ISVisp4
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio splendidus | Vibrio splendidus |
DNA section
IS Length : 1292 bp
Ends
IR Length : 22/27
IRL : TGTACCGTCCTAAATATGGTTGACACATTTCCAACATGAAATTGGAGAGT
IRR : TGACCCGTCCTGATATGGGTTGACACTTGATTGACTAAAACGCTCGATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTTTGTAT | GTG | AAAATAATAA | 3 |
DNA sequence
TGTACCGTCCTAAATATGGTTGACACATTTCCAACATGAAATTGGAGAGTGTCATGAAAACAACAAGTAGACGTACTCAACGAGATTATTCTCTTGCCTT
TAAATTGGCAGTCGTAAGCCAAGTTGAAAAAGGCGAAATGACTTATAAGCAAGCTCAAGAACGTTATGGGATCCAAGGTCGCTCTACCGTTTTAGTTTGG
CTTCGCAAACATGGTCAACTAGATTGGTCTAAAGGAATAGAACAATCGAGAGCGTTAGGAGCGGCTATGTCAAACTCTTCCTCAACTCAAACCCCAGAGC
AACGAATCAAAGAACTCGAGCAGCAATTAGAAGAAACTCAGCTCAAAGCTGAGTTCTTTGAAGCGGTTGTAAAAGTCATGGATCGAGATTTCGGAGTCCG
AATCTCAAAGAAGCGCAGGGCCGAGTTATTAAGGAAAAAGCGGTCAGAAAGTTGACCGTCACCAAAGCTTGTCACTTCATAGGTATTACACGACAAGCTT
TCTACAAGCGCTGTGTTGCAGAAATTCATCAGACAAAGAAAGATGAATCTGTGCTCGGTTTTGTGAAGGAGCAAAGGATGATGCACCCTCGAATAGGGGC
TCGTAAGATCAAGTATTTACTTGCTCAGAACGATATTGAAATCGGGCGAGACCGCTTATTCTCTCTGCTGAGAGTGAATCGATTATTAGTACAGAATCGA
AGGGCTTACCATCGAACCACAAACAGTAATCATCGCTTTTACTGCCATCCAAATCGAATCAAAGAAGGCTTAATACCGGAAGGACCGGAGCAATTATGGG
TTGCCGATATTACTTATCTAGCAACGCGGCGTGGTAGTACTTATCTCAGTTTAGTGACGGACGCTTACTCAAGAAAAATCGTGGGCTATCACATAAGTGA
TGATATGAAAGCTCACACGGTCAAGCAGGCCTTTTTAAACGCGCTGAAAGGGCGGAAGAATACAGGTGAGCTTGTCCATCACTCAGATAGAGGTGTTCAG
TACTGCTCTGTTGAATACCAAGAGTTGCATCGACAGTATGGTGTATCTTGCTCAATGACTGATGGCTATGACTGTTATCAGAATGCGTTGGCAGAGAGGG
TCAACGGAATATTGAAGATGGAGTATCTGTTGAATAAGCCTAATGATTTAGATGAAGCAAAGAAAATGGTCGCTGAATCAGTAAAAATCTATAATGAATA
TAGGCCTCACACAGCTCTAAAATACAAAACGCCCGATGAAGTACATCGAGCGTTTTAGTCAATCAAGTGTCAACCCATATCAGGACGGGTCA
TAAATTGGCAGTCGTAAGCCAAGTTGAAAAAGGCGAAATGACTTATAAGCAAGCTCAAGAACGTTATGGGATCCAAGGTCGCTCTACCGTTTTAGTTTGG
CTTCGCAAACATGGTCAACTAGATTGGTCTAAAGGAATAGAACAATCGAGAGCGTTAGGAGCGGCTATGTCAAACTCTTCCTCAACTCAAACCCCAGAGC
AACGAATCAAAGAACTCGAGCAGCAATTAGAAGAAACTCAGCTCAAAGCTGAGTTCTTTGAAGCGGTTGTAAAAGTCATGGATCGAGATTTCGGAGTCCG
AATCTCAAAGAAGCGCAGGGCCGAGTTATTAAGGAAAAAGCGGTCAGAAAGTTGACCGTCACCAAAGCTTGTCACTTCATAGGTATTACACGACAAGCTT
TCTACAAGCGCTGTGTTGCAGAAATTCATCAGACAAAGAAAGATGAATCTGTGCTCGGTTTTGTGAAGGAGCAAAGGATGATGCACCCTCGAATAGGGGC
TCGTAAGATCAAGTATTTACTTGCTCAGAACGATATTGAAATCGGGCGAGACCGCTTATTCTCTCTGCTGAGAGTGAATCGATTATTAGTACAGAATCGA
AGGGCTTACCATCGAACCACAAACAGTAATCATCGCTTTTACTGCCATCCAAATCGAATCAAAGAAGGCTTAATACCGGAAGGACCGGAGCAATTATGGG
