ISCysp1

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXW01000016 ND Cyanothece sp.CCY0110
Cyanothece sp.CCY0110
DNA section
IS Length : 963 bp

Ends


IR Length : 22/27

IRL : GGTAGTGTTATTTAAGTAGTGAAAGTCGAATTTTTGCCTAAGTTTCTATT
IRR : GGTAGTGTATCATAAGTAGTGAAAATCAATCTAAGTTGATAGTATTTCTT

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTTTACTCTTTTTTTCAAA0

DNA sequence

GGTAGTGTTATTTAAGTAGTGAAAGTCGAATTTTTGCCTAAGTTTCTATTAGAATAAGGGAAAGAAGTGAAAAGAGTTATCAAATCTGGGATAATTATCT
ATAGTTTAGACCGAATTTTTAATAACTCAGCAAAAAAACTGATAATGGATAACGACTATTCCTTAACTTCTCGTCCACCTTGTCCCTCTTGCGGTTCAAG
ACAGATTTTGAAAAATGGAAGTACACATCATAAAAAACAGAAGTTTTTATGTAAAGAATGTGGTCGTCAGTTTATTGAAAAACCACAGAAAAAACAAATA
ACATTAAAGGAAAAGAAACGAGTTAAAAAATTACTATTAGAACGAATTTCTCTCAGAGGAATTACTCGCTCTTTAGAAATATCAATGACTTGGTTACAAA
AATTTGTTAATAGCTTATATCGCTCTGTTCCTCTTGAATTAAAGGTTAGAGAAACATCCGATTTAGAAATTGAGGTTGAATGTGATGAATTGTGGTCTTA
TGTAAACTCCAAAGAAAATCCAGTCTATATTTGGCTGGCGATCTCGAAGAGATCCGCTTCGCGGTGCGCTAGAAAAACTAGGCGAATTGTGGGATTTTAT
TTAGGCGATCGTAGTAGACTTAGTGCCAGAGAGTTTTGGAAGACGTTACCAAAAACTTATCAGGATAATGGGAAATTTTATACAGATTTATGGGAATCAT
ACTGTGATGTACTGCTTAGCGGTGCAGCCGCACTCGCGGAGCGAGACCGCCACTATCCTAGTACAAAGAAAAGTGGTGAAACAACAAGAATTGAAAGATT
AAATAATACCTTAAGGCATCGCTGCTCTCGTCTAGTCAGAAAAAACCTAGCGTTTTCTAAAAACTTTTTCAATCATGAAGGAGCAATTTTATATTTCATT
CATCATTATAATGAAGAAATACTATCAACTTAGATTGATTTTCACTACTTATGATACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
867 bp288 aa67933+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRVIKSGIIIYSLDRIFNNSAKKLIMDNDYSLTSRPPCPSCGSRQILKNGSTHHKKQKFLCKECGRQFIEKPQKKQITLKEKKRVKKLLLERISLRGIT
RSLEISMTWLQKFVNSLYRSVPLELKVRETSDLEIEVECDELWSYVNSKENPVYIWLAISKRSASRCARKTRRIVGFYLGDRSRLSAREFWKTLPKTYQD
NGKFYTDLWESYCDVLLSGAAALAERDRHYPSTKKSGETTRIERLNNTLRHRCSRLVRKNLAFSKNFFNHEGAILYFIHHYNEEILST

 

Blast result :
Comments
ISCysp1 is 54% aa similar to ISDge2.
References
1] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.