ISVisp2
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Vibrio splendidus | Vibrio splendidus |
DNA section
IS Length : 1571 bp
Ends
IR Length :
IRL : -tagacataATGACCCCCACGAAAGGTGCTAGCCTCCAATATCGTGGGTT
IRR : ggcgttgatATGACCCCCACTGTCAATTAAAAACGTAGAAGTTTCTCTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACATATTTCTCCTAGCTCCC | GTTTTAAGCGGCTAATTACA | 0 |
DNA sequence
TAGACATAATGACCCCCACGAAAGGTGCTAGCCTCCAATATCGTGGGTTAGCTTAAAGCCAGAGCCATAATTAGTGCGTCAAACAACTAAATTTGGAGGC
TAGCATGAATAAAGATAGCATAATTTTTATTGGCTTAGATACGCATAAGTCATTTATTCAAGTCACTGTATTACAAGAACATCGTGGGGCAAATCCACTT
CACCTTGGCCGTATTAAATCGAATAAGTCCGCGTTGATTAAATTGGCCAAACAGCTGCAATCCAAGTATCCCAAAGCCACTCTGCACTTTGTCTATGAAG
CAGGACCATGTGGTTACTGGACTTATCGCTTAATGACGAGCCTTGGACACTGCTGCTATGTCGTCGCTCCATCACTTATACCTAAAAAGCCAGGCGATAG
AGTTAAAACCGACAAACGAGACGCTGCAAAGCTCGCCAAGCTGTTAAAAGCCGAAGAGCTCACACCCATCTATGTACCGGAAGCAAAAGATGAAGCCATT
CGAGACCTCTCGCGTGCCAGAGAAACCGCAATGAAAGATCTCAAAGACGCAAAATTCCAACTCAAAGGCTTTCTTCTTCGCAATAATATCCAAGCGACGG
TGAATGATAACTGGTCTAAAAAGCATCTACGGTGGCTAACCGACCTCATTCTTCCTCATCATAGTCAGCAAATCGTTTTACAAGAGATGATCATTACCAT
CAATGAGCGAATACAGCGGCTTCAACGACTCGATAATGAACTACTCCATCAAGTCAAAAACTGGCGATACTATCCTGTGGTGAAAGCCATTCAAGCTATG
CGTGGAGTCCGGTTACTCGTAGCACTCGGCACAATAGCCGAACTGGGTGACTTACGACGATTTGATCATCCAAGAAAGCTTATGGCTTACCTCGGACTCG
TTCCAACAGAAAACTCCAGTGGCGGTAAAACTCGTCGTGGCAGCTTAACAAAGTGTGGCAACAGTCGGGCCAGACGGTTGCTGGTCGAAGGCGCACACAC
CTATAAGCACAAAGCGAACATCTCTGTAGAGCTCCAACTAAGGCAAGAAGGACTGCCTAAAGAGATCGTCGATATCGCTTGGCAGGCCCAGCAAAGGTTA
TGTCGTCGTTACCAACGATTGCTACAAAAAGGTAAACACCGAAATGTCGTTGTAGTCGCCATCGCTAGAGAGATGATCGCTTACATCTGGGCGATTGCTC
GTGAAGTAGTCATCAGCGACGTCGATCCTAAAACTCGAATCGCTCGATTACCGGCATGAAGACAGAATTAGTGTTATCGCATTGGATAAAGCATCGGGAG
TGGCACAAACACCGGCGGCGTTAGGACGGCAATATAGCTTCGGCTGTATTGAACCACGAGCATAGACTGAAGACAGGTGCCACGACGGAACAAGTAAGGT
AGGCTCTACTCATCAAACGATGAGCAATCCACGTATATCAGCATGAGAACCGACGACATTACTTGCTTCATCTATGCGGTAACACTATCCCCTAAGCAAC
AAGAAAAGCTCTGATAATACAGGAGAGAAACTTCTACGTTTTTAATTGACAGTGGGGGTCATATCAACGCC
TAGCATGAATAAAGATAGCATAATTTTTATTGGCTTAGATACGCATAAGTCATTTATTCAAGTCACTGTATTACAAGAACATCGTGGGGCAAATCCACTT
CACCTTGGCCGTATTAAATCGAATAAGTCCGCGTTGATTAAATTGGCCAAACAGCTGCAATCCAAGTATCCCAAAGCCACTCTGCACTTTGTCTATGAAG
