ISDsp1
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009455 | ND | Dehalococcoides sp. | Dehalococcoides sp. BAV1 |
DNA section
IS Length : 1210 bp
Ends
IR Length : 23/30
IRL : TGACCTGCCCCCCGAAAACGAGCCCAGTTTCATGTTAGACTGGAAAATAA
IRR : TGACCTGCCCCCGATAGTGATACCACTTTTTAAGTAGTTACCACTGCCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAATTACC | ACCC | GTTTATTTAG | 4 |
DNA sequence
TGACCTGCCCCCCGAAAACGAGCCCAGTTTCATGTTAGACTGGAAAATAAGAAAAGGGGAAATCAGATGCCCAGGAAATCTTTTACACCGGAACAGATCA
TCAATAAGCTTCGCGAGGCTGAGATACTCATCAGCCAGGGAACTACACTTGCAGTCATGCTAAAGAAGATTGAAGTCAGTGACTGTACCTACTACCGCTG
GCGCCAAGAATACGGTGGTATGCGTATTGAGCAGGCAAAACGCCTCAAAGAACTCGAAGTGGAAAACACCCGCCTTAAGAAACTTGTAGCCGATCTCTCA
TTGGATAAAGCTATTTTGAAAGAGGCCGCACGGGGAAACTCCTAAGCCCGCACAAGAGACAGCAGATAATTGAGAGAATTCAGAGTAACCTCAAGGTCTC
CCAGAGGCGGGCATGCCAAGTACTATATCAATCCAGAGCTACTCAACGCCGCAGCCGGGAAATACCAGGTGAGGAGAAACGGCTGGTGGCTGATATCATT
GAACTGGCTAGTAAGTACGGCAGGTATGGTTATCGGCGAATCACAGCGTTACTCAATGAAAGAGGCTGGAGAGTGAACCATAAAAGAGTAGAGAGAATTT
GGCGTACCGAGGGACTCAGGGTGCCCAAGAAGCAGCCCAAGCGGAGTCGGCTATGGCTCAATGACGGTTCGTGCATCAGACTAAGACCGGAGCGTAAGAA
TCATGTCTGGAGTTATGATTTTGTCACTGCCAGAACCGCTGACGGCCGGGCTTTCCGGATGCTTAATATCATCGATGAATATACTCGTGAGTGTCTAGCC
ATAACGATCAACCGGCGATTGACTTCAGAAGACGTCATAGACCAACTCTTTAATCTATTCATTTTTAGGGGTATCCCGGAACATATAAGGTCAGACAACG
GACCCGAATTTACCGCCAAAGCAATACGCAAGTGGTTGACCCGACTTGGCATCAAGACTCTTTTCATCGAACCCGGCTCTCCTTGGGAGAATGGCTACAT
TGAATCATTCAACGGCAAACTGCGAGATGAATTATTGAACTTGGAGATCTTTACTACGCTTGCTGAAGCTCGGGTATTGATTACTGACTGGAGGAGGCAG
TACAATCAAGTCCGGCCTCACAGCTCTCTTGGTTATCGTCCTCCAGCACCGGAGGCAATAATGGCAGTGGTAACTACTTAAAAAGTGGTATCACTATCGG
GGGCAGGTCA
TCAATAAGCTTCGCGAGGCTGAGATACTCATCAGCCAGGGAACTACACTTGCAGTCATGCTAAAGAAGATTGAAGTCAGTGACTGTACCTACTACCGCTG
GCGCCAAGAATACGGTGGTATGCGTATTGAGCAGGCAAAACGCCTCAAAGAACTCGAAGTGGAAAACACCCGCCTTAAGAAACTTGTAGCCGATCTCTCA
TTGGATAAAGCTATTTTGAAAGAGGCCGCACGGGGAAACTCCTAAGCCCGCACAAGAGACAGCAGATAATTGAGAGAATTCAGAGTAACCTCAAGGTCTC
CCAGAGGCGGGCATGCCAAGTACTATATCAATCCAGAGCTACTCAACGCCGCAGCCGGGAAATACCAGGTGAGGAGAAACGGCTGGTGGCTGATATCATT
GAACTGGCTAGTAAGTACGGCAGGTATGGTTATCGGCGAATCACAGCGTTACTCAATGAAAGAGGCTGGAGAGTGAACCATAAAAGAGTAGAGAGAATTT
GGCGTACCGAGGGACTCAGGGTGCCCAAGAAGCAGCCCAAGCGGAGTCGGCTATGGCTCAATGACGGTTCGTGCATCAGACTAAGACCGGAGCGTAAGAA
TCATGTCTGGAGTTATGATTTTGTCACTGCCAGAACCGCTGACGGCCGGGCTTTCCGGATGCTTAATATCATCGATGAATATACTCGTGAGTGTCTAGCC
