ISGpr3
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVT01000002.1 | ND | Marine gamma | Marine gamma proteobacterium HTCC2143 |
DNA section
IS Length : 1230 bp
Ends
IR Length : 29/36
IRL : TGGACTTCCCAGTGTTTGCTAGACACTTAATAGCGTTAAAATGTAACTCT
IRR : TGGACTTCCCAGACTTTACTAGACGCTTCCTAGCTTCTTAAAATAGTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGAGGTTCT | GTC | TTCTTATAAT | 3 |
DNA sequence
TGGACTTCCCAGTGTTTGCTAGACACTTAATAGCGTTAAAATGTAACTCTATGAGAGGTGTTTATGAGCAAAGGCAAACGTTACCCAGAAGAATTTAAAC
TTGAAGCTGTTAAGCAGGTTAGTGAGCGAGGTTACTCCGTCATGGAGGTGGCTACACGGCTCGATATTTCAACGAAGACGCTCTATCACTGGGTCGCTCA
ATTCGGCGAGCAATCGCCCAGGATGAAAGACCAGGCCACTGAGCAGGCCGAGATAGCTCGGCTTAAGTCCGAGCTTAAACGTGTCACTGAAGAGCGCGAT
ATTTTAAAAAAGGCCGCCGCGTACTTTGCCAACGACCACCTGTGAAGTACGCTTTTATCCGTGATCACCGCACTGTGTTTTCGGTGAGGGCTATGTGCCG
AATTCTCAGTGTTCATTTCAGCGGGTTTTATGCTTGGCTGGAGAAACCCCTGTCGAATCGAGCAATTGAAGACCGGCGCTTACTGAAGCTGATCAAAGAA
TTTTATGTCGCCAGTGGAGCTACCTATGGCAGCCCATGGATACACAGAGATATGCGAGAAGCGGGTGAAACATGTAGCGTTCACCGAGTTGCACGGTTGA
TGCGGGAGAACAAATTAAGAGCGCAGATAGGCTACAAGCGACGTTATACCAAAGGTGGTAAGTTGGCGACAGTCGCCGCCAACCACCTAGACCGTAACTT
TAACCCTGACACCCCTAATCGATTTTGGGTGAGCGATATAACGTATGTGCGCACCTACGAAGGCTTCCTTTATGTCGCCACGGTATTAGATTTGTTTTCA
CGCCGCATTGTTGGTTGGTCAATGGATAAAAACATGGACCGCCACTTAGTGATCAGGGCGCTCTTAATGGCCGTATGGAAACGTCAGCCAAAAGAAACCG
TATTGGTTCACAGCGACCAAGGCAGCCAGTACGGCAGTTCTGATTATTTAGCTTTTATGAAAGAGAATAACTTACAGCCATCGATGAGTCGTCGCGGTAA
CTGTCACGATAATGCTGTAGCGGAAAGTTTTTGCAACGTTTAAAAAGCGAGTCACTCAGAGAAAGATATACCAGACACGAGAGGAAGCGAAGGGAGAGAT
ATTTAATTTTATTGAGATGTTCTACAATCCAGTAAAGCGTCACACTCACACAGGCGGTGTGTCACCCGCTAAATTTGAAGAAGACTATTTTAAGAAGCTA
GGAAGCGTCTAGTAAAGTCTGGGAAGTCCA
TTGAAGCTGTTAAGCAGGTTAGTGAGCGAGGTTACTCCGTCATGGAGGTGGCTACACGGCTCGATATTTCAACGAAGACGCTCTATCACTGGGTCGCTCA
ATTCGGCGAGCAATCGCCCAGGATGAAAGACCAGGCCACTGAGCAGGCCGAGATAGCTCGGCTTAAGTCCGAGCTTAAACGTGTCACTGAAGAGCGCGAT
ATTTTAAAAAAGGCCGCCGCGTACTTTGCCAACGACCACCTGTGAAGTACGCTTTTATCCGTGATCACCGCACTGTGTTTTCGGTGAGGGCTATGTGCCG
AATTCTCAGTGTTCATTTCAGCGGGTTTTATGCTTGGCTGGAGAAACCCCTGTCGAATCGAGCAATTGAAGACCGGCGCTTACTGAAGCTGATCAAAGAA
TTTTATGTCGCCAGTGGAGCTACCTATGGCAGCCCATGGATACACAGAGATATGCGAGAAGCGGGTGAAACATGTAGCGTTCACCGAGTTGCACGGTTGA
TGCGGGAGAACAAATTAAGAGCGCAGATAGGCTACAAGCGACGTTATACCAAAGGTGGTAAGTTGGCGACAGTCGCCGCCAACCACCTAGACCGTAACTT
