ISCmi2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Clavibacter michiganensis | Clavibacter michiganensis subspecies sepedonicus |
DNA section
IS Length : 1054 bp
Ends
IR Length : 24/27
IRL : TGTAGTTCCTGGGGAGGTTGTGAACGCTGGGGCGGATAGCGAAGACCTCC
IRR : TGTAGTTCCCAGTGAGGTTGTGAACGCGTTCGGCGGGCGTGAGTCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGCGGCGGACGCGGCG | GCTAGG | TGTACTGGGTCATGACGTT | 6 |
DNA sequence
TGTAGTTCCTGGGGAGGTTGTGAACGCTGGGGCGGATAGCGAAGACCTCCGGGACGATGTGGGTTACCACACTCATCAACGTCCACGGAGGTCTTCGTGA
CTCACGCTAACGCCCCGTTCACTCCCGCGGGCAGGGTTCGGCTTGCCCGGTTGATCATCGAGGACGGGTGGCCGGTCCGGCGTGCGGCGGAGAGGTTCCA
GTGCTCGCCGGCGACGGCGTCGAGATGGGCTCGCCGGTATCGGGCCGGGTTGCCGATGACGGACCGCTCATCCCGCCCGCACCGGCAACCGACCCGCACG
AGTCAGCGTCGGGAGCGGCGGATCATCGCGCTGAGATTCACTCGCCGGTGGGGCCCGCACCGCATCAGCTATCACCTCCGCGTTCCGCGTTCGACGGTCG
AGCGGGTGCTGAACCGGTATCGGATGCCGTTGCTCGAGCACGTCGATCTGAGCACCGGGCTCCCTGCCCGGCGGTCTCCTGCCCGACGCTACGAGCACTC
CTCGCCGGGAGATCTGGTCCACGTCGACATCAAGAAGCTCGGCCGCATCCCGGACGGCGGCGGGCACCGAGTCCTCGGCAGAGCGGCCGGCCGGAGGAAC
ACTCCCCGGACCGGGCGGGGATACGCGTTCCTGCACCACGCCGTGGATGACCACTCCCGACTCGCGTACTCCGAGATCCTCACCGACGAGCGCAAGGAGA
CCGCCGCCGCGTTCTGGGCCCGCGCGAACGCGTTCTTCACCACCGCGGGCATCACCGTGATCCGTGTCCTGACGGACAACGGCTCCTGCTACCGCTCCCA
CGCCTTCACCGAGGCGCTCGGATCGATCACGCACAAACGCACCCGCCCGTACCGGCCCCAGACGAACGGGAAGGTCGAGCGCTTCAACCGCACCCTCGCC
ACGGAATGGGCTTACGCCCATCCCTATCGCACCGACGAGGCCCGCGCCGCGACCTACCCTGCCTGGCTGCATCACTACAACCACCACCGCCCCCACACCG
GCATCGGCGGACTCACGCCCGCCGAACGCGTTCACAACCTCACTGGGAACTACA
CTCACGCTAACGCCCCGTTCACTCCCGCGGGCAGGGTTCGGCTTGCCCGGTTGATCATCGAGGACGGGTGGCCGGTCCGGCGTGCGGCGGAGAGGTTCCA
GTGCTCGCCGGCGACGGCGTCGAGATGGGCTCGCCGGTATCGGGCCGGGTTGCCGATGACGGACCGCTCATCCCGCCCGCACCGGCAACCGACCCGCACG
AGTCAGCGTCGGGAGCGGCGGATCATCGCGCTGAGATTCACTCGCCGGTGGGGCCCGCACCGCATCAGCTATCACCTCCGCGTTCCGCGTTCGACGGTCG
AGCGGGTGCTGAACCGGTATCGGATGCCGTTGCTCGAGCACGTCGATCTGAGCACCGGGCTCCCTGCCCGGCGGTCTCCTGCCCGACGCTACGAGCACTC
CTCGCCGGGAGATCTGGTCCACGTCGACATCAAGAAGCTCGGCCGCATCCCGGACGGCGGCGGGCACCGAGTCCTCGGCAGAGCGGCCGGCCGGAGGAAC
ACTCCCCGGACCGGGCGGGGATACGCGTTCCTGCACCACGCCGTGGATGACCACTCCCGACTCGCGTACTCCGAGATCCTCACCGACGAGCGCAAGGAGA
CCGCCGCCGCGTTCTGGGCCCGCGCGAACGCGTTCTTCACCACCGCGGGCATCACCGTGATCCGTGTCCTGACGGACAACGGCTCCTGCTACCGCTCCCA
CGCCTTCACCGAGGCGCTCGGATCGATCACGCACAAACGCACCCGCCCGTACCGGCCCCAGACGAACGGGAAGGTCGAGCGCTTCAACCGCACCCTCGCC
ACGGAATGGGCTTACGCCCATCCCTATCGCACCGACGAGGCCCGCGCCGCGACCTACCCTGCCTGGCTGCATCACTACAACCACCACCGCCCCCACACCG
GCATCGGCGGACTCACGCCCGCCGAACGCGTTCACAACCTCACTGGGAACTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 320 aa | 97 | 1044 | + | No |
Chemistry : DDE
ORF sequence :
VTHANAPFTPVGRVRLARLIIEDGWPVRRAAERFQCSPATASRWARRYRAGLPMTDRSSRPHRQPTRTSQRRERRIIALRFTRRWGPHRISYHLRVPRST
VERVLNRYRMPLLEHVDLSTGLPARRSPARRYEHSSPGDLVHVDIKKLGRIPDGGGHRVLGRAAGRRNTPRTGRGYAFLHHAVDDHSRLAYSEILTDERK
ETAAAFWARANAFFTTAGITVIRVLTDNGSCYRSHAFTEALGTIAHTRTRPYRPQTNGKVERFNRTLATEWAYAHPYRTDEARAATYPAWLHHYNHHRPH
TGIGGLTPAERVHNL
VERVLNRYRMPLLEHVDLSTGLPARRSPARRYEHSSPGDLVHVDIKKLGRIPDGGGHRVLGRAAGRRNTPRTGRGYAFLHHAVDDHSRLAYSEILTDERK
ETAAAFWARANAFFTTAGITVIRVLTDNGSCYRSHAFTEALGTIAHTRTRPYRPQTNGKVERFNRTLATEWAYAHPYRTDEARAATYPAWLHHYNHHRPH
TGIGGLTPAERVHNL
Blast result :
Comments
ISCmi2 is 80% aa similar to ISMyma6. The stop codon is in IRR
References
1] Bentley, S. (2007) Direct submission.