ISRosp2
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Roseobacter sp. | Roseobacter sp. MED193 |
DNA section
IS Length : 1254 bp
Ends
IR Length : 36/44
IRL : TGACCTGCCCCCCGAAACCTCCCGCGTTCTGATGTAGAGTTTGCTCAACC
IRR : TGACCTGCCCCCCGAGGCTCCCGCGTTCATAACGAGAGTTTGCGGGTTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCACACCTGTC | TATGGGCTAC | 0 |
DNA sequence
TGACCTGCCCCCCGAAACCTCCCGCGTTCTGATGTAGAGTTTGCTCAACCTTTCGAAGGAGCAAACAGATGCGAAAGAGCCGTTTCACGGAAGCCCAGAT
TATTGGGATGATCAAAGAACAAGAAGCCGGAATGCCGACGGCGGAGGTGTGTCGCAAGCATGGGCTCAGTCAGGGCACGTTCTACAAGTTCAAGTCGAAG
TATGGCGGTATGGAAGTGTCGGATGCGGCCAGGCTGAAGGCGCTGGAGGATGAGAATGCCAAGCTCAAGCGCCTGCTGGCTGATACAATGCTGGACAACG
TTGTGCTGAAGGACTTGCTGGGAAAGAGCTGACGACGCCGACCAAGCGACGAGCGGCAGCGCTCCGTGCAATGCGGGAACACGACATCTCGCAGCGCCGG
GTCTGCCGTCTTGTTGGTGTCGATCCCAAAACTGTCAGGCGCGACCGTCCGCCGGACAATCCCGAGATCCGCAAGGAGATGAAGGCTATTGCGAACACGC
GCCGCCGATTTGGCTACCGGCGGATCGGCGTGATGTTGGAACGCAAGGGAATGATCATGAATCACAAGAAGCTGTATCGACTCTATACGGAGGAAAAGCT
TGGCGTCAGGCGACGACGGGGCCGCAAACGGGCCCGTGGGTCACGAACACCGATGCCTGAGGCCCTCAAGCCTGGTGAGCGCTGGTCGCTGGACTTCTTG
TCCGACACGTTCGGGGCATCGCGCAGGTTCCGCATTCTGGCTGTGAACGATGATTGCTGCCGTGAGAACCTGTGCCTGATGGCCGACACCGGCATCTCAG
GGGCGCGCGTCGCCCGGGAGTTAGATGCCCTTGTCCGCATCTATGGGAAACCCGCCAGCATTGTCAGTGACAATGGGACGGAGTTCACCAGTCGGGCGAT
CCTGAAATGGGCCAACGACAATGGCGTGGACTGGCATTACATCGACCCGGGCAAGCCGCAGCAGAATGCCTTTATCGAAAGCTTCAATGGCAGTTTGCGC
GACGAGCTGCTGAACGAGGAGATGTTCGACAGCCTGGAGGATGCCCGCCGAAAACTGGCGCTCTGGCGTTACGACTACAACAACGTCAGGCCGCACTCAT
CTCTTGCGAACCAAACACCCGTAGAAGCGCGTCGAGCGCTTGAGAAATTTGAAGGCTCCGCGCCCGACGCGCTTGCCCAAACCGAAACCGAGGAATATGA
AATCCGAACCCGCAAACTCTCGTTATGAACGCGGGAGCCTCGGGGGGCAGGTCA
TATTGGGATGATCAAAGAACAAGAAGCCGGAATGCCGACGGCGGAGGTGTGTCGCAAGCATGGGCTCAGTCAGGGCACGTTCTACAAGTTCAAGTCGAAG
TATGGCGGTATGGAAGTGTCGGATGCGGCCAGGCTGAAGGCGCTGGAGGATGAGAATGCCAAGCTCAAGCGCCTGCTGGCTGATACAATGCTGGACAACG
TTGTGCTGAAGGACTTGCTGGGAAAGAGCTGACGACGCCGACCAAGCGACGAGCGGCAGCGCTCCGTGCAATGCGGGAACACGACATCTCGCAGCGCCGG
GTCTGCCGTCTTGTTGGTGTCGATCCCAAAACTGTCAGGCGCGACCGTCCGCCGGACAATCCCGAGATCCGCAAGGAGATGAAGGCTATTGCGAACACGC
GCCGCCGATTTGGCTACCGGCGGATCGGCGTGATGTTGGAACGCAAGGGAATGATCATGAATCACAAGAAGCTGTATCGACTCTATACGGAGGAAAAGCT
TGGCGTCAGGCGACGACGGGGCCGCAAACGGGCCCGTGGGTCACGAACACCGATGCCTGAGGCCCTCAAGCCTGGTGAGCGCTGGTCGCTGGACTTCTTG
TCCGACACGTTCGGGGCATCGCGCAGGTTCCGCATTCTGGCTGTGAACGATGATTGCTGCCGTGAGAACCTGTGCCTGATGGCCGACACCGGCATCTCAG
GGGCGCGCGTCGCCCGGGAGTTAGATGCCCTTGTCCGCATCTATGGGAAACCCGCCAGCATTGTCAGTGACAATGGGACGGAGTTCACCAGTCGGGCGAT
