ISCmi2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Clavibacter michiganensis
Clavibacter michiganensis subspecies sepedonicus
DNA section
IS Length : 1054 bp

Ends


IR Length : 24/27

IRL : TGTAGTTCCTGGGGAGGTTGTGAACGCTGGGGCGGATAGCGAAGACCTCC
IRR : TGTAGTTCCCAGTGAGGTTGTGAACGCGTTCGGCGGGCGTGAGTCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGCGGCGGACGCGGCGGCTAGGTGTACTGGGTCATGACGTT6

DNA sequence

TGTAGTTCCTGGGGAGGTTGTGAACGCTGGGGCGGATAGCGAAGACCTCCGGGACGATGTGGGTTACCACACTCATCAACGTCCACGGAGGTCTTCGTGA
CTCACGCTAACGCCCCGTTCACTCCCGCGGGCAGGGTTCGGCTTGCCCGGTTGATCATCGAGGACGGGTGGCCGGTCCGGCGTGCGGCGGAGAGGTTCCA
GTGCTCGCCGGCGACGGCGTCGAGATGGGCTCGCCGGTATCGGGCCGGGTTGCCGATGACGGACCGCTCATCCCGCCCGCACCGGCAACCGACCCGCACG
AGTCAGCGTCGGGAGCGGCGGATCATCGCGCTGAGATTCACTCGCCGGTGGGGCCCGCACCGCATCAGCTATCACCTCCGCGTTCCGCGTTCGACGGTCG
AGCGGGTGCTGAACCGGTATCGGATGCCGTTGCTCGAGCACGTCGATCTGAGCACCGGGCTCCCTGCCCGGCGGTCTCCTGCCCGACGCTACGAGCACTC
CTCGCCGGGAGATCTGGTCCACGTCGACATCAAGAAGCTCGGCCGCATCCCGGACGGCGGCGGGCACCGAGTCCTCGGCAGAGCGGCCGGCCGGAGGAAC
ACTCCCCGGACCGGGCGGGGATACGCGTTCCTGCACCACGCCGTGGATGACCACTCCCGACTCGCGTACTCCGAGATCCTCACCGACGAGCGCAAGGAGA
CCGCCGCCGCGTTCTGGGCCCGCGCGAACGCGTTCTTCACCACCGCGGGCATCACCGTGATCCGTGTCCTGACGGACAACGGCTCCTGCTACCGCTCCCA
CGCCTTCACCGAGGCGCTCGGATCGATCACGCACAAACGCACCCGCCCGTACCGGCCCCAGACGAACGGGAAGGTCGAGCGCTTCAACCGCACCCTCGCC
ACGGAATGGGCTTACGCCCATCCCTATCGCACCGACGAGGCCCGCGCCGCGACCTACCCTGCCTGGCTGCATCACTACAACCACCACCGCCCCCACACCG
GCATCGGCGGACTCACGCCCGCCGAACGCGTTCACAACCTCACTGGGAACTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp320 aa971044+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VTHANAPFTPVGRVRLARLIIEDGWPVRRAAERFQCSPATASRWARRYRAGLPMTDRSSRPHRQPTRTSQRRERRIIALRFTRRWGPHRISYHLRVPRST
VERVLNRYRMPLLEHVDLSTGLPARRSPARRYEHSSPGDLVHVDIKKLGRIPDGGGHRVLGRAAGRRNTPRTGRGYAFLHHAVDDHSRLAYSEILTDERK
ETAAAFWARANAFFTTAGITVIRVLTDNGSCYRSHAFTEALGTIAHTRTRPYRPQTNGKVERFNRTLATEWAYAHPYRTDEARAATYPAWLHHYNHHRPH
TGIGGLTPAERVHNL

 

Blast result :
Comments
ISCmi2 is 80% aa similar to ISMyma6. The stop codon is in IRR
References
1] Bentley, S. (2007) Direct submission.