ISNmu1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007614 | ND | Nitrosospira multiformis | Nitrosospira multiformis ATCC 25196 |
DNA section
IS Length : 1221 bp
Ends
IR Length : 21/25
IRL : GGGTTTTCCCCCGATTTCACGGACACATCTAAAAAGGCTGATAATGAGTC
IRR : GGGTTTTACCCCATTTCTCCGGACGGTTTGGTTAAGCCTAAATCCTGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGAAGAGCA | CA | GCAAAAGGCG | 2 |
DNA sequence
GGGTTTTCCCCCGATTTCACGGACACATCTAAAAAGGCTGATAATGAGTCAGGAGGTGTGTCATGGCAACGCGAAGGAAATATGCAGCGGAGTTCAAGCA
GGAAGCGGTACAACTAGTTCGGTCTGGCAATGTGCCGGCAAGCCGGATCGCGCGTGATCTGGGGATTGATCCCAATATGCTGAGCCGGTGGTGCCGGGAA
ATGGGCTCGGTCGGTAATAAAGCCTTTCAGGGTCAGGGCAGGCCCCGTGATGAGGAGATGGCTGCGCTCAAACGTGAGCTGATCCAAGTTAGGAAGGAGC
GTGATTTTTTAAAAGAAGCGGCGGCGTTATTCGCGAAAGCGTCGAAATGAGATATCGCATGATCGAACGCTGCCGCGATGCCTTCCCCATTCGCCTGATG
TGTCGTTGTCTGCATGTATCAACCAGCGGCTACTATGATTGGCGAGATCGCCCCTTGAGTCAGAGAGCGCATGATGACCGGCGTTTGCTGGAGCGCATCA
GGAAGATTCATGATGGCAGCGATGGGGTGATGGGCAGTCCTCGAGTCTGGAAGGAGTTGCGTTATGAAGGCGAGGCGTGTGGGTTGAACCGCATAGCACG
GCTGATGCGCCAGCAGAGGTTGTATGGCATCCCGCAGCGTAAACGCTGGCACAAGAAGGTCTGTGGCCTTCGACCGGAGAATGTGCACAATCACTTGCAG
CGGGACTTTACAGCAAGTGAGCCCAACAGCCGGTGGGTGACGGACATAACCTATGTGCGCACTCAGGAAAGCTGGCTTTATCTGTGCGTGGTCGTGGACC
TGTACTCGGGCATCGTGGTCGGCTGGTCAATGAGCCACTGCCAGGATCCGCAACTGGTGCTGCAGGCCGTACTCATGGCGCTTTGGCAGCGTGAGGCAAA
AACTCCCGTCATCCTGCACTCAGATCGCGGCTGTCAGTTTACCAGTGACGAGTATCAACGCTTCCTGCAAGGACACAATCTGATTTGCAGCATGAGCGCT
GTCGGTAGTTGTGCCGACAACGCGCTAGCAGAGAGCTTCTTTGGCTTGCTCAAGCGGGAGCGAGTATATCGTCGCCAGTATCGAACCCGGGCTGAGGCGC
GCACAGATATCTTCGACTATATCGAGCGATTCCATAATCCGCGAAAACGGCGACAGCTGGAAATGCGTCAGAAGCAGGATTTAGGCTTAACCAAACCGTC
CGGAGAAATGGGGTAAAACCC
GGAAGCGGTACAACTAGTTCGGTCTGGCAATGTGCCGGCAAGCCGGATCGCGCGTGATCTGGGGATTGATCCCAATATGCTGAGCCGGTGGTGCCGGGAA
ATGGGCTCGGTCGGTAATAAAGCCTTTCAGGGTCAGGGCAGGCCCCGTGATGAGGAGATGGCTGCGCTCAAACGTGAGCTGATCCAAGTTAGGAAGGAGC
GTGATTTTTTAAAAGAAGCGGCGGCGTTATTCGCGAAAGCGTCGAAATGAGATATCGCATGATCGAACGCTGCCGCGATGCCTTCCCCATTCGCCTGATG
TGTCGTTGTCTGCATGTATCAACCAGCGGCTACTATGATTGGCGAGATCGCCCCTTGAGTCAGAGAGCGCATGATGACCGGCGTTTGCTGGAGCGCATCA
GGAAGATTCATGATGGCAGCGATGGGGTGATGGGCAGTCCTCGAGTCTGGAAGGAGTTGCGTTATGAAGGCGAGGCGTGTGGGTTGAACCGCATAGCACG
GCTGATGCGCCAGCAGAGGTTGTATGGCATCCCGCAGCGTAAACGCTGGCACAAGAAGGTCTGTGGCCTTCGACCGGAGAATGTGCACAATCACTTGCAG
CGGGACTTTACAGCAAGTGAGCCCAACAGCCGGTGGGTGACGGACATAACCTATGTGCGCACTCAGGAAAGCTGGCTTTATCTGTGCGTGGTCGTGGACC
TGTACTCGGGCATCGTGGTCGGCTGGTCAATGAGCCACTGCCAGGATCCGCAACTGGTGCTGCAGGCCGTACTCATGGCGCTTTGGCAGCGTGAGGCAAA
