ISGbe1
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008343 | ND | Granulibacter bethesdensis | Granulibacter bethesdensis CGDNIH1 |
DNA section
IS Length : 1269 bp
Ends
IR Length : 20/25
IRL : TGAGCTGCCCCCTTCTGAGTGGTCCATCGACTATGACAGTCTGGATCAAG
IRR : TGAGCAGCCCCCATCGGGTGGTCCGGGTTATTAGTTAGTGCATTGTCGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGCTGCGCG | CTTGTCGTAA | 0 |
DNA sequence
TGAGCTGCCCCCTTCTGAGTGGTCCATCGACTATGACAGTCTGGATCAAGGAAGGGACGATGCATGCCTGCCAAGAAGCACAAGCCTGAGGAGATCATCG
GGAAGCTGCGTGAGGTCGAGATCATGCTGGGCCAGGGCGGGACGACCGCTGAGGCATGCCGGCGGATCGCGGTCAGCGAGCAGACCTACTACCGCTGGCG
CAAGGAGTACGGCGGCTTGAAGACGGATCAGGCGCGTCGGATGAAAGATCTGGAGAAGGAGAACCTGCGGCTGCGGCGTGCGATCTCCGACCTGACACTG
GACAAGTTGATTTTACAGGAGGCGGCGCGGGGAAACTTCTGAGCCCCGCGCGACGCCGACGCTGCATCGACCAGGTGCGAGAGGTGCTGGACATATCCGA
GCGGCGGGTGTGCCGCGTGCTGGGGCAGCACCGGTCGACACAGCGCAAGGTGCCGTGCGGGGCAGATGACGAAGAGGTGCTGACCGACGACATCGTCGCG
CTGGCCAAGCAGTACGGGCGCTACGGCTACCGCCGGGTCACCGCACTGCTGCATGCGGCGGGCTGGTCGGTGAACCATAAACGGGTGGAGCGGATCTGGC
GGCGTGAAGGCCTCAAGGTGCCGCAGAAGCAACCTAAACGTGGCCGGCTATGGTTGAACGACGGCTCATGCATCCGGCTGCGACCGGAGTATCCGGGGCA
TGTGTGGGCGTACGACTTCGTCGAAGCGCGGACGCATGACGGGCGCAAGTTCCGGATACTGACCATCATCGATGAGGCCAGCAGGGAATGCCTGGCACTG
GTCGTCGCGCGCCAGCTTCGACACGAAGACGTGCTGGCAGCGCTTGCCGACCTGTTCATCGCGAGGGGTCCGCCCGCGCATATCAGATCGGATAACGGCA
GCGAGTTCATCGCTACCGCGGTTCAGAAATGGCTTGGGCAGGTTGGCGTGAAGACGCTGTACATCGCGCCGGGTTCGCCGTGGGAGAATGGCTACAACGA
GAGCTTCAACGGCTCGCTGCGCGATGAGCTGCTCAACGGCGAGATTTTCTACAGCCTCGCTGAAGCAAGAGTACTGATCGAGGCGTGGCGCCGTCACTAC
AACACCGTCCGGCCGCACAGCAGCCTGGGCTACCGGCCGCCCGCACCACAAGCGGCGACACCGCCATTGCCGGCCTCCGGTTCCGCTTCGCTCCACCTAC
GACCGGCAATGGCGGCGGAGACGACAATGCACTAACTAATAACCCGGACCACCCGATGGGGGCTGCTCA
GGAAGCTGCGTGAGGTCGAGATCATGCTGGGCCAGGGCGGGACGACCGCTGAGGCATGCCGGCGGATCGCGGTCAGCGAGCAGACCTACTACCGCTGGCG
CAAGGAGTACGGCGGCTTGAAGACGGATCAGGCGCGTCGGATGAAAGATCTGGAGAAGGAGAACCTGCGGCTGCGGCGTGCGATCTCCGACCTGACACTG
GACAAGTTGATTTTACAGGAGGCGGCGCGGGGAAACTTCTGAGCCCCGCGCGACGCCGACGCTGCATCGACCAGGTGCGAGAGGTGCTGGACATATCCGA
GCGGCGGGTGTGCCGCGTGCTGGGGCAGCACCGGTCGACACAGCGCAAGGTGCCGTGCGGGGCAGATGACGAAGAGGTGCTGACCGACGACATCGTCGCG
CTGGCCAAGCAGTACGGGCGCTACGGCTACCGCCGGGTCACCGCACTGCTGCATGCGGCGGGCTGGTCGGTGAACCATAAACGGGTGGAGCGGATCTGGC
GGCGTGAAGGCCTCAAGGTGCCGCAGAAGCAACCTAAACGTGGCCGGCTATGGTTGAACGACGGCTCATGCATCCGGCTGCGACCGGAGTATCCGGGGCA
TGTGTGGGCGTACGACTTCGTCGAAGCGCGGACGCATGACGGGCGCAAGTTCCGGATACTGACCATCATCGATGAGGCCAGCAGGGAATGCCTGGCACTG
GTCGTCGCGCGCCAGCTTCGACACGAAGACGTGCTGGCAGCGCTTGCCGACCTGTTCATCGCGAGGGGTCCGCCCGCGCATATCAGATCGGATAACGGCA
