ISRhba2
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Rhodobacterales bacterium | Rhodobacterales bacterium HTCC2150 |
DNA section
IS Length : 1231 bp
Ends
IR Length : 25/29
IRL : TGGACCTGTCACGGTTTGATGCCGCTCCTTTGATAGCATTTACTGCAGCA
IRR : TGGACCTGTCGCGCTTTTGTGCCGCCCCCGGTGCTCGTTTAAGCCACCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCTGATAG | ATGCGGCGAC | 0 |
DNA sequence
TGGACCTGTCACGGTTTGATGCCGCTCCTTTGATAGCATTTACTGCAGCAAAGGAGACTGACTATGGTACTGAAACGGACGGACGAATTCCGCCAAGATG
CAGTGCGGATCGCGCTGACCAGTGGGCTGACGCGCAAGCAGGTGGCGGACGATCTTGGCGTCGGCATGTCGACACTGAACAAATGGATCACGGCGCATCG
AGACACGGATTTGGTGTCAAAAGAGGATTTAAGCCTCGCCCAAGAGAATGACCGGCTTCGACGTGAGAACCGCATTCTCAAGGAGGAAAGGGAAGTGTTA
AAAAAGGCCACGGTGTTCTTTGCGAGCCAAAAGCCATGAGGTTTAAGTTTATCGAAGAACACCGATCTGCATTTTCCATTGAACTGATGTGTCGGGTCAT
GGCTGTCAGTCCGCGCGGTTTGCGGGCGTATCGCAGCCGACCTGCCAGCCGCAGACAGCGGTCTGATATGGTGACGTTGGCGCACATTAAAGAACAATCG
CGCCTGAGCTTGGGCAGCTATGGCCGCCCACGCATGACAGAAGAGCTGAAAGAGATTGGCCTTGATATTGGTCACCGCCGTGTTGGGCGTTTGATGCGCC
AGAATGGCATATCAGTGATCAGAACACGCAAACATAAGGTGACGACAGACAGCAATCATAAGTTCAACATCTCGCCGAACCTACTGGAGCGTGACTTCAA
CGCAGATGCGCCAAATCAGAAGTGGGTTGGTGACATTACCTATATCTGGACGCGTGAGGGCTGGTTGTATCTGGCCGTGATCCTCGATCTTCATTCACGG
CGTGTGATCGGCTGGGCGGTGAGCAATCGGATGAAACGAGACCTGGCAATCAGGGCGTTGAAAATGGCTATCGCGTTCCGCGCACCTGCAAAAGGCTGCA
TCCATCACACTGACCGTGGCAGCCAATATTGCTCACACGATTACCAAAAGATCCTGCGCCAGCATGGCTTCAAAGTATCCATGTCTGGCAAAGGCAATTG
CTATGATAATGCCGCCGTCGAAACCTTCTTCAAAACCATCAAGGCGGAATTGATCTGGCGCGATAACTGGGAAACCCGCAGGAAGGCTGAGATGGCGATC
TTCGAATACATCAACGGCTTCTACAATCCACGACGACGCCATTCAGCATTAGGCTGGAAAAGCCCTGTCGCATTCGAACGAAAGGTGGCTTAAACGAGCA
CCGGGGGCGGCACAAAAGCGCGACAGGTCCA
CAGTGCGGATCGCGCTGACCAGTGGGCTGACGCGCAAGCAGGTGGCGGACGATCTTGGCGTCGGCATGTCGACACTGAACAAATGGATCACGGCGCATCG
AGACACGGATTTGGTGTCAAAAGAGGATTTAAGCCTCGCCCAAGAGAATGACCGGCTTCGACGTGAGAACCGCATTCTCAAGGAGGAAAGGGAAGTGTTA
AAAAAGGCCACGGTGTTCTTTGCGAGCCAAAAGCCATGAGGTTTAAGTTTATCGAAGAACACCGATCTGCATTTTCCATTGAACTGATGTGTCGGGTCAT
GGCTGTCAGTCCGCGCGGTTTGCGGGCGTATCGCAGCCGACCTGCCAGCCGCAGACAGCGGTCTGATATGGTGACGTTGGCGCACATTAAAGAACAATCG
CGCCTGAGCTTGGGCAGCTATGGCCGCCCACGCATGACAGAAGAGCTGAAAGAGATTGGCCTTGATATTGGTCACCGCCGTGTTGGGCGTTTGATGCGCC
AGAATGGCATATCAGTGATCAGAACACGCAAACATAAGGTGACGACAGACAGCAATCATAAGTTCAACATCTCGCCGAACCTACTGGAGCGTGACTTCAA
CGCAGATGCGCCAAATCAGAAGTGGGTTGGTGACATTACCTATATCTGGACGCGTGAGGGCTGGTTGTATCTGGCCGTGATCCTCGATCTTCATTCACGG
