ISVei3
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008786 | ND | Verminephrobacter eiseniae | Verminephrobacter eiseniae EF01-2 |
DNA section
IS Length : 1080 bp
Ends
IR Length : 15/17
IRL : TGTATCATCCCGGACGACTGAATAGACTCCAAACGCTATCCGCTGTTCAT
IRR : TGTCGCATCCCGGACGATCATATGGCCGCTTGTGAAACAGATGCGGGTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTTCACTAGG | CTGCCATGAA | 0 |
DNA sequence
TGTATCATCCCGGACGACTGAATAGACTCCAAACGCTATCCGCTGTTCATGGCCAGAGCAGTCCTGCAGAAGCGGATAGAGTCCTTGCAATCCACCCCGG
GGAGTGTCAAGCCATGTCGATGGCCCTGCACAAGAACGCTCGCACCACGCCGGCCGTGCGTGCCGAGATAGCCGCCAGTAGCCAGACCGCCAGTGTCTTG
GCCCAGCGCTATGGCATCACCGAACAGACGGTCTACAAGTGGAAGAAACGCGAGGTCTTCGTGGACCGCTGTCACACAGCCCATCGCCTGCAGACCGTGC
TCACGCCTGCACAAGAGACCGTGGTGGTCCACCTGCGGCGCACCTTGCTGCTGCCCCTGGATGATCTGCTGGCCGTTACGCGGGAGTTCCTCTGCCCTGA
TGTGTCACGCTCGGGGCTGGACCGGTGCCTGCGCCGCCACGGGGTGGGCAACCTCGATGCCCTCAAGTCCCGGGAGCCTACGGTGACCCACCAGGCATTC
AAGAGCTACGAGCCGGGCTACGTGCACATGGATGTGAAATACCTGCCCCAGATGCGCGACGAGAGCCGCCGGCGCTACCTGTTCGTCGCCATCGACCGGG
CCACGCGATGGGTGTTCGTGCAGCTCAAGGCCAACAAGACGGCCGCCAGTGCACAGGCATTCCTGAAGACATTGCACAAGGCTTGCCCGATCAGGATCAA
CAAGTTGCTGACCGACAACGGCAAGGAGTTCACCGACCGACTGTTTGCCAGCGGCGAGCGCCAAGCCAGTGGCAACCATGAGTTCGACCAGTTGTGCCAG
GCGCTGGACATAGAGCATCGGCTGACCAAGCCCAGGACGCCGAGAACCAACGGCATGGTCGAGAGGTTCAATGGTCGCATAGCCGATGTCCTGAAGACCC
ACAGGTTCGACAGCCGCGAGGACATGGAGCAGACCTTGCTGCGCTATGTGGCCTTGTACAATCACCAACTGCCGCAGTCAGCGCTGGGCAGCAAAACGCC
TATGCAGGCCATGAAAGAGTGGCATCAGCAGCACCCGCATCTGTTTCACAAGCGGCCATATGATCGTCCGGGATGCGACA
GGAGTGTCAAGCCATGTCGATGGCCCTGCACAAGAACGCTCGCACCACGCCGGCCGTGCGTGCCGAGATAGCCGCCAGTAGCCAGACCGCCAGTGTCTTG
GCCCAGCGCTATGGCATCACCGAACAGACGGTCTACAAGTGGAAGAAACGCGAGGTCTTCGTGGACCGCTGTCACACAGCCCATCGCCTGCAGACCGTGC
TCACGCCTGCACAAGAGACCGTGGTGGTCCACCTGCGGCGCACCTTGCTGCTGCCCCTGGATGATCTGCTGGCCGTTACGCGGGAGTTCCTCTGCCCTGA
TGTGTCACGCTCGGGGCTGGACCGGTGCCTGCGCCGCCACGGGGTGGGCAACCTCGATGCCCTCAAGTCCCGGGAGCCTACGGTGACCCACCAGGCATTC
AAGAGCTACGAGCCGGGCTACGTGCACATGGATGTGAAATACCTGCCCCAGATGCGCGACGAGAGCCGCCGGCGCTACCTGTTCGTCGCCATCGACCGGG
CCACGCGATGGGTGTTCGTGCAGCTCAAGGCCAACAAGACGGCCGCCAGTGCACAGGCATTCCTGAAGACATTGCACAAGGCTTGCCCGATCAGGATCAA
CAAGTTGCTGACCGACAACGGCAAGGAGTTCACCGACCGACTGTTTGCCAGCGGCGAGCGCCAAGCCAGTGGCAACCATGAGTTCGACCAGTTGTGCCAG
GCGCTGGACATAGAGCATCGGCTGACCAAGCCCAGGACGCCGAGAACCAACGGCATGGTCGAGAGGTTCAATGGTCGCATAGCCGATGTCCTGAAGACCC
ACAGGTTCGACAGCCGCGAGGACATGGAGCAGACCTTGCTGCGCTATGTGGCCTTGTACAATCACCAACTGCCGCAGTCAGCGCTGGGCAGCAAAACGCC
TATGCAGGCCATGAAAGAGTGGCATCAGCAGCACCCGCATCTGTTTCACAAGCGGCCATATGATCGTCCGGGATGCGACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 972 bp | 323 aa | 114 | 1085 | + | No |
Chemistry : DDE
ORF sequence :
MSMALHKNARTTPAVRAEIAASSQTASVLAQRYGITEQTVYKWKKREVFVDRCHTAHRLQTVLTPAQETVVVHLRRTLLLPLDDLLAVTREFLCPDVSRS
GLDRCLRRHGVGNLDALKSREPTVTHQAFKSYEPGYVHMDVKYLPQMRDESRRRYLFVAIDRATRWVFVQLKANKTAASAQAFLKTLHKACPIRINKLLT
DNGKEFTDRLFASGERQASGNHEFDQLCQALDIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFDSREDMEQTLLRYVALYNHQLPQSALGSKTPMQAM
KEWHQQHPHLFHKRPYDRPGCDT
GLDRCLRRHGVGNLDALKSREPTVTHQAFKSYEPGYVHMDVKYLPQMRDESRRRYLFVAIDRATRWVFVQLKANKTAASAQAFLKTLHKACPIRINKLLT
DNGKEFTDRLFASGERQASGNHEFDQLCQALDIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFDSREDMEQTLLRYVALYNHQLPQSALGSKTPMQAM
KEWHQQHPHLFHKRPYDRPGCDT
Blast result :
Comments
ISVei3 is 41% aa similar to IS481v2. The transposon used the first stop codon after the end of the element.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.(2007) Direct submission GenBank.