ISRme14
- Family IS481
- Group
Isoform Synonym(s) ISRme5
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007973 | ND | Ralstonia metallidurans | Ralstonia metallidurans CH34 |
DNA section
IS Length : 1041 bp
Ends
IR Length : 20/22
IRL : TGTCGTGTCCCTGATGATTGGTTAATTGGTTCACGCCGTGGTTTACTCTT
IRR : TGTCGTGTCCCGGCTGATTGGTAACACGTCTGTTGAACAGTTCGGGGTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGTCCTAA | CGATCTCGGC | 0 |
DNA sequence
TGTCGTGTCCCTGATGATTGGTTAATTGGTTCACGCCGTGGTTTACTCTTGGCCCGAGAGGTCATGCTGGAGCTGAAACGATGCATCTGAGGCTGCACAA
GAACGCCACCACGACACCCAGGATCCGCGCCGAGATCCAGGTCAGCAAGGAGCCCATGAGGGTTCTGGCCCAGCGCTTTGGCGTGAGTGTCTCCACCATC
GCTCGCTGGAAGAAGCGTGCATCGGTTCATGACGCCTCCCATACCCCTCATCGACTGCAAACCACGCTGACGCCGGCCCAGGAGTCCATCGTGCTCGTCT
TGCGTAAAAGCCTGGGCCTTTCGCTGGATGACCTGCTGGCAGTCGTACGCGAGTTCATCCATCCGACCGTCTCACGCGCTGCCTTGCACCGCATGCTCAA
ACGCCATGGAGTGTCGGCGCGCGAGGCATTGAGCGTGGATCGCCCCAGGACCAAGCCGTTCAAGGCCTACGAGCCCGGCTTCGTCCACATCGATGTGAAG
TACCTGCCGCAGATGGCGGACGAAACCACGCGGCGTTACCTGTTTGTGGCCATTGATCGCGCCACCCGCTGGGTGTTCGTGCGTGTCTATGCCAGCAAGA
GCGCTACCAACGCCCGGCGCTTCCTGAAGGAATTGCACAAGGCCGCTGCCTTCCGTATCCGAACGATCCTGACCGACAACGGCAAGGAATTCACGGATCG
CTTCATCACACGGGGAGAGCGTACGCCGACCGGCAGGCATCAGTTCGATCAGCTCTGCGAGGAGCTAGGCATTGAGCATCGCCTGACCCGCCCAAAACAC
CCGCAGACCAACGGCATGGTTGAACGCTTCAACGGGCGCATCGCCGACATCCTGCGCACCCATCACTTCCATTCCGGCGAAGAACTTGAGGCCACCATCC
TGCGGTATGTCTGGCTGTACAATCACCAACTGCCACAGAAAGCCTTGGGGCATGTCAGCCCCATCCAGGCCATGAAACAATGGCAGCGATCACACCCCGA
ACTGTTCAACAGACGTGTTACCAATCAGCCGGGACACGACA
GAACGCCACCACGACACCCAGGATCCGCGCCGAGATCCAGGTCAGCAAGGAGCCCATGAGGGTTCTGGCCCAGCGCTTTGGCGTGAGTGTCTCCACCATC
GCTCGCTGGAAGAAGCGTGCATCGGTTCATGACGCCTCCCATACCCCTCATCGACTGCAAACCACGCTGACGCCGGCCCAGGAGTCCATCGTGCTCGTCT
TGCGTAAAAGCCTGGGCCTTTCGCTGGATGACCTGCTGGCAGTCGTACGCGAGTTCATCCATCCGACCGTCTCACGCGCTGCCTTGCACCGCATGCTCAA
ACGCCATGGAGTGTCGGCGCGCGAGGCATTGAGCGTGGATCGCCCCAGGACCAAGCCGTTCAAGGCCTACGAGCCCGGCTTCGTCCACATCGATGTGAAG
TACCTGCCGCAGATGGCGGACGAAACCACGCGGCGTTACCTGTTTGTGGCCATTGATCGCGCCACCCGCTGGGTGTTCGTGCGTGTCTATGCCAGCAAGA
GCGCTACCAACGCCCGGCGCTTCCTGAAGGAATTGCACAAGGCCGCTGCCTTCCGTATCCGAACGATCCTGACCGACAACGGCAAGGAATTCACGGATCG
CTTCATCACACGGGGAGAGCGTACGCCGACCGGCAGGCATCAGTTCGATCAGCTCTGCGAGGAGCTAGGCATTGAGCATCGCCTGACCCGCCCAAAACAC
CCGCAGACCAACGGCATGGTTGAACGCTTCAACGGGCGCATCGCCGACATCCTGCGCACCCATCACTTCCATTCCGGCGAAGAACTTGAGGCCACCATCC
TGCGGTATGTCTGGCTGTACAATCACCAACTGCCACAGAAAGCCTTGGGGCATGTCAGCCCCATCCAGGCCATGAAACAATGGCAGCGATCACACCCCGA
ACTGTTCAACAGACGTGTTACCAATCAGCCGGGACACGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 961 bp | 320 aa | 81 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MHLRLHKNATTTPRIRAEIQVSKEPMRVLAQRFGVSVSTIARWKKRASVHDASHTPHRLQTTLTPAQESIVLVLRKSLGLSLDDLLAVVREFIHPTVSRA
ALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDRATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDN
GKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKHPQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQ
WQRSHPELFNRRVTNQPGHD
ALHRMLKRHGVSAREALSVDRPRTKPFKAYEPGFVHIDVKYLPQMADETTRRYLFVAIDRATRWVFVRVYASKSATNARRFLKELHKAAAFRIRTILTDN
GKEFTDRFITRGERTPTGRHQFDQLCEELGIEHRLTRPKHPQTNGMVERFNGRIADILRTHHFHSGEELEATILRYVWLYNHQLPQKALGHVSPIQAMKQ
WQRSHPELFNRRVTNQPGHD
Blast result :
Comments
ISRme14 is 42% (ORF) aa similar to IS1652. There is no stop codon .
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P.(2006) Direct submission GenBank.