ISLpn8
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002942 | ND | Legionella pneumophila | Legionella pneumophila subsp. pneumophila |
DNA section
IS Length : 1199 bp
Ends
IR Length : 32/42
IRL : TGTAACCATCCCCTAAAATAGTTGTATTCCTGATTAGAGTTCTCCAAGTT
IRR : TGTAAACCCCCCATATTTAGTGGCATCCTAAATTAGAGTTCATTGGCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGTTGTCTT | GCTACAATTT | 0 |
DNA sequence
TGTAACCATCCCCTAAAATAGTTGTATTCCTGATTAGAGTTCTCCAAGTTAAACTACCACTAAGGAGAACGAAGATGAAAAAATCGCGTTATACAGAAAC
TCAGATTGTCAAAATTCTAAAAGAGGTTGAAGCAGGCAGACTGGTTAAAGAAATTTGTCGTGAATATGGTATTTCTGACGCAACATATTACAACTGGAAA
GCAAAATATGGAGGCATGGAGTCATCAGACATAAAGCGTCTGAAAGACCTTGAAGAAGAGAACCGTCGTCTAAAGCAGATGTACGCTGAACTGAGTCTTG
ATCACAAAATCCTGAAGGATATTGTTGAAAAAAAGCTGTGAAGCCAACTGTGCGTCGGGAGTTGGTTGATTATGCAGTCAATGCTCATGCTGTGAGTTTA
CGCCGCGCTTGCAAGGTTGTGGGTATCAACGACTCGGTTTATCGCTATAAGCCGGATAGTCGGTCTGATGAAAGTGTCATTGTGGCATTACAAGAATCAT
CTGAACGTTACCCAGCGTATGGCTTCAGTAAATTGCTTAAGGTCTTACGGCGCCAGGGGCACAAATGGAATCATAAACGGGTTTACCGTGTGTATTGTGA
GCTTAAGCTCAATATGCGTCGCAAGGGAAAAAAGCGGTTACCCAATCGCTCACCTGGACCTCTGAGTGTGCCAGCGTCCATTAACCAGTGTTGGTCAATG
GACTTTATGTGCGATGCATTGATGTGTGGTCGACGCTTCCGAACATTTAACATAGTGGATGATTTCAATCGTGAAGTGTTAGCGATCGAGATAGATTTGA
ACCTGCCCGCACAGCGAGTAATTCGCGTATTAGAACGTGTTGTTGCCTGGCGTGGTCTCCCTGCCAAACTACGTATGGATAATGGTCCTGAATTTATTTC
CAGAGCCCTAGCTGATTGGGCAGAAAAAAATAAGGTGCAGTTGGAATTTATCAAGCCAGCCAAGCCAACACAAAATTCATTTATTGAGCGATTCAATAGA
ACTTATCGCACAGAAATACTGGATATGTATGCGTTCAAAAATTTACACGAAGTAAGAGAGTTAACAGAAAACTGGATAAAGGAGTACAACGACGAAAGAC
CCCATGATTCACTAAATGATTTAACGCCGTGGGAATATCTGGCAAAAAATCAGCCAATGAACTCTAATTTAGGATGCCACTAAATATGGGGGGTTTACA
TCAGATTGTCAAAATTCTAAAAGAGGTTGAAGCAGGCAGACTGGTTAAAGAAATTTGTCGTGAATATGGTATTTCTGACGCAACATATTACAACTGGAAA
GCAAAATATGGAGGCATGGAGTCATCAGACATAAAGCGTCTGAAAGACCTTGAAGAAGAGAACCGTCGTCTAAAGCAGATGTACGCTGAACTGAGTCTTG
ATCACAAAATCCTGAAGGATATTGTTGAAAAAAAGCTGTGAAGCCAACTGTGCGTCGGGAGTTGGTTGATTATGCAGTCAATGCTCATGCTGTGAGTTTA
CGCCGCGCTTGCAAGGTTGTGGGTATCAACGACTCGGTTTATCGCTATAAGCCGGATAGTCGGTCTGATGAAAGTGTCATTGTGGCATTACAAGAATCAT
CTGAACGTTACCCAGCGTATGGCTTCAGTAAATTGCTTAAGGTCTTACGGCGCCAGGGGCACAAATGGAATCATAAACGGGTTTACCGTGTGTATTGTGA
GCTTAAGCTCAATATGCGTCGCAAGGGAAAAAAGCGGTTACCCAATCGCTCACCTGGACCTCTGAGTGTGCCAGCGTCCATTAACCAGTGTTGGTCAATG
GACTTTATGTGCGATGCATTGATGTGTGGTCGACGCTTCCGAACATTTAACATAGTGGATGATTTCAATCGTGAAGTGTTAGCGATCGAGATAGATTTGA
ACCTGCCCGCACAGCGAGTAATTCGCGTATTAGAACGTGTTGTTGCCTGGCGTGGTCTCCCTGCCAAACTACGTATGGATAATGGTCCTGAATTTATTTC
