ISCmi3
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Clavibacter michiganensis | Clavibacter michiganensis subspecies sepedonicus |
DNA section
IS Length : 1459 bp
Ends
IR Length : 26/28
IRL : GGCGGATTCTCGTGGTCCCCGCAACACCCTGAGTTCAGGGGGTTGCGGGG
IRR : GGCGGATTCTCGTGGTCGTCGCAACACCTGATGATTTAGATGGTTGTCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGGCCCGTCGCCTC | CTCG | GAGGTGGCGGGCCGTCGT | 4 |
DNA sequence
GGCGGATTCTCGTGGTCCCCGCAACACCCTGAGTTCAGGGGGTTGCGGGGATCGTGGTTTCGGGTGAGTTGCGGCGGGAGTTCTTCGAGGTACTGGACCG
GGTCGATGGCAGCATCACGGCTGCTGCGGCTGTGGTCGGGGTGAGTCGGAACACCGCGTACGGGTGGGCGCGCACGGCTGGTGTGCGTGGGCGCGGGAAG
TCCGGTACAGCGGGGCATCCAGGGCGTGGCGAGTACGAGCGGCTCCGCGTGGAGGGGATGTCCCGGCGGGTAGCCGCGTCGCGGGTCGGTGTGCATGAGC
GCACTGCGCAGGACTGGGACCGCGGCTGGATGAAGCGGGGCAGTGTTCGGATTCATGCTGATGGTCGGCGGATCGAGTACAACACCGGGATGGCTACCAT
CACGGGACCGCGTCTGCCCGCTGTCGACGCTGTTCTGCATCCGCGGTTCCTGACCGTGATCGAGCGGGAGACGATCGCGGATCTGCGCCGTCAGGACCTG
TCGCTGCGCGCGATCGGGCGGGTTCTGGGTCGGCCGGCATCGACGATCAAACGCGAGCTCGATGCCCGCACGGTCGCGGGGACCTACCAGCCCCACGCGG
CGCACCGGGCCTGGGCAGCGAGCCGCTCTCGTCCGAAGCGGGCGAAGCTCGCTCAGGACGGGCCGCTGCGGGACTACGTCGCACGCAAGCTGATGCTGCG
CTGGTCACCGGAGCAGATCTCCCGCCTGCTGGTTCGGGAGTTCCCGGGCGAGGAGAGTATGCGGGTGAGCACGGAGACGATCTACCAAGCGATCTACGTC
CAGGCCCGCGGCGGACTGCGCCGCGAAGTCGCCGACGCGTTACGCACCGGCCGCACCCGCCGCAGACCCCGCACCCGCCCAGAGCATCGCACTCAACGGT
TCGTGGACCCGATGGTCATGATCGCTGACCGGCCCGCGGAGATCGAGGACCGGGCAGTCCCTGGGCATTGGGAGGGTGATCTGATCGTCGGCACGAGCTC
ACAGTCCGCGATCGTGACTCTGGTCGAACGCACCACCCGCTACGTCATGCTCGGCCATCTCCCCGGCGGGCATACCGCCGAGGAAGTCCGTGACGTGCTC
GTGCCCTTGATCAGCACCCTGCCTGCACACCTACGTGGATCGTTGACCTGGGACCAGGGCGCTGAGATGGCGAGCCACCGCCAGATCAGCATCCAGGCCG
GAATCCCGGTCTATTTCTGCGATCCGCACTCACCCTGGCAACGCGGCAGCAACGAGAACACCAACGGACTCCTGCGCCAGTACTTCCCTAAGGGCACCGA
TCTCGCCGCCCATACCTCCGCCGACCTCGAACATGTCGCTCAGCAGCTCAACGGCCGACCACGCAAAACGCTCGACTGGGACACCCCAGCCGAGCGAATG
CGTGCTCTACTGACAACCATCTAAATCATCAGGTGTTGCGACGACCACGAGAATCCGCC
GGTCGATGGCAGCATCACGGCTGCTGCGGCTGTGGTCGGGGTGAGTCGGAACACCGCGTACGGGTGGGCGCGCACGGCTGGTGTGCGTGGGCGCGGGAAG
TCCGGTACAGCGGGGCATCCAGGGCGTGGCGAGTACGAGCGGCTCCGCGTGGAGGGGATGTCCCGGCGGGTAGCCGCGTCGCGGGTCGGTGTGCATGAGC
