ISCmi3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Clavibacter michiganensis
Clavibacter michiganensis subspecies sepedonicus
DNA section
IS Length : 1459 bp

Ends


IR Length : 26/28

IRL : GGCGGATTCTCGTGGTCCCCGCAACACCCTGAGTTCAGGGGGTTGCGGGG
IRR : GGCGGATTCTCGTGGTCGTCGCAACACCTGATGATTTAGATGGTTGTCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GACGGCCCGTCGCCTCCTCGGAGGTGGCGGGCCGTCGT4

DNA sequence

GGCGGATTCTCGTGGTCCCCGCAACACCCTGAGTTCAGGGGGTTGCGGGGATCGTGGTTTCGGGTGAGTTGCGGCGGGAGTTCTTCGAGGTACTGGACCG
GGTCGATGGCAGCATCACGGCTGCTGCGGCTGTGGTCGGGGTGAGTCGGAACACCGCGTACGGGTGGGCGCGCACGGCTGGTGTGCGTGGGCGCGGGAAG
TCCGGTACAGCGGGGCATCCAGGGCGTGGCGAGTACGAGCGGCTCCGCGTGGAGGGGATGTCCCGGCGGGTAGCCGCGTCGCGGGTCGGTGTGCATGAGC
GCACTGCGCAGGACTGGGACCGCGGCTGGATGAAGCGGGGCAGTGTTCGGATTCATGCTGATGGTCGGCGGATCGAGTACAACACCGGGATGGCTACCAT
CACGGGACCGCGTCTGCCCGCTGTCGACGCTGTTCTGCATCCGCGGTTCCTGACCGTGATCGAGCGGGAGACGATCGCGGATCTGCGCCGTCAGGACCTG
TCGCTGCGCGCGATCGGGCGGGTTCTGGGTCGGCCGGCATCGACGATCAAACGCGAGCTCGATGCCCGCACGGTCGCGGGGACCTACCAGCCCCACGCGG
CGCACCGGGCCTGGGCAGCGAGCCGCTCTCGTCCGAAGCGGGCGAAGCTCGCTCAGGACGGGCCGCTGCGGGACTACGTCGCACGCAAGCTGATGCTGCG
CTGGTCACCGGAGCAGATCTCCCGCCTGCTGGTTCGGGAGTTCCCGGGCGAGGAGAGTATGCGGGTGAGCACGGAGACGATCTACCAAGCGATCTACGTC
CAGGCCCGCGGCGGACTGCGCCGCGAAGTCGCCGACGCGTTACGCACCGGCCGCACCCGCCGCAGACCCCGCACCCGCCCAGAGCATCGCACTCAACGGT
TCGTGGACCCGATGGTCATGATCGCTGACCGGCCCGCGGAGATCGAGGACCGGGCAGTCCCTGGGCATTGGGAGGGTGATCTGATCGTCGGCACGAGCTC
ACAGTCCGCGATCGTGACTCTGGTCGAACGCACCACCCGCTACGTCATGCTCGGCCATCTCCCCGGCGGGCATACCGCCGAGGAAGTCCGTGACGTGCTC
GTGCCCTTGATCAGCACCCTGCCTGCACACCTACGTGGATCGTTGACCTGGGACCAGGGCGCTGAGATGGCGAGCCACCGCCAGATCAGCATCCAGGCCG
GAATCCCGGTCTATTTCTGCGATCCGCACTCACCCTGGCAACGCGGCAGCAACGAGAACACCAACGGACTCCTGCGCCAGTACTTCCCTAAGGGCACCGA
TCTCGCCGCCCATACCTCCGCCGACCTCGAACATGTCGCTCAGCAGCTCAACGGCCGACCACGCAAAACGCTCGACTGGGACACCCCAGCCGAGCGAATG
CGTGCTCTACTGACAACCATCTAAATCATCAGGTGTTGCGACGACCACGAGAATCCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa2581424+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRRVAASRVGVHERTAQDWDRGWMKRGSVRIHADGRRIEYNTGMATITGPRLPAVDAVLHPRFLTVIERETIADLRRQDLSLRAIGRVLGRPASTIKRE
LDARTVAGTYQPHAAHRAWAASRSRPKRAKLAQDGPLRDYVARKLMLRWSPEQISRLLVREFPGEESMRVSTETIYQAIYVQARGGLRREVADALRTGRT
RRRPRTRPEHRTQRFVDPMVMIADRPAEIEDRAVPGHWEGDLIVGTSSQSAIVTLVERTTRYVMLGHLPGGHTAEEVRDVLVPLISTLPAHLRGSLTWDQ
GAEMASHRQISIQAGIPVYFCDPHSPWQRGSNENTNGLLRQYFPKGTDLAAHTSADLEHVAQQLNGRPRKTLDWDTPAERMRALLTTI

 

Blast result :
Comments
ISCmi3 is 67% aa similar to ISLxx5.
References
1] Bentley, S. (2007) Direct submission GenBank.