ISLysp1
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVU01000021 | ND | Lyngbya sp. | Lyngbya sp. PCC 8106 |
DNA section
IS Length : 981 bp
Ends
IR Length : 22/24
IRL : GGTAGTAATAAATATATAGTGATAAGCAGTATTAACTAGAAGTATCTTTG
IRR : GGTAGTGATAAATATGTAGTGATACTAAAATTGAGATGCGATCGCTGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAAGGGGTA | AAGGAAAC | ATATATAGGACTTAC | 8 |
DNA sequence
GGTAGTAATAAATATATAGTGATAAGCAGTATTAACTAGAAGTATCTTTGATATTGTTGTACCTTTTCTTGAAGAATCGAGCCGTCAGGAATCGTTTGAT
TAACAATGCGATCGCCAGTAAGACCAACAATAAAGTCTTTGAAAAAACTGGTAAAATATAAATCGGTTGGGAGTCATTCATCCCTAGCCTGAGACTTGAT
AAACTGAAGACTCACAAAAAATTAAAGCCATGAATAATTCTGCCTTAACTTGTCCCCAATGTCAAAGCCAGAAAATCGTAAAAAATGGTAGCATTCATAA
CAAAAAGCCCAAATACAAATGCACCGAATGTGGAAGGCAATTTGTCGAACATCCTCGCAAAATTTATATTTCTGAAGACACCAAAAATTTGATCGAGAAA
CTCTTGTTAGAAAAAATTAGCTTGGCTGGAATAGCTAGAGTAACAGGAGTTTCACGAAAATGGTTGCAAGATTATATTAATGCCAAGTATAAAGAGGTTT
CCCGGGAAATTAATGTCTCAAAAAAAAACGAGGAAAGCTGACCATTCAAGCCGATGAAATGTGGTCATTTGTCGGGAACAAAAAACAGAAGCAATGGCTG
TGGTTGGCTGTAGATAGAAACACCAAGGAAATTGTTGGTTTTGATTTGGGCGATTGTAGTGAAGAAGGAGCAAAAGGGCTGTGGCGATCACTTCCTAAAG
TGTATCGTCAATGTGCAGTGTGTTATACGGATTTTTGGTCGGCTTATGAACATATTTTTCCTAATAAAAGACACAAATCTGTCGGAAAAGAAACTGGGTT
GACTAATCATATTGAGCGATTGAACAATACTCTTCGTCAACGAGTTTCTCGACTGGTTAGAAAGACTTTATCTTTCTCGAAAAAATTGGAAAATCATATC
GATGCCATTTGGAATTTTATTCACTACTACAATTCAGCGATCGCATCTCAATTTTAGTATCACTACATATTTATCACTACC
TAACAATGCGATCGCCAGTAAGACCAACAATAAAGTCTTTGAAAAAACTGGTAAAATATAAATCGGTTGGGAGTCATTCATCCCTAGCCTGAGACTTGAT
AAACTGAAGACTCACAAAAAATTAAAGCCATGAATAATTCTGCCTTAACTTGTCCCCAATGTCAAAGCCAGAAAATCGTAAAAAATGGTAGCATTCATAA
CAAAAAGCCCAAATACAAATGCACCGAATGTGGAAGGCAATTTGTCGAACATCCTCGCAAAATTTATATTTCTGAAGACACCAAAAATTTGATCGAGAAA
CTCTTGTTAGAAAAAATTAGCTTGGCTGGAATAGCTAGAGTAACAGGAGTTTCACGAAAATGGTTGCAAGATTATATTAATGCCAAGTATAAAGAGGTTT
CCCGGGAAATTAATGTCTCAAAAAAAAACGAGGAAAGCTGACCATTCAAGCCGATGAAATGTGGTCATTTGTCGGGAACAAAAAACAGAAGCAATGGCTG
TGGTTGGCTGTAGATAGAAACACCAAGGAAATTGTTGGTTTTGATTTGGGCGATTGTAGTGAAGAAGGAGCAAAAGGGCTGTGGCGATCACTTCCTAAAG
TGTATCGTCAATGTGCAGTGTGTTATACGGATTTTTGGTCGGCTTATGAACATATTTTTCCTAATAAAAGACACAAATCTGTCGGAAAAGAAACTGGGTT
GACTAATCATATTGAGCGATTGAACAATACTCTTCGTCAACGAGTTTCTCGACTGGTTAGAAAGACTTTATCTTTCTCGAAAAAATTGGAAAATCATATC
GATGCCATTTGGAATTTTATTCACTACTACAATTCAGCGATCGCATCTCAATTTTAGTATCACTACATATTTATCACTACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
311 bp | 103 aa | 230 | 540 | + | No |
Description : First part of the transposase
ORF sequence :
MNNSALTCPQCQSQKIVKNGSIHNKKPKYKCTECGRQFVEHPRKIYISEDTKNLIEKLLLEKISLAGIARVTGVSRKWLQDYINAKYKEVSREINVSKKN
EES
EES
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
445 bp | 147 aa | 513 | 957 | + | No |
Description : Second part of the transposase
ORF sequence :
CLKKKRGKLTIQADEMWSFVGNKKQKQWLWLAVDRNTKEIVGFDLGDCSEEGAKGLWRSLPKVYRQCAVCYTDFWSAYEHIFPNKRHKSVGKETGLTNHI
ERLNNTLRQRVSRLVRKTLSFSKKLENHIDAIWNFIHYYNSAIASQF
ERLNNTLRQRVSRLVRKTLSFSKKLENHIDAIWNFIHYYNSAIASQF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
728 bp | 242 aa | 230 | 957 | + | Yes |
Chemistry : DDE
ORF sequence :
MNNSALTCPQCQSQKIVKNGSIHNKKPKYKCTECGRQFVEHPRKIYISEDTKNLIEKLLLEKISLAGIARVTGVSRKWLQDYINAKYKEVSREINVSKKK
RGKLTIQADEMWSFVGNKKQKQWLWLAVDRNTKEIVGFDLGDCSEEGAKGLWRSLPKVYRQCAVCYTDFWSAYEHIFPNKRHKSVGKETGLTNHIERLNN
TLRQRVSRLVRKTLSFSKKLENHIDAIWNFIHYYNSAIASQF
RGKLTIQADEMWSFVGNKKQKQWLWLAVDRNTKEIVGFDLGDCSEEGAKGLWRSLPKVYRQCAVCYTDFWSAYEHIFPNKRHKSVGKETGLTNHIERLNN
TLRQRVSRLVRKTLSFSKKLENHIDAIWNFIHYYNSAIASQF
Blast result :
Comments
ISLysp1 is 66% (ORF A) and 57% (ORF B) aa similar to ISCysp1. The third ORF is a putative ORF AB transposase reconstructed in silico by possible -1 frameshift.
References
1] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C (2006) Direct submission GenBank.