ATAACGATCAACCGGCGATTGACTTCAGAAGACGTCATAGACCAACTCTTTAATCTATTCATTTTTAGGGGTATCCCGGAACATATAAGGTCAGACAACG
GACCCGAATTTACCGCCAAAGCAATACGCAAGTGGTTGACCCGACTTGGCATCAAGACTCTTTTCATCGAACCCGGCTCTCCTTGGGAGAATGGCTACAT
TGAATCATTCAACGGCAAACTGCGAGATGAATTATTGAACTTGGAGATCTTTACTACGCTTGCTGAAGCTCGGGTATTGATTACTGACTGGAGGAGGCAG
TACAATCAAGTCCGGCCTCACAGCTCTCTTGGTTATCGTCCTCCAGCACCGGAGGCAATAATGGCAGTGGTAACTACTTAAAAAGTGGTATCACTATCGG
GGGCAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
279 bp | 92 aa | 67 | 345 | + | No |
Description : First part of the transposase
ORF sequence :
MPRKSFTPEQIINKLREAEILISQGTTLAVMLKKIEVSDCTYYRWRQEYGGMRIEQAKRLKELEVENTRLKKLVADLSLDKAILKEAARGNS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
873 bp | 290 aa | 309 | 1181 | + | No |
Description : Second part of the transposase
ORF sequence :
SYFERGRTGKLLSPHKRQQIIERIQSNLKVSQRRACQVLYQSRATQRRSREIPGEEKRLVADIIELASKYGRYGYRRITALLNERGWRVNHKRVERIWRT
EGLRVPKKQPKRSRLWLNDGSCIRLRPERKNHVWSYDFVTARTADGRAFRMLNIIDEYTRECLAITINRRLTSEDVIDQLFNLFIFRGIPEHIRSDNGPE
FTAKAIRKWLTRLGIKTLFIEPGSPWENGYIESFNGKLRDELLNLEIFTTLAEARVLITDWRRQYNQVRPHSSLGYRPPAPEAIMAVVTT
EGLRVPKKQPKRSRLWLNDGSCIRLRPERKNHVWSYDFVTARTADGRAFRMLNIIDEYTRECLAITINRRLTSEDVIDQLFNLFIFRGIPEHIRSDNGPE
FTAKAIRKWLTRLGIKTLFIEPGSPWENGYIESFNGKLRDELLNLEIFTTLAEARVLITDWRRQYNQVRPHSSLGYRPPAPEAIMAVVTT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1115 bp | 371 aa | 67 | 1181 | + | Yes |
Chemistry : DDE
ORF sequence :
MPRKSFTPEQIINKLREAEILISQGTTLAVMLKKIEVSDCTYYRWRQEYGGMRIEQAKRLKELEVENTRLKKLVADLSLDKAILKEAARGKLLSPHKRQQ
IIERIQSNLKVSQRRACQVLYQSRATQRRSREIPGEEKRLVADIIELASKYGRYGYRRITALLNERGWRVNHKRVERIWRTEGLRVPKKQPKRSRLWLND
GSCIRLRPERKNHVWSYDFVTARTADGRAFRMLNIIDEYTRECLAITINRRLTSEDVIDQLFNLFIFRGIPEHIRSDNGPEFTAKAIRKWLTRLGIKTLF
IEPGSPWENGYIESFNGKLRDELLNLEIFTTLAEARVLITDWRRQYNQVRPHSSLGYRPPAPEAIMAVVTT
IIERIQSNLKVSQRRACQVLYQSRATQRRSREIPGEEKRLVADIIELASKYGRYGYRRITALLNERGWRVNHKRVERIWRTEGLRVPKKQPKRSRLWLND
GSCIRLRPERKNHVWSYDFVTARTADGRAFRMLNIIDEYTRECLAITINRRLTSEDVIDQLFNLFIFRGIPEHIRSDNGPEFTAKAIRKWLTRLGIKTLF
IEPGSPWENGYIESFNGKLRDELLNLEIFTTLAEARVLITDWRRQYNQVRPHSSLGYRPPAPEAIMAVVTT
Blast result :
Comments
ISDsp1 is 73 % (ORFA) aa similar to ISMyma1 and 62% (ORFB) aa similar to ISBcen23. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.