ISBth4
- Family IS4
- Group IS231
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ126269 | Y | Bacillus thuringiensis | Bacillus thuringiensis MEX312 |
DNA section
IS Length : 2046 bp
Ends
IR Length : 17
IRL : CATCGCTATCAAGCTAAAGAAGTAGGTCACCCCCAAAAAGAGAAAATATG
IRR : CATCGCTATCAAGTTAAGCTTATGCAAAGTCAATTTTAGGCGAGATTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TGGCGGTACCC | NNNNNNNNNN | 11 |
DNA sequence
CATCGCTATCAAGCTAAAGAAGTAGGTCACCCCCAAAAAGAGAAAATATGTTAAATTCTCATAGATAACTATCTTATATTAATTACATAATCCAGTGTGA
TATAATAATATAAAGATATTATATTTAAAAGGGGGATTCAAATTGGTTAAAAACTTACCTTTACTAATAGTGATTTTACTACTAGGTATCAGTTCTTCTA
CATTAAGCACGAACGGATACTTTTCTCCAGTTATAGAATGGTCTTTAATGATTATAAGTATTATTTTGAACATTACTGCAGTGATAGGTTTATCATTACA
CGTCCTTGTATATCAACCTATGAAAAGATTTAATAAAAATTTAAAAGGGACCTTCAAATAAAATAATTATATTTGAGGTAACACCACATCGCTATCGAGC
TAAAAAAATGTATCCATAAAGAGAAAAAAACGCTATTCTTTCTGTAGAATCATAGGAAAGGATGGCGTTTTTTATGTCTGTTTCTGATGAATTACAACTA
TTTGCTCAAGAGATTCAACGTTTTTTATCTCCAAATACCTTACGGAATCTTGCTCGAGATGTTGGTTTCGTACAACGAACCAGTAAGTACCAAGCAAAAG
ATTTAGTCGCTTTATGTGTATGGATGAACCAAAATATCGCTACGACGTCTTTAACTCAGTTATCTAGCTGTTTAGAAGCCTCGACAGAAGTGCTCATCAG
TCCCGAGGGACTGAACCAACGATTTAATAAAGCAGCCGTCCAATTTCTACAACACATACTAGCTGAACTACTAAGCCGAAAATTGACCTCATCTATACCG
ATTTCTTCTCCATATACTTCTGTTTTTAAGCGTATTCGTATTTTAGATTCAACTGCATTTCAACTCCCTGATGTATTTTCATCGGTTTATCCAGGTGCAG
GAGGATGTAGCCATACAGCTGGGATAAAAATTCAACTTGAGTATGATTTGTTAAGTGGACAGTTCCTTCATATTCATACAGGTCCAGGTAAACAACATGA
TCGCACTTACGGCTCTTTGTGTGCCCCAACTGTGACAGCAAATGATTTATGTATCCGAGATTTAGGTTATTTTCATTTAAAAGACCTTCAATATATACAA
GATAAAGAGGCCTACTATATCTCTCGTATCAAGTCGAACACACGTATGTATCAAAAAAATCCTAACCCTGATTATTTTCAAGATGGAAGAATTAAGAAAG
GTACAGAGTATATACAGATAGATATAGAGACGTTAATGAACTCCCTTCAACCAGGACAAACGTGTGAAGTAGCTGATGCTTATGTAGGAATGAATGATAA
AGTGCCAGCTCGTGTAATTGTTCATCGATTAACAAAACAACAGCAACAAAAACGATTACAAGATCAAGCTGTAAGAGAAAAAAAGAAAGGAATGAAGTAT
TCTCCTCGTAGTAAACGACTCAGCGGTATCAATGTATATATGACAAACACCCCTACAGATATTGTCCCTATGGGACAGGTACATGACTGGTATTCTTTGC
