ISVch5
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002506 | ND | Vibrio cholerae | Vibrio cholerae O1 biovar eltor N16961 chromosome II |
DNA section
IS Length : 1197 bp
Ends
IR Length : 17/18
IRL : GGGAAGATGCGATTAAGTCTCTGATATGAGATCATAGCAACCATCAAAAC
IRR : GGGAAGCTGCGATTAAGTGGTGACTGAACTGCTCCAAGTCGCACGACAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCATTATTTA | TTGGAAAATTGC | 0 |
DNA sequence
GGGAAGATGCGATTAAGTCTCTGATATGAGATCATAGCAACCATCAAAACAGCAAGGATGAGGTGACCGATGAGTCATCAACTGACTTTCGCAGACGGTG
AGTTTTCCAATAAACGTCGACAAACCCGCAAAGAGCTCTTCCTCGCCAGAATGGAGAAGCTCCTACCATGGTCTCAGTTGCTCGCGGTGATCGAACCCTT
TTATCCCAAGGCGGGCAATGGCCGCCGCCCTTATCCTCTCGAAACCATGTTCCGCATCCACTGTATGCAGCAGTGGTACAGCTTAAGTGACGAAGCGATG
GAAGATGCACTCTATGAGATCGCGTCCATGCGGTTATTTGCCCATCTTTCGCTGGACAGAGCCATTCCCGACCGCACTACCATCATGAACTTCCGCCACT
TGTTAGAGCAGCATCAGCTGGGACGCAGTGTGTTCGAGCCGATCAATCAATGGCTCAGCGAGCGCGGCGTGCTGATGAAGCAAGGCACGTTGGTCGATGC
GACGATTATCGAAGCGCCCAGCTCGACCAAGAACAAAACCAACCAACGTGATCCCGAAATGCACCAGACCAAGAAAGGCAATGAGTGGCACTTCGGTATG
AAGGCACATATTGGTGTGGATGCCAAAAGTGGCCTCACTCATACACTGGTGACTACTGCCGCTAACGAGCATGATCTGAATCAATTGAGCAACCTGCTAC
ACGGTGATGAAGAATTCGTCTCCGGTGATGCAGGCTACCAAGGTGCACACAAGCGCGACGAGCTGAAGGGGGCAGACGTTGATTGGCTGATAGCCGAACG
TCCCGGTAAAGTTCGCGCCCTGAAAAAGCACCCTCGCAAAAACAAAGTGGCCATCCATATCGAATACTTGAAAGCCAGCATTCGGGCCAAAGTCGAGCAC
CCGTTTCGCATCATTAAATGCCAGTTTGGTTTTATCAAAGCCCGCTACAAAGGCCTGATGAAAAACGACAACCAATTAGCCATGCTATTCACCTTGGCGA
ATCTGGTCAAAGTCGACCAACTGATACGACGACAGGCGAGATCTGCCTGAAATCCGCCAATAGCCGGAGAAAACGGCTGAAAGTGGCTTGAAACGCTCGG
AATCGACAAAATACCACTCGTTTTACGAGTAAAAAGTCAGCGATCGCACTGTCGTGCGACTTGGAGCAGTTCAGTCACCACTTAATCGCAGCTTCCC
AGTTTTCCAATAAACGTCGACAAACCCGCAAAGAGCTCTTCCTCGCCAGAATGGAGAAGCTCCTACCATGGTCTCAGTTGCTCGCGGTGATCGAACCCTT
TTATCCCAAGGCGGGCAATGGCCGCCGCCCTTATCCTCTCGAAACCATGTTCCGCATCCACTGTATGCAGCAGTGGTACAGCTTAAGTGACGAAGCGATG
GAAGATGCACTCTATGAGATCGCGTCCATGCGGTTATTTGCCCATCTTTCGCTGGACAGAGCCATTCCCGACCGCACTACCATCATGAACTTCCGCCACT
TGTTAGAGCAGCATCAGCTGGGACGCAGTGTGTTCGAGCCGATCAATCAATGGCTCAGCGAGCGCGGCGTGCTGATGAAGCAAGGCACGTTGGTCGATGC
GACGATTATCGAAGCGCCCAGCTCGACCAAGAACAAAACCAACCAACGTGATCCCGAAATGCACCAGACCAAGAAAGGCAATGAGTGGCACTTCGGTATG
AAGGCACATATTGGTGTGGATGCCAAAAGTGGCCTCACTCATACACTGGTGACTACTGCCGCTAACGAGCATGATCTGAATCAATTGAGCAACCTGCTAC
ACGGTGATGAAGAATTCGTCTCCGGTGATGCAGGCTACCAAGGTGCACACAAGCGCGACGAGCTGAAGGGGGCAGACGTTGATTGGCTGATAGCCGAACG
TCCCGGTAAAGTTCGCGCCCTGAAAAAGCACCCTCGCAAAAACAAAGTGGCCATCCATATCGAATACTTGAAAGCCAGCATTCGGGCCAAAGTCGAGCAC
CCGTTTCGCATCATTAAATGCCAGTTTGGTTTTATCAAAGCCCGCTACAAAGGCCTGATGAAAAACGACAACCAATTAGCCATGCTATTCACCTTGGCGA
ATCTGGTCAAAGTCGACCAACTGATACGACGACAGGCGAGATCTGCCTGAAATCCGCCAATAGCCGGAGAAAACGGCTGAAAGTGGCTTGAAACGCTCGG
AATCGACAAAATACCACTCGTTTTACGAGTAAAAAGTCAGCGATCGCACTGTCGTGCGACTTGGAGCAGTTCAGTCACCACTTAATCGCAGCTTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 70 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETMFRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIP
DRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLIAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND
NQLAMLFTLANLVKVDQLIRRQARSA
DRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLIAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND
NQLAMLFTLANLVKVDQLIRRQARSA
Blast result :
Comments
ISVch5 is 91% aa similar to IS5D.
References
1] Heidelberg,J.F., Eisen,J.A., Nelson,W.C., Clayton,R.A., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Umayam,L.A., Gill,S.R., Nelson,K.E., Read,T.D., Tettelin,H., Richardson,D., Ermolaeva,M.D., Vamathevan,J., Bass,S., Qin,H., Dragoi,I., Sellers,P., McDonald,L., Utterback,T., Fleishmann,R.D., Nierman,W.C., White,O., Salzberg,S.L., Smith,H.O., Colwell,R.R., Mekalanos,J.J., Venter,J.C. and Fraser,C.M. (2000) Nature 406 (6795), 477-483