CAGGACCATGTGGTTACTGGACTTATCGCTTAATGACGAGCCTTGGACACTGCTGCTATGTCGTCGCTCCATCACTTATACCTAAAAAGCCAGGCGATAG
AGTTAAAACCGACAAACGAGACGCTGCAAAGCTCGCCAAGCTGTTAAAAGCCGAAGAGCTCACACCCATCTATGTACCGGAAGCAAAAGATGAAGCCATT
CGAGACCTCTCGCGTGCCAGAGAAACCGCAATGAAAGATCTCAAAGACGCAAAATTCCAACTCAAAGGCTTTCTTCTTCGCAATAATATCCAAGCGACGG
TGAATGATAACTGGTCTAAAAAGCATCTACGGTGGCTAACCGACCTCATTCTTCCTCATCATAGTCAGCAAATCGTTTTACAAGAGATGATCATTACCAT
CAATGAGCGAATACAGCGGCTTCAACGACTCGATAATGAACTACTCCATCAAGTCAAAAACTGGCGATACTATCCTGTGGTGAAAGCCATTCAAGCTATG
CGTGGAGTCCGGTTACTCGTAGCACTCGGCACAATAGCCGAACTGGGTGACTTACGACGATTTGATCATCCAAGAAAGCTTATGGCTTACCTCGGACTCG
TTCCAACAGAAAACTCCAGTGGCGGTAAAACTCGTCGTGGCAGCTTAACAAAGTGTGGCAACAGTCGGGCCAGACGGTTGCTGGTCGAAGGCGCACACAC
CTATAAGCACAAAGCGAACATCTCTGTAGAGCTCCAACTAAGGCAAGAAGGACTGCCTAAAGAGATCGTCGATATCGCTTGGCAGGCCCAGCAAAGGTTA
TGTCGTCGTTACCAACGATTGCTACAAAAAGGTAAACACCGAAATGTCGTTGTAGTCGCCATCGCTAGAGAGATGATCGCTTACATCTGGGCGATTGCTC
GTGAAGTAGTCATCAGCGACGTCGATCCTAAAACTCGAATCGCTCGATTACCGGCATGAAGACAGAATTAGTGTTATCGCATTGGATAAAGCATCGGGAG
TGGCACAAACACCGGCGGCGTTAGGACGGCAATATAGCTTCGGCTGTATTGAACCACGAGCATAGACTGAAGACAGGTGCCACGACGGAACAAGTAAGGT
AGGCTCTACTCATCAAACGATGAGCAATCCACGTATATCAGCATGAGAACCGACGACATTACTTGCTTCATCTATGCGGTAACACTATCCCCTAAGCAAC
AAGAAAAGCTCTGATAATACAGGAGAGAAACTTCTACGTTTTTAATTGACAGTGGGGGTCATATCAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1155 bp | 384 aa | 105 | 1259 | + | No |
Chemistry : DEDD
ORF sequence :
MNKDSIIFIGLDTHKSFIQVTVLQEHRGANPLHLGRIKSNKSALIKLAKQLQSKYPKATLHFVYEAGPCGYWTYRLMTSLGHCCYVVAPSLIPKKPGDRV
KTDKRDAAKLAKLLKAEELTPIYVPEAKDEAIRDLSRARETAMKDLKDAKFQLKGFLLRNNIQATVNDNWSKKHLRWLTDLILPHHSQQIVLQEMIITIN
ERIQRLQRLDNELLHQVKNWRYYPVVKAIQAMRGVRLLVALGTIAELGDLRRFDHPRKLMAYLGLVPTENSSGGKTRRGSLTKCGNSRARRLLVEGAHTY
KHKANISVELQLRQEGLPKEIVDIAWQAQQRLCRRYQRLLQKGKHRNVVVVAIAREMIAYIWAIAREVVISDVDPKTRIARLPA
KTDKRDAAKLAKLLKAEELTPIYVPEAKDEAIRDLSRARETAMKDLKDAKFQLKGFLLRNNIQATVNDNWSKKHLRWLTDLILPHHSQQIVLQEMIITIN
ERIQRLQRLDNELLHQVKNWRYYPVVKAIQAMRGVRLLVALGTIAELGDLRRFDHPRKLMAYLGLVPTENSSGGKTRRGSLTKCGNSRARRLLVEGAHTY
KHKANISVELQLRQEGLPKEIVDIAWQAQQRLCRRYQRLLQKGKHRNVVVVAIAREMIAYIWAIAREVVISDVDPKTRIARLPA
Blast result :
Comments
ISVisp2 is 49% aa similar to IS1533. There are 2 copies on chromosome I and 1 copy on chromosome II.
References
1] Didier Mazel (2007) Direct submission.