GTTGGCAAATCGAAATTTTATTTAAAACGTGGAAGTCATTCTTTCAAATTCATCATTGTAAAAAGATAAAAGCAGAACGATTAGAGTGCCATTTATATGG
TCAATTGATTGCCATTCTACTCTGTTCTTCTATCATGTTTCAAATGCGCCAATTGCTCCTCATGAAGAAAAAACGAGAGCTTAGTGAGTATAAAGCCATA
TATATGATTAAAGACTATTTTCTTCTTCTATTCCAAACTATACAGAAAAACACCCAAGAGCTATCAAAGGTGTTACTTCGTCTGTTCAATCTTCTACAGC
AAAACGGGCGGAAATCTCATCGATATGAGAAAAAAACGGTCTTTGATATATTAGGTGTCGTTTACAATTCTATGTCTGATAATCAAGCCGCTTAATTCAA
AAAAGTGAAACCCGGTAGGGTTTATTTCGTATGCAAATCTTTCAATCACCTATACTTGCTCCTTAGAAAAAAGAAACAATCTCGCCTAAAATTGACTTTG
CATAAGCTTAACTTGATAGCGATG
TATAATAATATAAAGATATTATATTTAAAAGGGGGATTCAAATTGGTTAAAAACTTACCTTTACTAATAGTGATTTTACTACTAGGTATCAGTTCTTCTA
CATTAAGCACGAACGGATACTTTTCTCCAGTTATAGAATGGTCTTTAATGATTATAAGTATTATTTTGAACATTACTGCAGTGATAGGTTTATCATTACA
CGTCCTTGTATATCAACCTATGAAAAGATTTAATAAAAATTTAAAAGGGACCTTCAAATAAAATAATTATATTTGAGGTAACACCACATCGCTATCGAGC
TAAAAAAATGTATCCATAAAGAGAAAAAAACGCTATTCTTTCTGTAGAATCATAGGAAAGGATGGCGTTTTTTATGTCTGTTTCTGATGAATTACAACTA
TTTGCTCAAGAGATTCAACGTTTTTTATCTCCAAATACCTTACGGAATCTTGCTCGAGATGTTGGTTTCGTACAACGAACCAGTAAGTACCAAGCAAAAG
ATTTAGTCGCTTTATGTGTATGGATGAACCAAAATATCGCTACGACGTCTTTAACTCAGTTATCTAGCTGTTTAGAAGCCTCGACAGAAGTGCTCATCAG
TCCCGAGGGACTGAACCAACGATTTAATAAAGCAGCCGTCCAATTTCTACAACACATACTAGCTGAACTACTAAGCCGAAAATTGACCTCATCTATACCG
ATTTCTTCTCCATATACTTCTGTTTTTAAGCGTATTCGTATTTTAGATTCAACTGCATTTCAACTCCCTGATGTATTTTCATCGGTTTATCCAGGTGCAG
GAGGATGTAGCCATACAGCTGGGATAAAAATTCAACTTGAGTATGATTTGTTAAGTGGACAGTTCCTTCATATTCATACAGGTCCAGGTAAACAACATGA
TCGCACTTACGGCTCTTTGTGTGCCCCAACTGTGACAGCAAATGATTTATGTATCCGAGATTTAGGTTATTTTCATTTAAAAGACCTTCAATATATACAA
GATAAAGAGGCCTACTATATCTCTCGTATCAAGTCGAACACACGTATGTATCAAAAAAATCCTAACCCTGATTATTTTCAAGATGGAAGAATTAAGAAAG
GTACAGAGTATATACAGATAGATATAGAGACGTTAATGAACTCCCTTCAACCAGGACAAACGTGTGAAGTAGCTGATGCTTATGTAGGAATGAATGATAA
AGTGCCAGCTCGTGTAATTGTTCATCGATTAACAAAACAACAGCAACAAAAACGATTACAAGATCAAGCTGTAAGAGAAAAAAAGAAAGGAATGAAGTAT
TCTCCTCGTAGTAAACGACTCAGCGGTATCAATGTATATATGACAAACACCCCTACAGATATTGTCCCTATGGGACAGGTACATGACTGGTATTCTTTGC