CAGAGCCCTAGCTGATTGGGCAGAAAAAAATAAGGTGCAGTTGGAATTTATCAAGCCAGCCAAGCCAACACAAAATTCATTTATTGAGCGATTCAATAGA
ACTTATCGCACAGAAATACTGGATATGTATGCGTTCAAAAATTTACACGAAGTAAGAGAGTTAACAGAAAACTGGATAAAGGAGTACAACGACGAAAGAC
CCCATGATTCACTAAATGATTTAACGCCGTGGGAATATCTGGCAAAAAATCAGCCAATGAACTCTAATTTAGGATGCCACTAAATATGGGGGGTTTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 75 | 341 | + | No |
Description : First part of the transposase
ORF sequence :
MKKSRYTETQIVKILKEVEAGRLVKEICREYGISDATYYNWKAKYGGMESSDIKRLKDLEEENRRLKQMYAELSLDHKILKDIVEKKL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
855 bp | 284 aa | 329 | 1183 | + | No |
Description : Second part of the transposase
ORF sequence :
KKAVKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHKRVYRVYCELKLNMRRKG
KKRLPNRSPGPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEK
NKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVRELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
KKRLPNRSPGPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEK
NKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVRELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1109 bp | 370 aa | 75 | 1183 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKSRYTETQIVKILKEVEAGRLVKEICREYGISDATYYNWKAKYGGMESSDIKRLKDLEEENRRLKQMYAELSLDHKILKDIVEKKAVMKPTVRRELVD
YAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHKRVYRVYCELKLNMRRKGKKRLPNRSPGPLSV
PASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEKNKVQLEFIKPAKPT
QNSFIERFNRTYRTEILDMYAFKNLHEVRELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
YAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHKRVYRVYCELKLNMRRKGKKRLPNRSPGPLSV
PASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEKNKVQLEFIKPAKPT
QNSFIERFNRTYRTEILDMYAFKNLHEVRELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
Blast result :
Comments
ISLpn8 is 92 % (ORFA) aa similar to IS1351 and 78% (ORFB) aa similar to ISD1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Chien,M., Morozova,I., Shi,S., Sheng,H., Chen,J., Gomez,S.M., Asamani,G., Hill,K., Nuara,J., Feder,M., Rineer,J., Greenberg,J.J., Steshenko,V., Park,S.H., Zhao,B., Teplitskaya,E., Edwards,J.R., Pampou,S., Georghiou,A., Chou,I.C., Iannuccilli,W., Ulz,M.E., Kim,D.H., Geringer-Sameth,A., Goldsberry,C., Morozov,P., Fischer,S.G., Segal,G., Qu,X., Rzhetsky,A., Zhang,P., Cayanis,E., De Jong,P.J., Ju,J., Kalachikov,S., Shuman,H.A. and Russo,J.J. (2004) Science 305 (5692), 1966-1968.