ISBam2
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUZ01000001.1 | ND | Burkholderia ambifaria | Burkholderia ambifaria MC40-6 |
DNA section
IS Length : 1110 bp
Ends
IR Length : 38/49
IRL : TGACCTGCCCCCTACAAACAGGGCCAGCCGGAGTCTAGTAAAGTTCGTTT
IRR : TGACCTGCCCCCTTCAATAGGGCCAATGGGCTTCTAGCAAAGTCCCTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATTTGTTG | GCAATGCCTT | 0 |
DNA sequence
TGACCTGCCCCCTACAAACAGGGCCAGCCGGAGTCTAGTAAAGTTCGTTTTCGGAGAAGAAGACGAACATGAAGAAGCGCTTTACGGAACAGCAAATCAT
CGGGTTTCTGAAGGAAGCGGAAGCCGGCATGCCGGTCAAGGAACTGTGCAGGAGGCACGGGTTCAGTGACGCGTCGTTCTACACGTGGCGCGCAAAGTTC
GGCGGCATGGAAGTCTCGGAAGCCCGCCGGCTCAAGGACCTCGAGGTGGAGAATGCCCGGCTGAAGAAACTGCTGGCCGAAGCAATGCTCGACATGGAAG
CGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCGAAGCAGTGTCGGCGATTCGGGAGAAGGTCAACATCTCCGAGCGCCGCGCC
TGCCGGCTTGTCGGGCTATCTCGCAGCGTGCTGCATTACGACAAGCGCATCTATTGCCTGTACCGTGAGGCAGGGCTGGCTGTGCGGCGCCGTCGCAAGC
GCCAGGGCGTCATGATTGAGCGCGAGCAACTGGCATTGCCGGGCGCGCCCAACGAGGTGTGGTCAATCGATTTCGTGATGGACGCGCTTTCCAACGGCCG
GCGCGTGAAGTGCCTGACCGTCGTCGACGACTTCACGAAAGAGGCTGTCGACATCGTCGTCGACCATGGCATCTCAGGTTTGTATGTCGCTCGGGCATTG
GACCGTGCAGCTCGCTTCCGTGGCTATCCCAAGGCAGTGCGAACAGACCAGGGCCCCGAATTTACGAGCCGCGCGCTTGACCAGTGGGCGTATGCGAACG
GCGTCACACTGAAGTTGATTCAGGCGGGCAAGCCAACGCAGAATGCGTACATCGAATCGTTCAACGGCAAGTTCCGCGACGAATGCCTTAATGAGCACTG
GTTCACGACGCTCGCGCACGCTCGGGCTGTCATCGCGGCATGGCGTCAGGACTACAACGAGCAAAGGCCGCACAGCGCACTGAACTACCTTGCGCCGTCA
GAGTTTGCGGCGAAACATCGGGCAACCGCGGATGCTCCTGCCGCTTTCCAGGAGTTGGTTTAAAGGGACTTTGCTAGAAGCCCATTGGCCCTATTGAAGG
GGGCAGGTCA
CGGGTTTCTGAAGGAAGCGGAAGCCGGCATGCCGGTCAAGGAACTGTGCAGGAGGCACGGGTTCAGTGACGCGTCGTTCTACACGTGGCGCGCAAAGTTC
GGCGGCATGGAAGTCTCGGAAGCCCGCCGGCTCAAGGACCTCGAGGTGGAGAATGCCCGGCTGAAGAAACTGCTGGCCGAAGCAATGCTCGACATGGAAG
CGTTGAAGGTCGTCGTCAAGGGAAAGCCCTGAGCCCGCAAGCCAAACGCGAAGCAGTGTCGGCGATTCGGGAGAAGGTCAACATCTCCGAGCGCCGCGCC
TGCCGGCTTGTCGGGCTATCTCGCAGCGTGCTGCATTACGACAAGCGCATCTATTGCCTGTACCGTGAGGCAGGGCTGGCTGTGCGGCGCCGTCGCAAGC
GCCAGGGCGTCATGATTGAGCGCGAGCAACTGGCATTGCCGGGCGCGCCCAACGAGGTGTGGTCAATCGATTTCGTGATGGACGCGCTTTCCAACGGCCG
GCGCGTGAAGTGCCTGACCGTCGTCGACGACTTCACGAAAGAGGCTGTCGACATCGTCGTCGACCATGGCATCTCAGGTTTGTATGTCGCTCGGGCATTG
GACCGTGCAGCTCGCTTCCGTGGCTATCCCAAGGCAGTGCGAACAGACCAGGGCCCCGAATTTACGAGCCGCGCGCTTGACCAGTGGGCGTATGCGAACG
GCGTCACACTGAAGTTGATTCAGGCGGGCAAGCCAACGCAGAATGCGTACATCGAATCGTTCAACGGCAAGTTCCGCGACGAATGCCTTAATGAGCACTG
GTTCACGACGCTCGCGCACGCTCGGGCTGTCATCGCGGCATGGCGTCAGGACTACAACGAGCAAAGGCCGCACAGCGCACTGAACTACCTTGCGCCGTCA
GAGTTTGCGGCGAAACATCGGGCAACCGCGGATGCTCCTGCCGCTTTCCAGGAGTTGGTTTAAAGGGACTTTGCTAGAAGCCCATTGGCCCTATTGAAGG
GGGCAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
264 bp | 87 aa | 69 | 332 | + | No |
Description : First part of the transposase
ORF sequence :
MKKRFTEQQIIGFLKEAEAGMPVKELCRRHGFSDASFYTWRAKFGGMEVSEARRLKDLEVENARLKKLLAEAMLDMEALKVVVKGKP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 170 | 1063 | + | No |
Description : Second part of the transposase
ORF sequence :
RVVLHVARKVRRHGSLGSPPAQGPRGGECPAEETAGRSNARHGSVEGRRQGKALSPQAKREAVSAIREKVNISERRACRLVGLSRSVLHYDKRIYCLYRE
AGLAVRRRRKRQGVMIEREQLALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRAARFRGYPKAVRTDQGPEFTS
RALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQELV
AGLAVRRRRKRQGVMIEREQLALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARALDRAARFRGYPKAVRTDQGPEFTS
RALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEFAAKHRATADAPAAFQELV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
995 bp | 330 aa | 69 | 1063 | + | Yes |
Chemistry : DDE
ORF sequence :
KKRFTEQQIIGFLKEAEAGMPVKELCRRHGFSDASFYTWRAKFGGMEVSEARRLKDLEVENARLKKLLAEAMLDMEALKVVVKGKALSPQAKREAVSAIR
EKVNISERRACRLVGLSRSVLHYDKRIYCLYREAGLAVRRRRKRQGVMIEREQLALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHG
ISGLYVARALDRAARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAVIAAWRQDYNEQRP
HSALNYLAPSEFAAKHRATADAPAAFQELV
EKVNISERRACRLVGLSRSVLHYDKRIYCLYREAGLAVRRRRKRQGVMIEREQLALPGAPNEVWSIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHG
ISGLYVARALDRAARFRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDECLNEHWFTTLAHARAVIAAWRQDYNEQRP
HSALNYLAPSEFAAKHRATADAPAAFQELV
Blast result :
Comments
ISBam2 is 100% (ORFA) and 85% (ORFB) aa similar to IS407.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.