ISVisp2

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Vibrio splendidus
Vibrio splendidus
DNA section
IS Length : 1571 bp

Ends


IR Length :

IRL : -tagacataATGACCCCCACGAAAGGTGCTAGCCTCCAATATCGTGGGTT
IRR : ggcgttgatATGACCCCCACTGTCAATTAAAAACGTAGAAGTTTCTCTCC

Insertion site


Left flankDirect repeatRight flankDR Length
ACATATTTCTCCTAGCTCCCGTTTTAAGCGGCTAATTACA0

DNA sequence

TAGACATAATGACCCCCACGAAAGGTGCTAGCCTCCAATATCGTGGGTTAGCTTAAAGCCAGAGCCATAATTAGTGCGTCAAACAACTAAATTTGGAGGC
TAGCATGAATAAAGATAGCATAATTTTTATTGGCTTAGATACGCATAAGTCATTTATTCAAGTCACTGTATTACAAGAACATCGTGGGGCAAATCCACTT
CACCTTGGCCGTATTAAATCGAATAAGTCCGCGTTGATTAAATTGGCCAAACAGCTGCAATCCAAGTATCCCAAAGCCACTCTGCACTTTGTCTATGAAG
CAGGACCATGTGGTTACTGGACTTATCGCTTAATGACGAGCCTTGGACACTGCTGCTATGTCGTCGCTCCATCACTTATACCTAAAAAGCCAGGCGATAG
AGTTAAAACCGACAAACGAGACGCTGCAAAGCTCGCCAAGCTGTTAAAAGCCGAAGAGCTCACACCCATCTATGTACCGGAAGCAAAAGATGAAGCCATT
CGAGACCTCTCGCGTGCCAGAGAAACCGCAATGAAAGATCTCAAAGACGCAAAATTCCAACTCAAAGGCTTTCTTCTTCGCAATAATATCCAAGCGACGG
TGAATGATAACTGGTCTAAAAAGCATCTACGGTGGCTAACCGACCTCATTCTTCCTCATCATAGTCAGCAAATCGTTTTACAAGAGATGATCATTACCAT
CAATGAGCGAATACAGCGGCTTCAACGACTCGATAATGAACTACTCCATCAAGTCAAAAACTGGCGATACTATCCTGTGGTGAAAGCCATTCAAGCTATG
CGTGGAGTCCGGTTACTCGTAGCACTCGGCACAATAGCCGAACTGGGTGACTTACGACGATTTGATCATCCAAGAAAGCTTATGGCTTACCTCGGACTCG
TTCCAACAGAAAACTCCAGTGGCGGTAAAACTCGTCGTGGCAGCTTAACAAAGTGTGGCAACAGTCGGGCCAGACGGTTGCTGGTCGAAGGCGCACACAC
CTATAAGCACAAAGCGAACATCTCTGTAGAGCTCCAACTAAGGCAAGAAGGACTGCCTAAAGAGATCGTCGATATCGCTTGGCAGGCCCAGCAAAGGTTA
TGTCGTCGTTACCAACGATTGCTACAAAAAGGTAAACACCGAAATGTCGTTGTAGTCGCCATCGCTAGAGAGATGATCGCTTACATCTGGGCGATTGCTC
GTGAAGTAGTCATCAGCGACGTCGATCCTAAAACTCGAATCGCTCGATTACCGGCATGAAGACAGAATTAGTGTTATCGCATTGGATAAAGCATCGGGAG
TGGCACAAACACCGGCGGCGTTAGGACGGCAATATAGCTTCGGCTGTATTGAACCACGAGCATAGACTGAAGACAGGTGCCACGACGGAACAAGTAAGGT
AGGCTCTACTCATCAAACGATGAGCAATCCACGTATATCAGCATGAGAACCGACGACATTACTTGCTTCATCTATGCGGTAACACTATCCCCTAAGCAAC
AAGAAAAGCTCTGATAATACAGGAGAGAAACTTCTACGTTTTTAATTGACAGTGGGGGTCATATCAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1155 bp384 aa1051259+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNKDSIIFIGLDTHKSFIQVTVLQEHRGANPLHLGRIKSNKSALIKLAKQLQSKYPKATLHFVYEAGPCGYWTYRLMTSLGHCCYVVAPSLIPKKPGDRV
KTDKRDAAKLAKLLKAEELTPIYVPEAKDEAIRDLSRARETAMKDLKDAKFQLKGFLLRNNIQATVNDNWSKKHLRWLTDLILPHHSQQIVLQEMIITIN
ERIQRLQRLDNELLHQVKNWRYYPVVKAIQAMRGVRLLVALGTIAELGDLRRFDHPRKLMAYLGLVPTENSSGGKTRRGSLTKCGNSRARRLLVEGAHTY
KHKANISVELQLRQEGLPKEIVDIAWQAQQRLCRRYQRLLQKGKHRNVVVVAIAREMIAYIWAIAREVVISDVDPKTRIARLPA

 

Blast result :
Comments
ISVisp2 is 49% aa similar to IS1533. There are 2 copies on chromosome I and 1 copy on chromosome II.
References
1] Didier Mazel (2007) Direct submission.