ISSusp2
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AALV01000013 | ND | Sulfitobacter sp. | Sulfitobacter sp. EE-36 |
DNA section
IS Length : 1196 bp
Ends
IR Length : 33/48
IRL : GTAATCCCCCCCAAAATTAGCGGTGTTCAAAAGTAGAATTTTCTCGGCAA
IRR : GTAATCCCCCCATTTTTAATGGGGTCCAGCCGTAGAATTCAGGCGGCTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCGGCAGTCA | TGGGAAACGCGCAG | 0 |
DNA sequence
TGGGGTAATCCCCCCCAAAATTAGCGGTGTTCAAAAGTAGAATTTTCTCGGCAAGATATCTGAGGAGATTTACGATGAAGAACGGACGATACAGCGACGC
GCAAATCATGGCAGTGTTGAAGCAGGCGGAGGGCGGTGTGCCGGTCTCTGAGCTGTGCCGTGAGCATGGCATGAGCAGCGCCAGTTTCTATAAGTGGCGC
GCTAAGTTTGGCGGCATGGACGCGTCCTTGATGTCCGAGATGAAGGATATGGCGGAAGAGAACCGTCGTCTGAAGCGCATGTATGCCGAGATGAGCATGC
AAAATGATCTGCTGAAGGAAGCCCTTGGAAAAAAGCGTTAAGGCCGTCTCTGCGACGAGAGATGGCCATGAATGCGGTCGCACGACACGGCGTAAGCATC
GCGTCGGCGTGCCGGGCGTTCGAGATCAGCGAGACCTGCTACAGATACAGCCCTGTAATGAGCGACGAGAATGAAGAGATCGCCGATTGGCTGGAACGTC
TGACAGCAAACAAGCGCAACTGGGGCTTCGGCCTGTGCTTTCTGTATCTGCGCAACGTCCAGGGTTACGGCTGGAACCACAAGCGGGTCTATCGGATCTA
CTGCGAGCTGGAGCTAAACCTGCGTATCAAGCCCAAGAAACGCTTGAAGCGGGACAAGCCGGAACCCCTGTCTGTGCCTGATAAGCCCAATGAGACATGG
TCGATGGATTTCATGGCGGATCAGCTGGCAGATGGGCGCTCGATCAGGACATTGAACGTGCTGGATGACTTCAATCGTGAGGGCCTATGCATCGAAGTGG
ACTTCTCGCTGCCCGCAGAGAGAGTGGTCAGAAGCTTAAACCAGATCATCGAATGGCGCGGTCAACCGCAGACAATTCGCGTCGATAATGGCCCAGAATA
TATTAGTGGTAAGCTGATGGAATGGGCCGAAAAACGCAATGTTCGACTGGAATACATCCAGCCAGGCAAGCCACAACAAAATGCCTACATTGAACGCTAC
AACCGCACCGTTCGCGGCGAATGGCTTGGGCAATACATCTTCGAAACCATCGAGGAGGCACAAGACCAAGCAACTGAATGGCTCTGGACTTACAACAACG
AGCGACCCAACATGGGTATCGGCGGCATGACACCCGCCATGAAACTGAAAACAGCCGCCTGAATTCTACGGCTGGACCCCATTAAAAATGGGGGGATTAC
CA
GCAAATCATGGCAGTGTTGAAGCAGGCGGAGGGCGGTGTGCCGGTCTCTGAGCTGTGCCGTGAGCATGGCATGAGCAGCGCCAGTTTCTATAAGTGGCGC
GCTAAGTTTGGCGGCATGGACGCGTCCTTGATGTCCGAGATGAAGGATATGGCGGAAGAGAACCGTCGTCTGAAGCGCATGTATGCCGAGATGAGCATGC
AAAATGATCTGCTGAAGGAAGCCCTTGGAAAAAAGCGTTAAGGCCGTCTCTGCGACGAGAGATGGCCATGAATGCGGTCGCACGACACGGCGTAAGCATC
GCGTCGGCGTGCCGGGCGTTCGAGATCAGCGAGACCTGCTACAGATACAGCCCTGTAATGAGCGACGAGAATGAAGAGATCGCCGATTGGCTGGAACGTC
TGACAGCAAACAAGCGCAACTGGGGCTTCGGCCTGTGCTTTCTGTATCTGCGCAACGTCCAGGGTTACGGCTGGAACCACAAGCGGGTCTATCGGATCTA
CTGCGAGCTGGAGCTAAACCTGCGTATCAAGCCCAAGAAACGCTTGAAGCGGGACAAGCCGGAACCCCTGTCTGTGCCTGATAAGCCCAATGAGACATGG
