ISPae1
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAIJ01000014 | ND | Prosthecochloris aestuarii | Prosthecochloris aestuarii DSM 271 |
DNA section
IS Length : 1196 bp
Ends
IR Length : 28/42
IRL : GGACGTGAGCCCGAAAAACCGGACCACTTGGTTGTAGAAAAAAAGCTTAA
IRR : GGACGTGCCCCCGATCAATAGACCACTTCTTTTTGGCAAAATTCAGTTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTTAACGA | GTTG | TTATACATTT | 4 |
DNA sequence
GGACGTGAGCCCGAAAAACCGGACCACTTGGTTGTAGAAAAAAAGCTTAAACTCAACCAAGGAGGAATAGGTCATGAAAACCAAGCGTTACAGCACGGAA
CAGATCATCGGGATCCTGAAAGAAGCCGAGGCAGGCATGCCGGTCAAGGAGCTCTGCCGCAAGTACGGCGTCAGCGATGCGACGATTTACAACTGGAAAT
CGAAGTATGCCGGCATGAGCGTCAGCGAGGCGCAGCGTCTCAAGGAGCTTGAAAGCGAGAACCATCGTTTGAAGAAGCTGGTTGCCGATCAGGCGCTCGA
TATCCAGATGCTCAAGGAGATCAATTCAAAAAAGTGGTAACGCCCGAGGCGAAGCGCAATGCCGTCAAGCATTTGCACGATACCTTCGGGCAAAGTCTGA
GAAAGCTCTGTATCTTGATCGGGCTGAACCGTTCAAGCTGGTATTACGAGCCTCAACCGGATAGCAACGAACCAATCAGGAAGCGGTTACGGGAATTGGC
CGATGAGCGCAAACGCTGGGGGTACCGGCGATTGCATTACCTGTTGCGTCGAGAAGGATTTCAGATCAACCACAAACGGACAGAACGGCTGTACCGGGAA
GAAAACCTGATGCTGCGGGTCAGAAGGCGCAGGAAGATGGCCTCAGAGAACCGTGTTGCCCCGCCACCACCGGAGCGGAAGAACCACTGCTGGGCGATGG
ATTTTATGAGCGACAATCTGTATAACGGCCGTCGTTTTCGGGTACTCAACGTGCTGGACAGCTACAGCAGGGATTATCTCGGTTTTGAAGTCGATACCTC
AATCAATGGCAAGCGAGTATGCAGTGTTCTCGAACGGATTGCCTGGTTCAAAGGCTTGCCGGAACTGATCACGGTGGACAATGGCCCAGAATTCATCGGT
AAGGCACTGGATGCCTGGGCACATCGGCATGGAGTGAAGCTGGTGTTCAATCGACCGGGCAAGCCGGTTGACAACACCTATATCGAAAGCTTTAACGGCA
GGCTGCGGGATGAATGCCTGAACGTAAACTGGTTTATGAGTCTGGGGCATGCACGAGAGGTTATCGCAGAATGGCAGGAGGATTACAATTCGGTCCGTCC
GCACAGCTCATTGGGAACGCGGACACCCGAAGAATTTCTGGTTCAGCAAACTGAATTTTGCCAAAAAGAAGTGGTCTATTGATCGGGGGCACGTCC
CAGATCATCGGGATCCTGAAAGAAGCCGAGGCAGGCATGCCGGTCAAGGAGCTCTGCCGCAAGTACGGCGTCAGCGATGCGACGATTTACAACTGGAAAT
CGAAGTATGCCGGCATGAGCGTCAGCGAGGCGCAGCGTCTCAAGGAGCTTGAAAGCGAGAACCATCGTTTGAAGAAGCTGGTTGCCGATCAGGCGCTCGA
TATCCAGATGCTCAAGGAGATCAATTCAAAAAAGTGGTAACGCCCGAGGCGAAGCGCAATGCCGTCAAGCATTTGCACGATACCTTCGGGCAAAGTCTGA
GAAAGCTCTGTATCTTGATCGGGCTGAACCGTTCAAGCTGGTATTACGAGCCTCAACCGGATAGCAACGAACCAATCAGGAAGCGGTTACGGGAATTGGC
CGATGAGCGCAAACGCTGGGGGTACCGGCGATTGCATTACCTGTTGCGTCGAGAAGGATTTCAGATCAACCACAAACGGACAGAACGGCTGTACCGGGAA
GAAAACCTGATGCTGCGGGTCAGAAGGCGCAGGAAGATGGCCTCAGAGAACCGTGTTGCCCCGCCACCACCGGAGCGGAAGAACCACTGCTGGGCGATGG
ATTTTATGAGCGACAATCTGTATAACGGCCGTCGTTTTCGGGTACTCAACGTGCTGGACAGCTACAGCAGGGATTATCTCGGTTTTGAAGTCGATACCTC
