ISVch5

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002506 ND Vibrio cholerae
Vibrio cholerae O1 biovar eltor N16961 chromosome II
DNA section
IS Length : 1197 bp

Ends


IR Length : 17/18

IRL : GGGAAGATGCGATTAAGTCTCTGATATGAGATCATAGCAACCATCAAAAC
IRR : GGGAAGCTGCGATTAAGTGGTGACTGAACTGCTCCAAGTCGCACGACAGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCATTATTTATTGGAAAATTGC0

DNA sequence

GGGAAGATGCGATTAAGTCTCTGATATGAGATCATAGCAACCATCAAAACAGCAAGGATGAGGTGACCGATGAGTCATCAACTGACTTTCGCAGACGGTG
AGTTTTCCAATAAACGTCGACAAACCCGCAAAGAGCTCTTCCTCGCCAGAATGGAGAAGCTCCTACCATGGTCTCAGTTGCTCGCGGTGATCGAACCCTT
TTATCCCAAGGCGGGCAATGGCCGCCGCCCTTATCCTCTCGAAACCATGTTCCGCATCCACTGTATGCAGCAGTGGTACAGCTTAAGTGACGAAGCGATG
GAAGATGCACTCTATGAGATCGCGTCCATGCGGTTATTTGCCCATCTTTCGCTGGACAGAGCCATTCCCGACCGCACTACCATCATGAACTTCCGCCACT
TGTTAGAGCAGCATCAGCTGGGACGCAGTGTGTTCGAGCCGATCAATCAATGGCTCAGCGAGCGCGGCGTGCTGATGAAGCAAGGCACGTTGGTCGATGC
GACGATTATCGAAGCGCCCAGCTCGACCAAGAACAAAACCAACCAACGTGATCCCGAAATGCACCAGACCAAGAAAGGCAATGAGTGGCACTTCGGTATG
AAGGCACATATTGGTGTGGATGCCAAAAGTGGCCTCACTCATACACTGGTGACTACTGCCGCTAACGAGCATGATCTGAATCAATTGAGCAACCTGCTAC
ACGGTGATGAAGAATTCGTCTCCGGTGATGCAGGCTACCAAGGTGCACACAAGCGCGACGAGCTGAAGGGGGCAGACGTTGATTGGCTGATAGCCGAACG
TCCCGGTAAAGTTCGCGCCCTGAAAAAGCACCCTCGCAAAAACAAAGTGGCCATCCATATCGAATACTTGAAAGCCAGCATTCGGGCCAAAGTCGAGCAC
CCGTTTCGCATCATTAAATGCCAGTTTGGTTTTATCAAAGCCCGCTACAAAGGCCTGATGAAAAACGACAACCAATTAGCCATGCTATTCACCTTGGCGA
ATCTGGTCAAAGTCGACCAACTGATACGACGACAGGCGAGATCTGCCTGAAATCCGCCAATAGCCGGAGAAAACGGCTGAAAGTGGCTTGAAACGCTCGG
AATCGACAAAATACCACTCGTTTTACGAGTAAAAAGTCAGCGATCGCACTGTCGTGCGACTTGGAGCAGTTCAGTCACCACTTAATCGCAGCTTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa701050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETMFRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIP
DRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGVDAKSGLTHTLVTTAANE
HDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLIAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND
NQLAMLFTLANLVKVDQLIRRQARSA

 

Blast result :
Comments
ISVch5 is 91% aa similar to IS5D.
References
1] Heidelberg,J.F., Eisen,J.A., Nelson,W.C., Clayton,R.A., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Umayam,L.A., Gill,S.R., Nelson,K.E., Read,T.D., Tettelin,H., Richardson,D., Ermolaeva,M.D., Vamathevan,J., Bass,S., Qin,H., Dragoi,I., Sellers,P., McDonald,L., Utterback,T., Fleishmann,R.D., Nierman,W.C., White,O., Salzberg,S.L., Smith,H.O., Colwell,R.R., Mekalanos,J.J., Venter,J.C. and Fraser,C.M. (2000) Nature 406 (6795), 477-483