ISRle5
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008380 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum biovar viciae 3841 |
DNA section
IS Length : 1196 bp
Ends
IR Length : 22/30
IRL : TGGACCAGTATTGGTTAGAGTTTTCCGGTGCATTTTCCTGGCTGGGAAAG
IRR : TGGACCACCGGAGGCTGGAGTTTTCCGGCTTCGTTCAGGGAGGTGGGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTTCAAAC | GAATCCTGGG | 0 |
DNA sequence
TGGACCAGTATTGGTTAGAGTTTTCCGGTGCATTTTCCTGGCTGGGAAAGGAACGGAAGACGATGAAGGCATCGCAGTTTTCGGACGCTCAGAAAGCGCT
TGTTCTGAAGCAGGGTGACGAAGGTGTGCCGGTGGCGGAGATCTGCCGGAGGGCGGGAATCAGCCAGGCGACCTACTTCAATTGGAAGAAATATGCCGGC
ATGTTGCCGCCGGAGATGAAGAAGCTGAGGCAACTCGAGGACGAGAACGCACGGCTGAAGAAGATCGTCGCGGACCTAACACTCGACCGTGAGATGCTGC
AGGACGTCATTCGCCGAAAGCTCTAAGGCCTGCTCGCAAGCGGGAGGTGGTGAAGGGCATGTGCCGCGATTGGGCGATCTCGATCCGGCGTGCCTGTGGG
GCGCTGAACTTCGATCGTTCAAGCTACCACTACACCTCTCGCCGTGCCGATCAGGCCGGCCTGGAACGTCGTATTCGCGAGATCTGCGAAACCCGAGTGC
GCTACGGCTATCGTCGCGTGCATGTGCTCTTAGAGCGTGAGGGTTGGGGCACCAACATCAAGCGAACCTATAAGATTTACAGGGACTTGGGCCTTCAACT
GCGGAACAAAACGCCAAAGCGCCGGGTCAAAGCCAAACTGCGGGAGGATCGGCGAATGGCGGTTGGACCGAATGATGTCTGGGCCATGGACTTCGTTCAC
GACCAGCTGGCGACCGGAAAGAAGTTGCGGGTTCTGACGGTGATCGACACCTTCTCGCGCTATGTGCCGGTGCTTGATCCGCGTCACAGCTATCGCGGTG
AAGACGTCGTGCAAACCTTGGAACGGATATGCCGGCAGGTCGGTTATCCGAAGACGATCCGTGTCGATCAGGGCACGGAATTCGTGTCACGCGATCTCGA
TCTTTGGGCCTATGCCAAGGGTGTGACCTTGGACTTCTCACGTCCAGGCAAGCCGACGGACAATGCCTTCATCGAAGCATTCAACGGCCGCTTCCGAGCC
GAATGTCTGAACCAGCATTGGTTCCTGACCCTTGCGGATGCCCGCGAAAAGATGGAGGATTGGCGCAGAGACTACAATGAGGTTCGGCCACATGGTGCCA
TCGGCAATAAGGTGCCAATCTTACTGATGAATCCGGGAGGCGCAACCAGCCCACCTCCCTGAACGAAGCCGGAAAACTCCAGCCTCCGGTGGTCCA
TGTTCTGAAGCAGGGTGACGAAGGTGTGCCGGTGGCGGAGATCTGCCGGAGGGCGGGAATCAGCCAGGCGACCTACTTCAATTGGAAGAAATATGCCGGC
ATGTTGCCGCCGGAGATGAAGAAGCTGAGGCAACTCGAGGACGAGAACGCACGGCTGAAGAAGATCGTCGCGGACCTAACACTCGACCGTGAGATGCTGC
AGGACGTCATTCGCCGAAAGCTCTAAGGCCTGCTCGCAAGCGGGAGGTGGTGAAGGGCATGTGCCGCGATTGGGCGATCTCGATCCGGCGTGCCTGTGGG
GCGCTGAACTTCGATCGTTCAAGCTACCACTACACCTCTCGCCGTGCCGATCAGGCCGGCCTGGAACGTCGTATTCGCGAGATCTGCGAAACCCGAGTGC
GCTACGGCTATCGTCGCGTGCATGTGCTCTTAGAGCGTGAGGGTTGGGGCACCAACATCAAGCGAACCTATAAGATTTACAGGGACTTGGGCCTTCAACT
GCGGAACAAAACGCCAAAGCGCCGGGTCAAAGCCAAACTGCGGGAGGATCGGCGAATGGCGGTTGGACCGAATGATGTCTGGGCCATGGACTTCGTTCAC
GACCAGCTGGCGACCGGAAAGAAGTTGCGGGTTCTGACGGTGATCGACACCTTCTCGCGCTATGTGCCGGTGCTTGATCCGCGTCACAGCTATCGCGGTG
AAGACGTCGTGCAAACCTTGGAACGGATATGCCGGCAGGTCGGTTATCCGAAGACGATCCGTGTCGATCAGGGCACGGAATTCGTGTCACGCGATCTCGA
