ISRhba3
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXZ01000006 | ND | Rhodobacterales bacterium | Rhodobacterales bacterium HTCC2150 |
DNA section
IS Length : 999 bp
Ends
IR Length : 20/31
IRL : TGTAGATATGTACGGACTCTCGGGACACTTCCTGTAAACTCCCTTATTTA
IRR : TGTAGCCTAGACGAGCCTGCGGGACACTTGTGGGGTTACTGTAGCTTGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGCAGGAT | TATTTGTGAT | 0 |
DNA sequence
TGTAGATATGTACGGACTCTCGGGACACTTCCTGTAAACTCCCTTATTTAGGGATGGAGGAAGTTTCCATGACGAACGAAGAACGCGACATTCAACGCAA
ATTGAGGGTGCTTCAACACGCCGAAAAGATCGGCAATGCCCGCAAAGCCTGTCGGTATTTTGGGATTGGGAGATCCAGCTTCTATAGATGGCGGGATGCG
TATCAAAAGCATGGCGAATCTGGTCTGAAGAATGCCAAATCTATTCCAAAGAACCCTGCCAATCAAACGCCGCCAGAGATCGTGGAGAAGGTTCTGTATC
TACGCCGCAAGTATCACCTCGGGCCCATCAGGATCGTCGGTATTTGGCGCGCTATCACGGCATCAAAATCTCGGATGCAGGGGTTTACCGTATCCTCAAG
CGCAATGGTCTCAACCGACTACCCAGAGGCACACGAATGCGTAAATTACACACAAAACGCTATCAGAAACAGGTGCCAGGACACCATATCCAAGTTGACG
TCAAGTTTCTGACATTCAAAGGAAAACGCGGCGAGAAAGTACGCCGCTTCCAGTTCACCGCGATCGATGATGCGACAAGAGTTCGGGCCCTTAAGATCTA
CGAGAAACACACGCAGGCAAGCGCAATCGACTTCATTGATCACATCATTGAAAAGTTCCCGTTCCGTATTCGTGAAGTGCGGACAGATAACGGCCACGAG
TTCCAAGCCAAATTCCATTGGCATGTTGAAGATGTTGGGATCAGGCACGCCTACATAAAACGCGGCACGCCCCAGTTAAATGGAAAAGTGGAGCGATCTC
ACCGATCCGATCAACAGGAGTTCTATCAGCTCCTGAGCTACAAGGGTGATGTCGATCTCGAGGCCAAGCTGGACGAGTGGGAACGGTTTTACAACTTCGC
CAGACCACATGGCGCGCACAATGGGCAGACCCCTTACGAAGCTCTCAGAGACAAGCTACAGTAACCCCACAAGTGTCCCGCAGGCTCGTCTAGGCTACA
ATTGAGGGTGCTTCAACACGCCGAAAAGATCGGCAATGCCCGCAAAGCCTGTCGGTATTTTGGGATTGGGAGATCCAGCTTCTATAGATGGCGGGATGCG
TATCAAAAGCATGGCGAATCTGGTCTGAAGAATGCCAAATCTATTCCAAAGAACCCTGCCAATCAAACGCCGCCAGAGATCGTGGAGAAGGTTCTGTATC
TACGCCGCAAGTATCACCTCGGGCCCATCAGGATCGTCGGTATTTGGCGCGCTATCACGGCATCAAAATCTCGGATGCAGGGGTTTACCGTATCCTCAAG
CGCAATGGTCTCAACCGACTACCCAGAGGCACACGAATGCGTAAATTACACACAAAACGCTATCAGAAACAGGTGCCAGGACACCATATCCAAGTTGACG
TCAAGTTTCTGACATTCAAAGGAAAACGCGGCGAGAAAGTACGCCGCTTCCAGTTCACCGCGATCGATGATGCGACAAGAGTTCGGGCCCTTAAGATCTA
CGAGAAACACACGCAGGCAAGCGCAATCGACTTCATTGATCACATCATTGAAAAGTTCCCGTTCCGTATTCGTGAAGTGCGGACAGATAACGGCCACGAG
TTCCAAGCCAAATTCCATTGGCATGTTGAAGATGTTGGGATCAGGCACGCCTACATAAAACGCGGCACGCCCCAGTTAAATGGAAAAGTGGAGCGATCTC
ACCGATCCGATCAACAGGAGTTCTATCAGCTCCTGAGCTACAAGGGTGATGTCGATCTCGAGGCCAAGCTGGACGAGTGGGAACGGTTTTACAACTTCGC
CAGACCACATGGCGCGCACAATGGGCAGACCCCTTACGAAGCTCTCAGAGACAAGCTACAGTAACCCCACAAGTGTCCCGCAGGCTCGTCTAGGCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
507 bp | 258 aa | 188 | 694 | + | No |
Chemistry : DDE
ORF sequence :
MAGCVSKAWRIWSEECQIYSKEPCQSNAARDRGEGSVSTPQVSPRAHQDRRYLARYHGIKISDAGVYRILKRNGLNRLPRGTRMRKLHTKRYQKQVPGHH
IQVDVKFLTFKGKRGEKVRRFQFTAIDDATRVRALKIYEKHTQASAIDFIDHIIEKFPFRIREVRTDNGHEFQAKFHWHVEDVGIRHAYIKRGTPQLNGK
VERSHRSDQQEFYQLLSYKGDVDLEAKLDEWERFYNFARPHGAHNGQTPYEALRDKLQ
IQVDVKFLTFKGKRGEKVRRFQFTAIDDATRVRALKIYEKHTQASAIDFIDHIIEKFPFRIREVRTDNGHEFQAKFHWHVEDVGIRHAYIKRGTPQLNGK
VERSHRSDQQEFYQLLSYKGDVDLEAKLDEWERFYNFARPHGAHNGQTPYEALRDKLQ
Blast result :
Comments
ISRhba3 is 58% aa similar to ISVch1.
References
1] Giovannoni,S., Vergin,K., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.(2006)Direct submission GenBank.