CCTGAAATGGGCCAACGACAATGGCGTGGACTGGCATTACATCGACCCGGGCAAGCCGCAGCAGAATGCCTTTATCGAAAGCTTCAATGGCAGTTTGCGC
GACGAGCTGCTGAACGAGGAGATGTTCGACAGCCTGGAGGATGCCCGCCGAAAACTGGCGCTCTGGCGTTACGACTACAACAACGTCAGGCCGCACTCAT
CTCTTGCGAACCAAACACCCGTAGAAGCGCGTCGAGCGCTTGAGAAATTTGAAGGCTCCGCGCCCGACGCGCTTGCCCAAACCGAAACCGAGGAATATGA
AATCCGAACCCGCAAACTCTCGTTATGAACGCGGGAGCCTCGGGGGGCAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
264 bp | 87 aa | 69 | 332 | + | No |
Description : First part of the transposase
ORF sequence :
MRKSRFTEAQIIGMIKEQEAGMPTAEVCRKHGLSQGTFYKFKSKYGGMEVSDAARLKALEDENAKLKRLLADTMLDNVVLKDLLGKS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 284 | 1228 | + | No |
Description : Second part of the transposase
ORF sequence :
YNAGQRCAEGLAGKELTTPTKRRAAALRAMREHDISQRRVCRLVGVDPKTVRRDRPPDNPEIRKEMKAIANTRRRFGYRRIGVMLERKGMIMNHKKLYRL
YTEEKLGVRRRRGRKRARGSRTPMPEALKPGERWSLDFLSDTFGASRRFRILAVNDDCCRENLCLMADTGISGARVARELDALVRIYGKPASIVSDNGTE
FTSRAILKWANDNGVDWHYIDPGKPQQNAFIESFNGSLRDELLNEEMFDSLEDARRKLALWRYDYNNVRPHSSLANQTPVEARRALEKFEGSAPDALAQT
ETEEYEIRTRKLSL
YTEEKLGVRRRRGRKRARGSRTPMPEALKPGERWSLDFLSDTFGASRRFRILAVNDDCCRENLCLMADTGISGARVARELDALVRIYGKPASIVSDNGTE
FTSRAILKWANDNGVDWHYIDPGKPQQNAFIESFNGSLRDELLNEEMFDSLEDARRKLALWRYDYNNVRPHSSLANQTPVEARRALEKFEGSAPDALAQT
ETEEYEIRTRKLSL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1160 bp | 386 aa | 69 | 1228 | + | Yes |
Chemistry : DDE
ORF sequence :
MRKSRFTEAQIIGMIKEQEAGMPTAEVCRKHGLSQGTFYKFKSKYGGMEVSDAARLKALEDENAKLKRLLADTMLDNVVLKDLLGKELTTPTKRRAAALR
AMREHDISQRRVCRLVGVDPKTVRRDRPPDNPEIRKEMKAIANTRRRFGYRRIGVMLERKGMIMNHKKLYRLYTEEKLGVRRRRGRKRARGSRTPMPEAL
KPGERWSLDFLSDTFGASRRFRILAVNDDCCRENLCLMADTGISGARVARELDALVRIYGKPASIVSDNGTEFTSRAILKWANDNGVDWHYIDPGKPQQN
AFIESFNGSLRDELLNEEMFDSLEDARRKLALWRYDYNNVRPHSSLANQTPVEARRALEKFEGSAPDALAQTETEEYEIRTRKLSL
AMREHDISQRRVCRLVGVDPKTVRRDRPPDNPEIRKEMKAIANTRRRFGYRRIGVMLERKGMIMNHKKLYRLYTEEKLGVRRRRGRKRARGSRTPMPEAL
KPGERWSLDFLSDTFGASRRFRILAVNDDCCRENLCLMADTGISGARVARELDALVRIYGKPASIVSDNGTEFTSRAILKWANDNGVDWHYIDPGKPQQN
AFIESFNGSLRDELLNEEMFDSLEDARRKLALWRYDYNNVRPHSSLANQTPVEARRALEKFEGSAPDALAQTETEEYEIRTRKLSL
Blast result :
Comments
Genome in project .
ISRosp2 is 91 % (ORFA) aa similar to ISR1 and 67% (ORFB) aa similar to ISRpa2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISRosp2 is 91 % (ORFA) aa similar to ISR1 and 67% (ORFB) aa similar to ISRpa2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Pinhassi,J., Pedros-Alio,C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.