TCTTTGGGCCTATGCCAAGGGTGTGACCTTGGACTTCTCACGTCCAGGCAAGCCGACGGACAATGCCTTCATCGAAGCATTCAACGGCCGCTTCCGAGCC
GAATGTCTGAACCAGCATTGGTTCCTGACCCTTGCGGATGCCCGCGAAAAGATGGAGGATTGGCGCAGAGACTACAATGAGGTTCGGCCACATGGTGCCA
TCGGCAATAAGGTGCCAATCTTACTGATGAATCCGGGAGGCGCAACCAGCCCACCTCCCTGAACGAAGCCGGAAAACTCCAGCCTCCGGTGGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
264 bp | 87 aa | 63 | 326 | + | No |
Description : First part of the transposase
ORF sequence :
MKASQFSDAQKALVLKQGDEGVPVAEICRRAGISQATYFNWKKYAGMLPPEMKKLRQLEDENARLKKIVADLTLDREMLQDVIRRKL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
870 bp | 289 aa | 293 | 1162 | + | No |
Description : Second part of the transposase
ORF sequence :
DAAGRHSPKALRPARKREVVKGMCRDWAISIRRACGALNFDRSSYHYTSRRADQAGLERRIREICETRVRYGYRRVHVLLEREGWGTNIKRTYKIYRDLG
LQLRNKTPKRRVKAKLREDRRMAVGPNDVWAMDFVHDQLATGKKLRVLTVIDTFSRYVPVLDPRHSYRGEDVVQTLERICRQVGYPKTIRVDQGTEFVSR
DLDLWAYAKGVTLDFSRPGKPTDNAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRDYNEVRPHGAIGNKVPILLMNPGGATSPPP
LQLRNKTPKRRVKAKLREDRRMAVGPNDVWAMDFVHDQLATGKKLRVLTVIDTFSRYVPVLDPRHSYRGEDVVQTLERICRQVGYPKTIRVDQGTEFVSR
DLDLWAYAKGVTLDFSRPGKPTDNAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRDYNEVRPHGAIGNKVPILLMNPGGATSPPP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1100 bp | 366 aa | 63 | 1162 | + | Yes |
Chemistry : DDE
ORF sequence :
MKASQFSDAQKALVLKQGDEGVPVAEICRRAGISQATYFNWKKYAGMLPPEMKKLRQLEDENARLKKIVADLTLDREMLQDVIRRKALRPARKREVVKGM
CRDWAISIRRACGALNFDRSSYHYTSRRADQAGLERRIREICETRVRYGYRRVHVLLEREGWGTNIKRTYKIYRDLGLQLRNKTPKRRVKAKLREDRRMA
VGPNDVWAMDFVHDQLATGKKLRVLTVIDTFSRYVPVLDPRHSYRGEDVVQTLERICRQVGYPKTIRVDQGTEFVSRDLDLWAYAKGVTLDFSRPGKPTD
NAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRDYNEVRPHGAIGNKVPILLMNPGGATSPPP
CRDWAISIRRACGALNFDRSSYHYTSRRADQAGLERRIREICETRVRYGYRRVHVLLEREGWGTNIKRTYKIYRDLGLQLRNKTPKRRVKAKLREDRRMA
VGPNDVWAMDFVHDQLATGKKLRVLTVIDTFSRYVPVLDPRHSYRGEDVVQTLERICRQVGYPKTIRVDQGTEFVSRDLDLWAYAKGVTLDFSRPGKPTD
NAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRDYNEVRPHGAIGNKVPILLMNPGGATSPPP
Blast result :
Comments
ISRle5 is 90% (ORFA) and 80% (ORFB) aa similar to ISBrsp1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Young,J.W., Crossman,L.C., Johnston,A.W.B., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R.J., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,A., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Direct submission GenBank.