TAACCCTGACACCCCTAATCGATTTTGGGTGAGCGATATAACGTATGTGCGCACCTACGAAGGCTTCCTTTATGTCGCCACGGTATTAGATTTGTTTTCA
CGCCGCATTGTTGGTTGGTCAATGGATAAAAACATGGACCGCCACTTAGTGATCAGGGCGCTCTTAATGGCCGTATGGAAACGTCAGCCAAAAGAAACCG
TATTGGTTCACAGCGACCAAGGCAGCCAGTACGGCAGTTCTGATTATTTAGCTTTTATGAAAGAGAATAACTTACAGCCATCGATGAGTCGTCGCGGTAA
CTGTCACGATAATGCTGTAGCGGAAAGTTTTTGCAACGTTTAAAAAGCGAGTCACTCAGAGAAAGATATACCAGACACGAGAGGAAGCGAAGGGAGAGAT
ATTTAATTTTATTGAGATGTTCTACAATCCAGTAAAGCGTCACACTCACACAGGCGGTGTGTCACCCGCTAAATTTGAAGAAGACTATTTTAAGAAGCTA
GGAAGCGTCTAGTAAAGTCTGGGAAGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
282 bp | 93 aa | 64 | 345 | + | No |
Description : First part of the transposase
ORF sequence :
MSKGKRYPEEFKLEAVKQVSERGYSVMEVATRLDISTKTLYHWVAQFGEQSPRMKDQATEQAEIARLKSELKRVTEERDILKKAAAYFANDHL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 291 | 1043 | + | No |
Description : Second part of the transposase
ORF sequence :
RARYFKKGRRVLCQRPPVKYAFIRDHRTVFSVRAMCRILSVHFSGFYAWLEKPLSNRAIEDRRLLKLIKEFYVASGATYGSPWIHRDMREAGETCSVHRV
ARLMRENKLRAQIGYKRRYTKGGKLATVAANHLDRNFNPDTPNRFWVSDITYVRTYEGFLYVATVLDLFSRRIVGWSMDKNMDRHLVIRALLMAVWKRQP
KETVLVHSDQGSQYGSSDYLAFMKENNLQPSMSRRGNCHDNAVAESFCNV
ARLMRENKLRAQIGYKRRYTKGGKLATVAANHLDRNFNPDTPNRFWVSDITYVRTYEGFLYVATVLDLFSRRIVGWSMDKNMDRHLVIRALLMAVWKRQP
KETVLVHSDQGSQYGSSDYLAFMKENNLQPSMSRRGNCHDNAVAESFCNV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
980 bp | 326 aa | 64 | 1043 | + | Yes |
Chemistry : DDE
ORF sequence :
MSKGKRYPEEFKLEAVKQVSERGYSVMEVATRLDISTKTLYHWVAQFGEQSPRMKDQATEQAEIARLKSELKRVTEERDILKKGRRVLCQRPPVKYAFIR
DHRTVFSVRAMCRILSVHFSGFYAWLEKPLSNRAIEDRRLLKLIKEFYVASGATYGSPWIHRDMREAGETCSVHRVARLMRENKLRAQIGYKRRYTKGGK
LATVAANHLDRNFNPDTPNRFWVSDITYVRTYEGFLYVATVLDLFSRRIVGWSMDKNMDRHLVIRALLMAVWKRQPKETVLVHSDQGSQYGSSDYLAFMK
ENNLQPSMSRRGNCHDNAVAESFCNV
DHRTVFSVRAMCRILSVHFSGFYAWLEKPLSNRAIEDRRLLKLIKEFYVASGATYGSPWIHRDMREAGETCSVHRVARLMRENKLRAQIGYKRRYTKGGK
LATVAANHLDRNFNPDTPNRFWVSDITYVRTYEGFLYVATVLDLFSRRIVGWSMDKNMDRHLVIRALLMAVWKRQPKETVLVHSDQGSQYGSSDYLAFMK
ENNLQPSMSRRGNCHDNAVAESFCNV
Blast result :
Comments
Genome in progress.
ISGpr3 is 82 % (ORFA) aa similar to ISEhe3 and 73% (ORFB) aa similar to ISPsy29. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISGpr3 is 82 % (ORFA) aa similar to ISEhe3 and 73% (ORFB) aa similar to ISPsy29. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank.