRYGYLYNQHIPQRALGHKTPIQ
ALKDWQKKKPKLFRKQVRNHAGPD
Blast result :
Comments
ISPca3 is 40% aa similar to IS481v1 .There is no codon stop.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R., Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N., Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J., Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C., Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and Richardson,P. (2006) Direct Submission GenBank.