ISSisp1
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008043 | ND | Silicibacter sp. | Silicibacter sp. TM1040 |
DNA section
IS Length : 1236 bp
Ends
IR Length : 27/39
IRL : TGATGTGATCCCCGAAAACGCCCCCGTTTTTGATTAGAGTTTTCCGCAGA
IRR : TGATGTGCTACCCAACGTGCCCTCGGCCGTTGTTAGAATTTCCGCGGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGCTTTTGT | CGATGCCAGC | 0 |
DNA sequence
TGATGTGATCCCCGAAAACGCCCCCGTTTTTGATTAGAGTTTTCCGCAGAGAAACCCTGGCTGGGAGAGGAGCGGAAACGCATGAAGGCATCGAAGTTCA
CGGACGCGCAGAAGGCGTTCATCATCAAGCAGGCGGAGGACGGCACCTCGGTGGCCGAGGTCTGCCGCAAGGCCGGGATCAGCACGGCGACATTTTTCAA
CTGGAAGAAAAAATATGCTGGCCTGATGCCATCCGAGATGAAACGGCTCAGGGAACTCGAGCAGGAGAACGCGCGTCTGAAGAAGATCGTCGCGGATCTC
GCGCTCGACAAGGAAATGCTGCAGGACGTCATTAAGCGAAAGCTTTGAGGCCTGCCCGGAAAAGGTCGCTGGTCGACGGGATGCGGGCGGATTGGCAGGT
GTCGATCCGCCGGGCCTGCGAGGTGATCCGGTTCGATCCGAGAACCTATCGCTACAAATCCCGCCGGCCTGGGCAGGCCGCTTTGGAACAGCGGATACGA
GAGATTTGCCAGACGCGCGTGCGCTTCGGCTACAGGCGCGTGCATGTGCTGCTGCGCCGGGAGGGCTGGGAGATCAACGCCAAGAAGACCTATCGCATTT
ACAAGGAGTTGGGTATGCAACTTCGGAGCAAGACACCTAAGCGCCGGGTGAAGGCCAAGCTGCGGGATGACCGCAAGGAGGCTGTCAGCCCCAATGACGT
CTGGGCTATGGACTTTGTTCATGATCAGCTGGCTACAGGCTGGAAACTTCGGGTTCTGACGGTCGTCGACACCTTCTCACGCTATGTCCCGGTGCTTGAT
GCTCGGTTCACATATCGCGGGGAGGACGTGGTCGCGACGCTTGAGCAAGTATGCAAGCGCACCGGCTACCCAGCCACCATCCGTGTTGACCAGGGCAGCG
AGTTCATCTCCAAGGATATGGACCTTTGGGCCTATGCCAACGACGTGACATTGGACTTCTCCCGTCCGGGCAAACCTACCGACAACGCCTTCATCGAGGC
GTTCAATGGCCGGTTCCGGGCGGAGTGCCTGAACGCGCACTGGTTCATGAGCCTTGAAGATGCAGCCGAAAAGTTGGAGGCTTGGCGTAGAGACTACAAT
GAAGAACGCCCGCACGGGGCTATCGGGAACAAGGTCCCGGCAGACCTGATGAAATCAGTTCACGACACCAGCCCGTGAACCTGATGGAACCGCGGAAATT
CTAACAACGGCCGAGGGCACGTTGGGTAGCACATCA
CGGACGCGCAGAAGGCGTTCATCATCAAGCAGGCGGAGGACGGCACCTCGGTGGCCGAGGTCTGCCGCAAGGCCGGGATCAGCACGGCGACATTTTTCAA
CTGGAAGAAAAAATATGCTGGCCTGATGCCATCCGAGATGAAACGGCTCAGGGAACTCGAGCAGGAGAACGCGCGTCTGAAGAAGATCGTCGCGGATCTC
GCGCTCGACAAGGAAATGCTGCAGGACGTCATTAAGCGAAAGCTTTGAGGCCTGCCCGGAAAAGGTCGCTGGTCGACGGGATGCGGGCGGATTGGCAGGT
GTCGATCCGCCGGGCCTGCGAGGTGATCCGGTTCGATCCGAGAACCTATCGCTACAAATCCCGCCGGCCTGGGCAGGCCGCTTTGGAACAGCGGATACGA
GAGATTTGCCAGACGCGCGTGCGCTTCGGCTACAGGCGCGTGCATGTGCTGCTGCGCCGGGAGGGCTGGGAGATCAACGCCAAGAAGACCTATCGCATTT
ACAAGGAGTTGGGTATGCAACTTCGGAGCAAGACACCTAAGCGCCGGGTGAAGGCCAAGCTGCGGGATGACCGCAAGGAGGCTGTCAGCCCCAATGACGT
CTGGGCTATGGACTTTGTTCATGATCAGCTGGCTACAGGCTGGAAACTTCGGGTTCTGACGGTCGTCGACACCTTCTCACGCTATGTCCCGGTGCTTGAT
GCTCGGTTCACATATCGCGGGGAGGACGTGGTCGCGACGCTTGAGCAAGTATGCAAGCGCACCGGCTACCCAGCCACCATCCGTGTTGACCAGGGCAGCG
AGTTCATCTCCAAGGATATGGACCTTTGGGCCTATGCCAACGACGTGACATTGGACTTCTCCCGTCCGGGCAAACCTACCGACAACGCCTTCATCGAGGC
GTTCAATGGCCGGTTCCGGGCGGAGTGCCTGAACGCGCACTGGTTCATGAGCCTTGAAGATGCAGCCGAAAAGTTGGAGGCTTGGCGTAGAGACTACAAT
GAAGAACGCCCGCACGGGGCTATCGGGAACAAGGTCCCGGCAGACCTGATGAAATCAGTTCACGACACCAGCCCGTGAACCTGATGGAACCGCGGAAATT
CTAACAACGGCCGAGGGCACGTTGGGTAGCACATCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 82 | 348 | + | No |
Description : First part of the transposase
ORF sequence :
MKASKFTDAQKAFIIKQAEDGTSVAEVCRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIVADLALDKEMLQDVIKRKL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
843 bp | 280 aa | 336 | 1178 | + | No |
Description : Second part of the transposase
ORF sequence :
AKALRPARKRSLVDGMRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKTYRIYKELGMQLRSKT
PKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLDARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAY
ANDVTLDFSRPGKPTDNAFIEAFNGRFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
PKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLDARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAY
ANDVTLDFSRPGKPTDNAFIEAFNGRFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1097 bp | 365 aa | 82 | 1178 | + | Yes |
Chemistry : DDE
ORF sequence :
MKASKFTDAQKAFIIKQAEDGTSVAEVCRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIVADLALDKEMLQDVIKRKALRPARKRSLVDG
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKTYRIYKELGMQLRSKTPKRRVKAKLRDDRKE
AVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLDARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPT
DNAFIEAFNGRFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKTYRIYKELGMQLRSKTPKRRVKAKLRDDRKE
AVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLDARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPT
DNAFIEAFNGRFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
Blast result :
Comments
ISSisp1 is 90% (ORFA) and 78% (ORFB) aa similar to ISBrsp1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M., Schell,M.A., Sun,F. and Richardson,P. (2006) Direct submission GenBank.