TCGATGGATTTCATGGCGGATCAGCTGGCAGATGGGCGCTCGATCAGGACATTGAACGTGCTGGATGACTTCAATCGTGAGGGCCTATGCATCGAAGTGG
ACTTCTCGCTGCCCGCAGAGAGAGTGGTCAGAAGCTTAAACCAGATCATCGAATGGCGCGGTCAACCGCAGACAATTCGCGTCGATAATGGCCCAGAATA
TATTAGTGGTAAGCTGATGGAATGGGCCGAAAAACGCAATGTTCGACTGGAATACATCCAGCCAGGCAAGCCACAACAAAATGCCTACATTGAACGCTAC
AACCGCACCGTTCGCGGCGAATGGCTTGGGCAATACATCTTCGAAACCATCGAGGAGGCACAAGACCAAGCAACTGAATGGCTCTGGACTTACAACAACG
AGCGACCCAACATGGGTATCGGCGGCATGACACCCGCCATGAAACTGAAAACAGCCGCCTGAATTCTACGGCTGGACCCCATTAAAAATGGGGGGATTAC
CA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 75 | 341 | + | No |
Description : First part of the transposase
ORF sequence :
MKNGRYSDAQIMAVLKQAEGGVPVSELCREHGMSSASFYKWRAKFGGMDASLMSEMKDMAEENRRLKRMYAEMSMQNDLLKEALGKKR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
855 bp | 284 aa | 308 | 1162 | + | No |
Description : Second part of the transposase
ORF sequence :
SAEGSPWKKALRPSLRREMAMNAVARHGVSIASACRAFEISETCYRYSPVMSDENEEIADWLERLTANKRNWGFGLCFLYLRNVQGYGWNHKRVYRIYCE
LELNLRIKPKKRLKRDKPEPLSVPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYIS
GKLMEWAEKRNVRLEYIQPGKPQQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA
LELNLRIKPKKRLKRDKPEPLSVPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYIS
GKLMEWAEKRNVRLEYIQPGKPQQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1088 bp | 362 aa | 75 | 1162 | + | Yes |
Chemistry : DDE
ORF sequence :
MKNGRYSDAQIMAVLKQAEGGVPVSELCREHGMSSASFYKWRAKFGGMDASLMSEMKDMAEENRRLKRMYAEMSMQNDLLKEALGKKALRPSLRREMAMN
AVARHGVSIASACRAFEISETCYRYSPVMSDENEEIADWLERLTANKRNWGFGLCFLYLRNVQGYGWNHKRVYRIYCELELNLRIKPKKRLKRDKPEPLS
VPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYISGKLMEWAEKRNVRLEYIQPGKP
QQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA
AVARHGVSIASACRAFEISETCYRYSPVMSDENEEIADWLERLTANKRNWGFGLCFLYLRNVQGYGWNHKRVYRIYCELELNLRIKPKKRLKRDKPEPLS
VPDKPNETWSMDFMADQLADGRSIRTLNVLDDFNREGLCIEVDFSLPAERVVRSLNQIIEWRGQPQTIRVDNGPEYISGKLMEWAEKRNVRLEYIQPGKP
QQNAYIERYNRTVRGEWLGQYIFETIEEAQDQATEWLWTYNNERPNMGIGGMTPAMKLKTAA
Blast result :
Comments
Genome in progress.
ISSusp2 is 87 % (ORFA) aa similar to ISXcd1 and 81% (ORFB) aa similar to ISXac2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISSusp2 is 87 % (ORFA) aa similar to ISXcd1 and 81% (ORFB) aa similar to ISXac2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct submission GenBank.