GCACTGCGCAGGACTGGGACCGCGGCTGGATGAAGCGGGGCAGTGTTCGGATTCATGCTGATGGTCGGCGGATCGAGTACAACACCGGGATGGCTACCAT
CACGGGACCGCGTCTGCCCGCTGTCGACGCTGTTCTGCATCCGCGGTTCCTGACCGTGATCGAGCGGGAGACGATCGCGGATCTGCGCCGTCAGGACCTG
TCGCTGCGCGCGATCGGGCGGGTTCTGGGTCGGCCGGCATCGACGATCAAACGCGAGCTCGATGCCCGCACGGTCGCGGGGACCTACCAGCCCCACGCGG
CGCACCGGGCCTGGGCAGCGAGCCGCTCTCGTCCGAAGCGGGCGAAGCTCGCTCAGGACGGGCCGCTGCGGGACTACGTCGCACGCAAGCTGATGCTGCG
CTGGTCACCGGAGCAGATCTCCCGCCTGCTGGTTCGGGAGTTCCCGGGCGAGGAGAGTATGCGGGTGAGCACGGAGACGATCTACCAAGCGATCTACGTC
CAGGCCCGCGGCGGACTGCGCCGCGAAGTCGCCGACGCGTTACGCACCGGCCGCACCCGCCGCAGACCCCGCACCCGCCCAGAGCATCGCACTCAACGGT
TCGTGGACCCGATGGTCATGATCGCTGACCGGCCCGCGGAGATCGAGGACCGGGCAGTCCCTGGGCATTGGGAGGGTGATCTGATCGTCGGCACGAGCTC
ACAGTCCGCGATCGTGACTCTGGTCGAACGCACCACCCGCTACGTCATGCTCGGCCATCTCCCCGGCGGGCATACCGCCGAGGAAGTCCGTGACGTGCTC
GTGCCCTTGATCAGCACCCTGCCTGCACACCTACGTGGATCGTTGACCTGGGACCAGGGCGCTGAGATGGCGAGCCACCGCCAGATCAGCATCCAGGCCG
GAATCCCGGTCTATTTCTGCGATCCGCACTCACCCTGGCAACGCGGCAGCAACGAGAACACCAACGGACTCCTGCGCCAGTACTTCCCTAAGGGCACCGA
TCTCGCCGCCCATACCTCCGCCGACCTCGAACATGTCGCTCAGCAGCTCAACGGCCGACCACGCAAAACGCTCGACTGGGACACCCCAGCCGAGCGAATG
CGTGCTCTACTGACAACCATCTAAATCATCAGGTGTTGCGACGACCACGAGAATCCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 258 | 1424 | + | No |
Chemistry : DDE
ORF sequence :
MSRRVAASRVGVHERTAQDWDRGWMKRGSVRIHADGRRIEYNTGMATITGPRLPAVDAVLHPRFLTVIERETIADLRRQDLSLRAIGRVLGRPASTIKRE
LDARTVAGTYQPHAAHRAWAASRSRPKRAKLAQDGPLRDYVARKLMLRWSPEQISRLLVREFPGEESMRVSTETIYQAIYVQARGGLRREVADALRTGRT
RRRPRTRPEHRTQRFVDPMVMIADRPAEIEDRAVPGHWEGDLIVGTSSQSAIVTLVERTTRYVMLGHLPGGHTAEEVRDVLVPLISTLPAHLRGSLTWDQ
GAEMASHRQISIQAGIPVYFCDPHSPWQRGSNENTNGLLRQYFPKGTDLAAHTSADLEHVAQQLNGRPRKTLDWDTPAERMRALLTTI
LDARTVAGTYQPHAAHRAWAASRSRPKRAKLAQDGPLRDYVARKLMLRWSPEQISRLLVREFPGEESMRVSTETIYQAIYVQARGGLRREVADALRTGRT
RRRPRTRPEHRTQRFVDPMVMIADRPAEIEDRAVPGHWEGDLIVGTSSQSAIVTLVERTTRYVMLGHLPGGHTAEEVRDVLVPLISTLPAHLRGSLTWDQ
GAEMASHRQISIQAGIPVYFCDPHSPWQRGSNENTNGLLRQYFPKGTDLAAHTSADLEHVAQQLNGRPRKTLDWDTPAERMRALLTTI
Blast result :
Comments
ISCmi3 is 67% aa similar to ISLxx5.
References
1] Bentley, S. (2007) Direct submission GenBank.