CGTGTGATCGGCTGGGCGGTGAGCAATCGGATGAAACGAGACCTGGCAATCAGGGCGTTGAAAATGGCTATCGCGTTCCGCGCACCTGCAAAAGGCTGCA
TCCATCACACTGACCGTGGCAGCCAATATTGCTCACACGATTACCAAAAGATCCTGCGCCAGCATGGCTTCAAAGTATCCATGTCTGGCAAAGGCAATTG
CTATGATAATGCCGCCGTCGAAACCTTCTTCAAAACCATCAAGGCGGAATTGATCTGGCGCGATAACTGGGAAACCCGCAGGAAGGCTGAGATGGCGATC
TTCGAATACATCAACGGCTTCTACAATCCACGACGACGCCATTCAGCATTAGGCTGGAAAAGCCCTGTCGCATTCGAACGAAAGGTGGCTTAAACGAGCA
CCGGGGGCGGCACAAAAGCGCGACAGGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
276 bp | 91 aa | 64 | 339 | + | No |
Description : First part of the transposase
ORF sequence :
MVLKRTDEFRQDAVRIALTSGLTRKQVADDLGVGMSTLNKWITAHRDTDLVSKEDLSLAQENDRLRRENRILKEEREVLKKATVFFASQKP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
927 bp | 308 aa | 267 | 1193 | + | No |
Description : Second part of the transposase
ORF sequence :
EPHSQGGKGSVKKGHGVLCEPKAMRFKFIEEHRSAFSIELMCRVMAVSPRGLRAYRSRPASRRQRSDMVTLAHIKEQSRLSLGSYGRPRMTEELKEIGLD
IGHRRVGRLMRQNGISVIRTRKHKVTTDSNHKFNISPNLLERDFNADAPNQKWVGDITYIWTREGWLYLAVILDLHSRRVIGWAVSNRMKRDLAIRALKM
AIAFRAPAKGCIHHTDRGSQYCSHDYQKILRQHGFKVSMSGKGNCYDNAAVETFFKTIKAELIWRDNWETRRKAEMAIFEYINGFYNPRRRHSALGWKSP
VAFERKVA
IGHRRVGRLMRQNGISVIRTRKHKVTTDSNHKFNISPNLLERDFNADAPNQKWVGDITYIWTREGWLYLAVILDLHSRRVIGWAVSNRMKRDLAIRALKM
AIAFRAPAKGCIHHTDRGSQYCSHDYQKILRQHGFKVSMSGKGNCYDNAAVETFFKTIKAELIWRDNWETRRKAEMAIFEYINGFYNPRRRHSALGWKSP
VAFERKVA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1130 bp | 376 aa | 64 | 1193 | + | Yes |
Chemistry : DDE
ORF sequence :
MVLKRTDEFRQDAVRIALTSGLTRKQVADDLGVGMSTLNKWITAHRDTDLVSKEDLSLAQENDRLRRENRILKEEREVLKKGHGVLCEPKAMRFKFIEEH
RSAFSIELMCRVMAVSPRGLRAYRSRPASRRQRSDMVTLAHIKEQSRLSLGSYGRPRMTEELKEIGLDIGHRRVGRLMRQNGISVIRTRKHKVTTDSNHK
FNISPNLLERDFNADAPNQKWVGDITYIWTREGWLYLAVILDLHSRRVIGWAVSNRMKRDLAIRALKMAIAFRAPAKGCIHHTDRGSQYCSHDYQKILRQ
HGFKVSMSGKGNCYDNAAVETFFKTIKAELIWRDNWETRRKAEMAIFEYINGFYNPRRRHSALGWKSPVAFERKVA
RSAFSIELMCRVMAVSPRGLRAYRSRPASRRQRSDMVTLAHIKEQSRLSLGSYGRPRMTEELKEIGLDIGHRRVGRLMRQNGISVIRTRKHKVTTDSNHK
FNISPNLLERDFNADAPNQKWVGDITYIWTREGWLYLAVILDLHSRRVIGWAVSNRMKRDLAIRALKMAIAFRAPAKGCIHHTDRGSQYCSHDYQKILRQ
HGFKVSMSGKGNCYDNAAVETFFKTIKAELIWRDNWETRRKAEMAIFEYINGFYNPRRRHSALGWKSPVAFERKVA
Blast result :
Comments
ISRhba2 is 95% (ORFA) and 93% (ORFB) aa similar to ISRosp1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Giovannoni,S., Vergin,K., Ferriera,S., Johnson,J., Kravitz,S.,Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. andVenter,J.C. (2006) Direct submission GenBank.