AATCAATGGCAAGCGAGTATGCAGTGTTCTCGAACGGATTGCCTGGTTCAAAGGCTTGCCGGAACTGATCACGGTGGACAATGGCCCAGAATTCATCGGT
AAGGCACTGGATGCCTGGGCACATCGGCATGGAGTGAAGCTGGTGTTCAATCGACCGGGCAAGCCGGTTGACAACACCTATATCGAAAGCTTTAACGGCA
GGCTGCGGGATGAATGCCTGAACGTAAACTGGTTTATGAGTCTGGGGCATGCACGAGAGGTTATCGCAGAATGGCAGGAGGATTACAATTCGGTCCGTCC
GCACAGCTCATTGGGAACGCGGACACCCGAAGAATTTCTGGTTCAGCAAACTGAATTTTGCCAAAAAGAAGTGGTCTATTGATCGGGGGCACGTCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 74 | 340 | + | No |
Description : First part of the transposase
ORF sequence :
MKTKRYSTEQIIGILKEAEAGMPVKELCRKYGVSDATIYNWKSKYAGMSVSEAQRLKELESENHRLKKLVADQALDIQMLKEINSKKW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
930 bp | 309 aa | 253 | 1182 | + | No |
Description : Second part of the transposase
ORF sequence :
KREPSFEEAGCRSGARYPDAQGDQFKKVVTPEAKRNAVKHLHDTFGQSLRKLCILIGLNRSSWYYEPQPDSNEPIRKRLRELADERKRWGYRRLHYLLRR
EGFQINHKRTERLYREENLMLRVRRRRKMASENRVAPPPPERKNHCWAMDFMSDNLYNGRRFRVLNVLDSYSRDYLGFEVDTSINGKRVCSVLERIAWFK
GLPELITVDNGPEFIGKALDAWAHRHGVKLVFNRPGKPVDNTYIESFNGRLRDECLNVNWFMSLGHAREVIAEWQEDYNSVRPHSSLGTRTPEEFLVQQT
EFCQKEVVY
EGFQINHKRTERLYREENLMLRVRRRRKMASENRVAPPPPERKNHCWAMDFMSDNLYNGRRFRVLNVLDSYSRDYLGFEVDTSINGKRVCSVLERIAWFK
GLPELITVDNGPEFIGKALDAWAHRHGVKLVFNRPGKPVDNTYIESFNGRLRDECLNVNWFMSLGHAREVIAEWQEDYNSVRPHSSLGTRTPEEFLVQQT
EFCQKEVVY
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1109 bp | 369 aa | 74 | 1182 | + | Yes |
Chemistry : DDE
ORF sequence :
MKTKRYSTEQIIGILKEAEAGMPVKELCRKYGVSDATIYNWKSKYAGMSVSEAQRLKELESENHRLKKLVADQALDIQMLKEINSKKVVTPEAKRNAVKH
LHDTFGQSLRKLCILIGLNRSSWYYEPQPDSNEPIRKRLRELADERKRWGYRRLHYLLRREGFQINHKRTERLYREENLMLRVRRRRKMASENRVAPPPP
ERKNHCWAMDFMSDNLYNGRRFRVLNVLDSYSRDYLGFEVDTSINGKRVCSVLERIAWFKGLPELITVDNGPEFIGKALDAWAHRHGVKLVFNRPGKPVD
NTYIESFNGRLRDECLNVNWFMSLGHAREVIAEWQEDYNSVRPHSSLGTRTPEEFLVQQTEFCQKEVVY
LHDTFGQSLRKLCILIGLNRSSWYYEPQPDSNEPIRKRLRELADERKRWGYRRLHYLLRREGFQINHKRTERLYREENLMLRVRRRRKMASENRVAPPPP
ERKNHCWAMDFMSDNLYNGRRFRVLNVLDSYSRDYLGFEVDTSINGKRVCSVLERIAWFKGLPELITVDNGPEFIGKALDAWAHRHGVKLVFNRPGKPVD
NTYIESFNGRLRDECLNVNWFMSLGHAREVIAEWQEDYNSVRPHSSLGTRTPEEFLVQQTEFCQKEVVY
Blast result :
Comments
Genome in progress.
ISPae1 is 83% (ORFA) and 66% (ORFB) aa similar to IS407. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISPae1 is 83% (ORFA) and 66% (ORFB) aa similar to IS407. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission Genbank.