GTTGGCAAATCGAAATTTTATTTAAAACGTGGAAGTCATTCTTTCAAATTCATCATTGTAAAAAGATAAAAGCAGAACGATTAGAGTGCCATTTATATGG
TCAATTGATTGCCATTCTACTCTGTTCTTCTATCATGTTTCAAATGCGCCAATTGCTCCTCATGAAGAAAAAACGAGAGCTTAGTGAGTATAAAGCCATA
TATATGATTAAAGACTATTTTCTTCTTCTATTCCAAACTATACAGAAAAACACCCAAGAGCTATCAAAGGTGTTACTTCGTCTGTTCAATCTTCTACAGC
AAAACGGGCGGAAATCTCATCGATATGAGAAAAAAACGGTCTTTGATATATTAGGTGTCGTTTACAATTCTATGTCTGATAATCAAGCCGCTTAATTCAA
AAAAGTGAAACCCGGTAGGGTTTATTTCGTATGCAAATCTTTCAATCACCTATACTTGCTCCTTAGAAAAAAGAAACAATCTCGCCTAAAATTGACTTTG
CATAAGCTTAACTTGATAGCGATG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
219 bp | 72 aa | 143 | 361 | + | No |
Annotation : Description :
ORF sequence :
MVKNLPLLIVILLLGISSSTLSTNGYFSPVIEWSLMIISIILNITAVIGLSLHVLVYQPMKRFNKNLKGTFK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1412 bp | 473 aa | 484 | 1895 | + | No |
Chemistry : DDE
ORF sequence :
MSVSDELQLFAQEIQRFLSPNTLRNLARDVGFVQRTSKYQAKDLVALCVWMNQNIATTSLTQLSSCLEASTEVLISPEGLNQRFNKAAVQFLQHILAELL
SRKLTSSIPISSPYTSVFKRIRILDSTAFQLPDVFSSVYPGAGGCSHTAGIKIQLEYDLLSGQFLHIHTGPGKQHDRTYGSLCAPTVTANDLCIRDLGYF
HLKDLQYIQDKEAYYISRIKSNTRMYQKNPNPDYFQDGRIKKGTEYIQIDIETLMNSLQPGQTCEVADAYVGMNDKVPARVIVHRLTKQQQQKRLQDQAV
REKKKGMKYSPRSKRLSGINVYMTNTPTDIVPMGQVHDWYSLRWQIEILFKTWKSFFQIHHCKKIKAERLECHLYGQLIAILLCSSIMFQMRQLLLMKKK
RELSEYKAIYMIKDYFLLLFQTIQKNTQELSKVLLRLFNLLQQNGRKSHRYEKKTVFDILGVVYNSMSDNQAA
SRKLTSSIPISSPYTSVFKRIRILDSTAFQLPDVFSSVYPGAGGCSHTAGIKIQLEYDLLSGQFLHIHTGPGKQHDRTYGSLCAPTVTANDLCIRDLGYF
HLKDLQYIQDKEAYYISRIKSNTRMYQKNPNPDYFQDGRIKKGTEYIQIDIETLMNSLQPGQTCEVADAYVGMNDKVPARVIVHRLTKQQQQKRLQDQAV
REKKKGMKYSPRSKRLSGINVYMTNTPTDIVPMGQVHDWYSLRWQIEILFKTWKSFFQIHHCKKIKAERLECHLYGQLIAILLCSSIMFQMRQLLLMKKK
RELSEYKAIYMIKDYFLLLFQTIQKNTQELSKVLLRLFNLLQQNGRKSHRYEKKTVFDILGVVYNSMSDNQAA
Blast result :
Comments
The ORF B is the transposase, ISBth4 is 98% aa similar to ISBce7.ORF A is a passenger gene.
References
1] Wang, J.H., Steggles, J.R. and Ellar, D.J. (2006) Molecular characterization of virulence defects in Bacillus thuringiensis mutants (unpublished)