AACTCCCGTCATCCTGCACTCAGATCGCGGCTGTCAGTTTACCAGTGACGAGTATCAACGCTTCCTGCAAGGACACAATCTGATTTGCAGCATGAGCGCT
GTCGGTAGTTGTGCCGACAACGCGCTAGCAGAGAGCTTCTTTGGCTTGCTCAAGCGGGAGCGAGTATATCGTCGCCAGTATCGAACCCGGGCTGAGGCGC
GCACAGATATCTTCGACTATATCGAGCGATTCCATAATCCGCGAAAACGGCGACAGCTGGAAATGCGTCAGAAGCAGGATTTAGGCTTAACCAAACCGTC
CGGAGAAATGGGGTAAAACCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
288 bp | 95 aa | 63 | 350 | + | No |
Description : First part of the transposase
ORF sequence :
MATRRKYAAEFKQEAVQLVRSGNVPASRIARDLGIDPNMLSRWCREMGSVGNKAFQGQGRPRDEEMAALKRELIQVRKERDFLKEAAALFAKASK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
912 bp | 303 aa | 305 | 1216 | + | No |
Description : Second part of the transposase
ORF sequence :
FFKRSGGVIRESVEMRYRMIERCRDAFPIRLMCRCLHVSTSGYYDWRDRPLSQRAHDDRRLLERIRKIHDGSDGVMGSPRVWKELRYEGEACGLNRIARL
MRQQRLYGIPQRKRWHKKVCGLRPENVHNHLQRDFTASEPNSRWVTDITYVRTQESWLYLCVVVDLYSGIVVGWSMSHCQDPQLVLQAVLMALWQREAKT
PVILHSDRGCQFTSDEYQRFLQGHNLICSMSAVGSCADNALAESFFGLLKRERVYRRQYRTRAEARTDIFDYIERFHNPRKRRQLEMRQKQDLGLTKPSG
EMG
MRQQRLYGIPQRKRWHKKVCGLRPENVHNHLQRDFTASEPNSRWVTDITYVRTQESWLYLCVVVDLYSGIVVGWSMSHCQDPQLVLQAVLMALWQREAKT
PVILHSDRGCQFTSDEYQRFLQGHNLICSMSAVGSCADNALAESFFGLLKRERVYRRQYRTRAEARTDIFDYIERFHNPRKRRQLEMRQKQDLGLTKPSG
EMG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1154 bp | 384 aa | 63 | 1216 | + | Yes |
Chemistry : DDE
ORF sequence :
MATRRKYAAEFKQEAVQLVRSGNVPASRIARDLGIDPNMLSRWCREMGSVGNKAFQGQGRPRDEEMAALKRELIQVRKERDFFKRSGGVIRESVEMRYRM
IERCRDAFPIRLMCRCLHVSTSGYYDWRDRPLSQRAHDDRRLLERIRKIHDGSDGVMGSPRVWKELRYEGEACGLNRIARLMRQQRLYGIPQRKRWHKKV
CGLRPENVHNHLQRDFTASEPNSRWVTDITYVRTQESWLYLCVVVDLYSGIVVGWSMSHCQDPQLVLQAVLMALWQREAKTPVILHSDRGCQFTSDEYQR
FLQGHNLICSMSAVGSCADNALAESFFGLLKRERVYRRQYRTRAEARTDIFDYIERFHNPRKRRQLEMRQKQDLGLTKPSGEMG
IERCRDAFPIRLMCRCLHVSTSGYYDWRDRPLSQRAHDDRRLLERIRKIHDGSDGVMGSPRVWKELRYEGEACGLNRIARLMRQQRLYGIPQRKRWHKKV
CGLRPENVHNHLQRDFTASEPNSRWVTDITYVRTQESWLYLCVVVDLYSGIVVGWSMSHCQDPQLVLQAVLMALWQREAKTPVILHSDRGCQFTSDEYQR
FLQGHNLICSMSAVGSCADNALAESFFGLLKRERVYRRQYRTRAEARTDIFDYIERFHNPRKRRQLEMRQKQDLGLTKPSGEMG
Blast result :
Comments
ISNmu1 is 59 % (ORFA) aa similar to ISAma1 and 65% (ORFB) aa similar to ISAisp2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The terminal inverted repeat are not expected ends for an IS3 family members.
The terminal inverted repeat are not expected ends for an IS3 family members.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2005) Direct Submission GenBank.