GCGAGTTCATCGCTACCGCGGTTCAGAAATGGCTTGGGCAGGTTGGCGTGAAGACGCTGTACATCGCGCCGGGTTCGCCGTGGGAGAATGGCTACAACGA
GAGCTTCAACGGCTCGCTGCGCGATGAGCTGCTCAACGGCGAGATTTTCTACAGCCTCGCTGAAGCAAGAGTACTGATCGAGGCGTGGCGCCGTCACTAC
AACACCGTCCGGCCGCACAGCAGCCTGGGCTACCGGCCGCCCGCACCACAAGCGGCGACACCGCCATTGCCGGCCTCCGGTTCCGCTTCGCTCCACCTAC
GACCGGCAATGGCGGCGGAGACGACAATGCACTAACTAATAACCCGGACCACCCGATGGGGGCTGCTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
279 bp | 92 aa | 64 | 342 | + | No |
Description : First part of the transposase
ORF sequence :
MPAKKHKPEEIIGKLREVEIMLGQGGTTAEACRRIAVSEQTYYRWRKEYGGLKTDQARRMKDLEKENLRLRRAISDLTLDKLILQEAARGNF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1083 bp | 360 aa | 153 | 1235 | + | No |
Description : Second part of the transposase
ORF sequence :
GMPADRGQRADLLPLAQGVRRLEDGSGASDERSGEGEPAAAACDLRPDTGQVDFTGGGAGKLLSPARRRRCIDQVREVLDISERRVCRVLGQHRSTQRKV
PCGADDEEVLTDDIVALAKQYGRYGYRRVTALLHAAGWSVNHKRVERIWRREGLKVPQKQPKRGRLWLNDGSCIRLRPEYPGHVWAYDFVEARTHDGRKF
RILTIIDEASRECLALVVARQLRHEDVLAALADLFIARGPPAHIRSDNGSEFIATAVQKWLGQVGVKTLYIAPGSPWENGYNESFNGSLRDELLNGEIFY
SLAEARVLIEAWRRHYNTVRPHSSLGYRPPAPQAATPPLPASGSASLHLRPAMAAETTMH
PCGADDEEVLTDDIVALAKQYGRYGYRRVTALLHAAGWSVNHKRVERIWRREGLKVPQKQPKRGRLWLNDGSCIRLRPEYPGHVWAYDFVEARTHDGRKF
RILTIIDEASRECLALVVARQLRHEDVLAALADLFIARGPPAHIRSDNGSEFIATAVQKWLGQVGVKTLYIAPGSPWENGYNESFNGSLRDELLNGEIFY
SLAEARVLIEAWRRHYNTVRPHSSLGYRPPAPQAATPPLPASGSASLHLRPAMAAETTMH
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1172 bp | 390 aa | 64 | 1235 | + | Yes |
Chemistry : DDE
ORF sequence :
MPAKKHKPEEIIGKLREVEIMLGQGGTTAEACRRIAVSEQTYYRWRKEYGGLKTDQARRMKDLEKENLRLRRAISDLTLDKLILQEAARGKLLSPARRRR
CIDQVREVLDISERRVCRVLGQHRSTQRKVPCGADDEEVLTDDIVALAKQYGRYGYRRVTALLHAAGWSVNHKRVERIWRREGLKVPQKQPKRGRLWLND
GSCIRLRPEYPGHVWAYDFVEARTHDGRKFRILTIIDEASRECLALVVARQLRHEDVLAALADLFIARGPPAHIRSDNGSEFIATAVQKWLGQVGVKTLY
IAPGSPWENGYNESFNGSLRDELLNGEIFYSLAEARVLIEAWRRHYNTVRPHSSLGYRPPAPQAATPPLPASGSASLHLRPAMAAETTMH
CIDQVREVLDISERRVCRVLGQHRSTQRKVPCGADDEEVLTDDIVALAKQYGRYGYRRVTALLHAAGWSVNHKRVERIWRREGLKVPQKQPKRGRLWLND
GSCIRLRPEYPGHVWAYDFVEARTHDGRKFRILTIIDEASRECLALVVARQLRHEDVLAALADLFIARGPPAHIRSDNGSEFIATAVQKWLGQVGVKTLY
IAPGSPWENGYNESFNGSLRDELLNGEIFYSLAEARVLIEAWRRHYNTVRPHSSLGYRPPAPQAATPPLPASGSASLHLRPAMAAETTMH
Blast result :
Comments
ISGbe1 is 96% (ORFA) and 91% (ORFB) aa similar to ISSpma1 . The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Greenberg,D.E., Porcella,S.F., Zelazny,A.M., Stock,F., Dorward,D.W., Murray,P.R. and Holland,S.M.(2006) Direct submission GenBank.