ISRhba3

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXZ01000006 ND Rhodobacterales bacterium
Rhodobacterales bacterium HTCC2150
DNA section
IS Length : 999 bp

Ends


IR Length : 20/31

IRL : TGTAGATATGTACGGACTCTCGGGACACTTCCTGTAAACTCCCTTATTTA
IRR : TGTAGCCTAGACGAGCCTGCGGGACACTTGTGGGGTTACTGTAGCTTGTC

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGCAGGATTATTTGTGAT0

DNA sequence

TGTAGATATGTACGGACTCTCGGGACACTTCCTGTAAACTCCCTTATTTAGGGATGGAGGAAGTTTCCATGACGAACGAAGAACGCGACATTCAACGCAA
ATTGAGGGTGCTTCAACACGCCGAAAAGATCGGCAATGCCCGCAAAGCCTGTCGGTATTTTGGGATTGGGAGATCCAGCTTCTATAGATGGCGGGATGCG
TATCAAAAGCATGGCGAATCTGGTCTGAAGAATGCCAAATCTATTCCAAAGAACCCTGCCAATCAAACGCCGCCAGAGATCGTGGAGAAGGTTCTGTATC
TACGCCGCAAGTATCACCTCGGGCCCATCAGGATCGTCGGTATTTGGCGCGCTATCACGGCATCAAAATCTCGGATGCAGGGGTTTACCGTATCCTCAAG
CGCAATGGTCTCAACCGACTACCCAGAGGCACACGAATGCGTAAATTACACACAAAACGCTATCAGAAACAGGTGCCAGGACACCATATCCAAGTTGACG
TCAAGTTTCTGACATTCAAAGGAAAACGCGGCGAGAAAGTACGCCGCTTCCAGTTCACCGCGATCGATGATGCGACAAGAGTTCGGGCCCTTAAGATCTA
CGAGAAACACACGCAGGCAAGCGCAATCGACTTCATTGATCACATCATTGAAAAGTTCCCGTTCCGTATTCGTGAAGTGCGGACAGATAACGGCCACGAG
TTCCAAGCCAAATTCCATTGGCATGTTGAAGATGTTGGGATCAGGCACGCCTACATAAAACGCGGCACGCCCCAGTTAAATGGAAAAGTGGAGCGATCTC
ACCGATCCGATCAACAGGAGTTCTATCAGCTCCTGAGCTACAAGGGTGATGTCGATCTCGAGGCCAAGCTGGACGAGTGGGAACGGTTTTACAACTTCGC
CAGACCACATGGCGCGCACAATGGGCAGACCCCTTACGAAGCTCTCAGAGACAAGCTACAGTAACCCCACAAGTGTCCCGCAGGCTCGTCTAGGCTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
507 bp258 aa188694+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGCVSKAWRIWSEECQIYSKEPCQSNAARDRGEGSVSTPQVSPRAHQDRRYLARYHGIKISDAGVYRILKRNGLNRLPRGTRMRKLHTKRYQKQVPGHH
IQVDVKFLTFKGKRGEKVRRFQFTAIDDATRVRALKIYEKHTQASAIDFIDHIIEKFPFRIREVRTDNGHEFQAKFHWHVEDVGIRHAYIKRGTPQLNGK
VERSHRSDQQEFYQLLSYKGDVDLEAKLDEWERFYNFARPHGAHNGQTPYEALRDKLQ

 

Blast result :
Comments
ISRhba3 is 58% aa similar to ISVch1.
References
1] Giovannoni,S., Vergin,K., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.(2006)Direct submission GenBank.