TTGCCGATATTACTTATCTAGCAACGCGGCGTGGTAGTACTTATCTCAGTTTAGTGACGGACGCTTACTCAAGAAAAATCGTGGGCTATCACATAAGTGA
TGATATGAAAGCTCACACGGTCAAGCAGGCCTTTTTAAACGCGCTGAAAGGGCGGAAGAATACAGGTGAGCTTGTCCATCACTCAGATAGAGGTGTTCAG
TACTGCTCTGTTGAATACCAAGAGTTGCATCGACAGTATGGTGTATCTTGCTCAATGACTGATGGCTATGACTGTTATCAGAATGCGTTGGCAGAGAGGG
TCAACGGAATATTGAAGATGGAGTATCTGTTGAATAAGCCTAATGATTTAGATGAAGCAAAGAAAATGGTCGCTGAATCAGTAAAAATCTATAATGAATA
TAGGCCTCACACAGCTCTAAAATACAAAACGCCCGATGAAGTACATCGAGCGTTTTAGTCAATCAAGTGTCAACCCATATCAGGACGGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 54 | 455 | + | No |
Description : First part of the transposase
ORF sequence :
MKTTSRRTQRDYSLAFKLAVVSQVEKGEMTYKQAQERYGIQGRSTVLVWLRKHGQLDWSKGIEQSRALGAAMSNSSSTQTPEQRIKELEQQLEETQLKAE
FFEAVVKVMDRDFGVRISKRRRAELLRKKRSES
FFEAVVKVMDRDFGVRISKRRRAELLRKKRSES
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
807 bp | 268 aa | 452 | 1258 | + | No |
Description : Second part of the transposase
ORF sequence :
LTVTKACHFIGITRQAFYKRCVAEIHQTKKDESVLGFVKEQRMMHPRIGARKIKYLLAQNDIEIGRDRLFSLLRVNRLLVQNRRAYHRTTNSNHRFYCHP
NRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKGRKNTGELVHHSDRGVQYCSVEYQELHRQYGVSC
SMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRAF
NRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKGRKNTGELVHHSDRGVQYCSVEYQELHRQYGVSC
SMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRAF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1205 bp | 401 aa | 54 | 1258 | + | Yes |
Chemistry : DDE
ORF sequence :
MKTTSRRTQRDYSLAFKLAVVSQVEKGEMTYKQAQERYGIQGRSTVLVWLRKHGQLDWSKGIEQSRALGAAMSNSSSTQTPEQRIKELEQQLEETQLKAE
FFEAVVKVMDRDFGVRISKRRRAELLRKKAVRKLTVTKACHFIGITRQAFYKRCVAEIHQTKKDESVLGFVKEQRMMHPRIGARKIKYLLAQNDIEIGRD
RLFSLLRVNRLLVQNRRAYHRTTNSNHRFYCHPNRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKG
RKNTGELVHHSDRGVQYCSVEYQELHRQYGVSCSMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRA
F
FFEAVVKVMDRDFGVRISKRRRAELLRKKAVRKLTVTKACHFIGITRQAFYKRCVAEIHQTKKDESVLGFVKEQRMMHPRIGARKIKYLLAQNDIEIGRD
RLFSLLRVNRLLVQNRRAYHRTTNSNHRFYCHPNRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKG
RKNTGELVHHSDRGVQYCSVEYQELHRQYGVSCSMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRA
F
Blast result :
Comments
ISVisp4 is 71% (ORF A) aa similar to ISPsy11 and 74% (ORF B) to ISBcen7.
References
1] Didier Mazel (2007) Direct submission