ISSusp2

  • Family IS3
  • Group IS407
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AALV01000013 ND Sulfitobacter sp.
Sulfitobacter sp. EE-36
DNA section
IS Length : 1196 bp

Ends


IR Length : 33/48

IRL : GTAATCCCCCCCAAAATTAGCGGTGTTCAAAAGTAGAATTTTCTCGGCAA
IRR : GTAATCCCCCCATTTTTAATGGGGTCCAGCCGTAGAATTCAGGCGGCTGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGCGGCAGTCATGGGAAACGCGCAG0

DNA sequence

TGGGGTAATCCCCCCCAAAATTAGCGGTGTTCAAAAGTAGAATTTTCTCGGCAAGATATCTGAGGAGATTTACGATGAAGAACGGACGATACAGCGACGC
GCAAATCATGGCAGTGTTGAAGCAGGCGGAGGGCGGTGTGCCGGTCTCTGAGCTGTGCCGTGAGCATGGCATGAGCAGCGCCAGTTTCTATAAGTGGCGC
GCTAAGTTTGGCGGCATGGACGCGTCCTTGATGTCCGAGATGAAGGATATGGCGGAAGAGAACCGTCGTCTGAAGCGCATGTATGCCGAGATGAGCATGC
AAAATGATCTGCTGAAGGAAGCCCTTGGAAAAAAGCGTTAAGGCCGTCTCTGCGACGAGAGATGGCCATGAATGCGGTCGCACGACACGGCGTAAGCATC
GCGTCGGCGTGCCGGGCGTTCGAGATCAGCGAGACCTGCTACAGATACAGCCCTGTAATGAGCGACGAGAATGAAGAGATCGCCGATTGGCTGGAACGTC
TGACAGCAAACAAGCGCAACTGGGGCTTCGGCCTGTGCTTTCTGTATCTGCGCAACGTCCAGGGTTACGGCTGGAACCACAAGCGGGTCTATCGGATCTA
CTGCGAGCTGGAGCTAAACCTGCGTATCAAGCCCAAGAAACGCTTGAAGCGGGACAAGCCGGAACCCCTGTCTGTGCCTGATAAGCCCAATGAGACATGG
TCGATGGATTTCATGGCGGATCAGCTGGCAGATGGGCGCTCGATCAGGACATTGAACGTGCTGGATGACTTCAATCGTGAGGGCCTATGCATCGAAGTGG
ACTTCTCGCTGCCCGCAGAGAGAGTGGTCAGAAGCTTAAACCAGATCATCGAATGGCGCGGTCAACCGCAGACAATTCGCGTCGATAATGGCCCAGAATA
TATTAGTGGTAAGCTGATGGAATGGGCCGAAAAACGCAATGTTCGACTGGAATACATCCAGCCAGGCAAGCCACAACAAAATGCCTACATTGAACGCTAC
AACCGCACCGTTCGCGGCGAATGGCTTGGGCAATACATCTTCGAAACCATCGAGGAGGCACAAGACCAAGCAACTGAATGGCTCTGGACTTACAACAACG
AGCGACCCAACATGGGTATCGGCGGCATGACACCCGCCATGAAACTGAAAACAGCCGCCTGAATTCTACGGCTGGACCCCATTAAAAATGGGGGGATTAC
CA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
267 bp88 aa75341+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MKNGRYSDAQIMAVLKQAEGGVPVSELCREHGMSSASFYKWRAKFGGMDASLMSEMKDMAEENRRLKRMYAEMSMQNDLLKEALGKKR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
855 bp284 aa3081162+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

SAEGSPWKKALRPSLRREMAMNAVARHGVSIASACRAFEISETCYRYSPVMSDENEEIADWLERLTANKRNWGFGLCFLYLRNVQGYGWNHKRVYRIYCE
LELNLRIKPKKRLKRDKPEPLSVPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYIS
GKLMEWAEKRNVRLEYIQPGKPQQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1088 bp362 aa751162+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNGRYSDAQIMAVLKQAEGGVPVSELCREHGMSSASFYKWRAKFGGMDASLMSEMKDMAEENRRLKRMYAEMSMQNDLLKEALGKKALRPSLRREMAMN
AVARHGVSIASACRAFEISETCYRYSPVMSDENEEIADWLERLTANKRNWGFGLCFLYLRNVQGYGWNHKRVYRIYCELELNLRIKPKKRLKRDKPEPLS
VPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYISGKLMEWAEKRNVRLEYIQPGKP
QQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA

 

Blast result :
Comments
Genome in progress.
ISSusp2 is 87 % (ORFA) aa similar to ISXcd1 and 81% (ORFB) aa similar to ISXac2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct submission GenBank.