ISVisp4

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio splendidus
Vibrio splendidus
DNA section
IS Length : 1292 bp

Ends


IR Length : 22/27

IRL : TGTACCGTCCTAAATATGGTTGACACATTTCCAACATGAAATTGGAGAGT
IRR : TGACCCGTCCTGATATGGGTTGACACTTGATTGACTAAAACGCTCGATGT

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTTTGTATGTGAAAATAATAA3

DNA sequence

TGTACCGTCCTAAATATGGTTGACACATTTCCAACATGAAATTGGAGAGTGTCATGAAAACAACAAGTAGACGTACTCAACGAGATTATTCTCTTGCCTT
TAAATTGGCAGTCGTAAGCCAAGTTGAAAAAGGCGAAATGACTTATAAGCAAGCTCAAGAACGTTATGGGATCCAAGGTCGCTCTACCGTTTTAGTTTGG
CTTCGCAAACATGGTCAACTAGATTGGTCTAAAGGAATAGAACAATCGAGAGCGTTAGGAGCGGCTATGTCAAACTCTTCCTCAACTCAAACCCCAGAGC
AACGAATCAAAGAACTCGAGCAGCAATTAGAAGAAACTCAGCTCAAAGCTGAGTTCTTTGAAGCGGTTGTAAAAGTCATGGATCGAGATTTCGGAGTCCG
AATCTCAAAGAAGCGCAGGGCCGAGTTATTAAGGAAAAAGCGGTCAGAAAGTTGACCGTCACCAAAGCTTGTCACTTCATAGGTATTACACGACAAGCTT
TCTACAAGCGCTGTGTTGCAGAAATTCATCAGACAAAGAAAGATGAATCTGTGCTCGGTTTTGTGAAGGAGCAAAGGATGATGCACCCTCGAATAGGGGC
TCGTAAGATCAAGTATTTACTTGCTCAGAACGATATTGAAATCGGGCGAGACCGCTTATTCTCTCTGCTGAGAGTGAATCGATTATTAGTACAGAATCGA
AGGGCTTACCATCGAACCACAAACAGTAATCATCGCTTTTACTGCCATCCAAATCGAATCAAAGAAGGCTTAATACCGGAAGGACCGGAGCAATTATGGG
TTGCCGATATTACTTATCTAGCAACGCGGCGTGGTAGTACTTATCTCAGTTTAGTGACGGACGCTTACTCAAGAAAAATCGTGGGCTATCACATAAGTGA
TGATATGAAAGCTCACACGGTCAAGCAGGCCTTTTTAAACGCGCTGAAAGGGCGGAAGAATACAGGTGAGCTTGTCCATCACTCAGATAGAGGTGTTCAG
TACTGCTCTGTTGAATACCAAGAGTTGCATCGACAGTATGGTGTATCTTGCTCAATGACTGATGGCTATGACTGTTATCAGAATGCGTTGGCAGAGAGGG
TCAACGGAATATTGAAGATGGAGTATCTGTTGAATAAGCCTAATGATTTAGATGAAGCAAAGAAAATGGTCGCTGAATCAGTAAAAATCTATAATGAATA
TAGGCCTCACACAGCTCTAAAATACAAAACGCCCGATGAAGTACATCGAGCGTTTTAGTCAATCAAGTGTCAACCCATATCAGGACGGGTCA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
402 bp133 aa54455+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MKTTSRRTQRDYSLAFKLAVVSQVEKGEMTYKQAQERYGIQGRSTVLVWLRKHGQLDWSKGIEQSRALGAAMSNSSSTQTPEQRIKELEQQLEETQLKAE
FFEAVVKVMDRDFGVRISKRRRAELLRKKRSES

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
807 bp268 aa4521258+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

LTVTKACHFIGITRQAFYKRCVAEIHQTKKDESVLGFVKEQRMMHPRIGARKIKYLLAQNDIEIGRDRLFSLLRVNRLLVQNRRAYHRTTNSNHRFYCHP
NRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKGRKNTGELVHHSDRGVQYCSVEYQELHRQYGVSC
SMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRAF

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1205 bp401 aa541258+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTTSRRTQRDYSLAFKLAVVSQVEKGEMTYKQAQERYGIQGRSTVLVWLRKHGQLDWSKGIEQSRALGAAMSNSSSTQTPEQRIKELEQQLEETQLKAE
FFEAVVKVMDRDFGVRISKRRRAELLRKKAVRKLTVTKACHFIGITRQAFYKRCVAEIHQTKKDESVLGFVKEQRMMHPRIGARKIKYLLAQNDIEIGRD
RLFSLLRVNRLLVQNRRAYHRTTNSNHRFYCHPNRIKEGLIPEGPEQLWVADITYLATRRGSTYLSLVTDAYSRKIVGYHISDDMKAHTVKQAFLNALKG
RKNTGELVHHSDRGVQYCSVEYQELHRQYGVSCSMTDGYDCYQNALAERVNGILKMEYLLNKPNDLDEAKKMVAESVKIYNEYRPHTALKYKTPDEVHRA
F

 

Blast result :
Comments
ISVisp4 is 71% (ORF A) aa similar to ISPsy11 and 74% (ORF B) to ISBcen7.
References
1] Didier Mazel (2007) Direct submission