ISCysp1
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXW01000016 | ND | Cyanothece sp.CCY0110 | Cyanothece sp.CCY0110 |
DNA section
IS Length : 963 bp
Ends
IR Length : 22/27
IRL : GGTAGTGTTATTTAAGTAGTGAAAGTCGAATTTTTGCCTAAGTTTCTATT
IRR : GGTAGTGTATCATAAGTAGTGAAAATCAATCTAAGTTGATAGTATTTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTTTACT | CTTTTTTTCAAA | 0 |
DNA sequence
GGTAGTGTTATTTAAGTAGTGAAAGTCGAATTTTTGCCTAAGTTTCTATTAGAATAAGGGAAAGAAGTGAAAAGAGTTATCAAATCTGGGATAATTATCT
ATAGTTTAGACCGAATTTTTAATAACTCAGCAAAAAAACTGATAATGGATAACGACTATTCCTTAACTTCTCGTCCACCTTGTCCCTCTTGCGGTTCAAG
ACAGATTTTGAAAAATGGAAGTACACATCATAAAAAACAGAAGTTTTTATGTAAAGAATGTGGTCGTCAGTTTATTGAAAAACCACAGAAAAAACAAATA
ACATTAAAGGAAAAGAAACGAGTTAAAAAATTACTATTAGAACGAATTTCTCTCAGAGGAATTACTCGCTCTTTAGAAATATCAATGACTTGGTTACAAA
AATTTGTTAATAGCTTATATCGCTCTGTTCCTCTTGAATTAAAGGTTAGAGAAACATCCGATTTAGAAATTGAGGTTGAATGTGATGAATTGTGGTCTTA
TGTAAACTCCAAAGAAAATCCAGTCTATATTTGGCTGGCGATCTCGAAGAGATCCGCTTCGCGGTGCGCTAGAAAAACTAGGCGAATTGTGGGATTTTAT
TTAGGCGATCGTAGTAGACTTAGTGCCAGAGAGTTTTGGAAGACGTTACCAAAAACTTATCAGGATAATGGGAAATTTTATACAGATTTATGGGAATCAT
ACTGTGATGTACTGCTTAGCGGTGCAGCCGCACTCGCGGAGCGAGACCGCCACTATCCTAGTACAAAGAAAAGTGGTGAAACAACAAGAATTGAAAGATT
AAATAATACCTTAAGGCATCGCTGCTCTCGTCTAGTCAGAAAAAACCTAGCGTTTTCTAAAAACTTTTTCAATCATGAAGGAGCAATTTTATATTTCATT
CATCATTATAATGAAGAAATACTATCAACTTAGATTGATTTTCACTACTTATGATACACTACC
ATAGTTTAGACCGAATTTTTAATAACTCAGCAAAAAAACTGATAATGGATAACGACTATTCCTTAACTTCTCGTCCACCTTGTCCCTCTTGCGGTTCAAG
ACAGATTTTGAAAAATGGAAGTACACATCATAAAAAACAGAAGTTTTTATGTAAAGAATGTGGTCGTCAGTTTATTGAAAAACCACAGAAAAAACAAATA
ACATTAAAGGAAAAGAAACGAGTTAAAAAATTACTATTAGAACGAATTTCTCTCAGAGGAATTACTCGCTCTTTAGAAATATCAATGACTTGGTTACAAA
AATTTGTTAATAGCTTATATCGCTCTGTTCCTCTTGAATTAAAGGTTAGAGAAACATCCGATTTAGAAATTGAGGTTGAATGTGATGAATTGTGGTCTTA
TGTAAACTCCAAAGAAAATCCAGTCTATATTTGGCTGGCGATCTCGAAGAGATCCGCTTCGCGGTGCGCTAGAAAAACTAGGCGAATTGTGGGATTTTAT
TTAGGCGATCGTAGTAGACTTAGTGCCAGAGAGTTTTGGAAGACGTTACCAAAAACTTATCAGGATAATGGGAAATTTTATACAGATTTATGGGAATCAT
ACTGTGATGTACTGCTTAGCGGTGCAGCCGCACTCGCGGAGCGAGACCGCCACTATCCTAGTACAAAGAAAAGTGGTGAAACAACAAGAATTGAAAGATT
AAATAATACCTTAAGGCATCGCTGCTCTCGTCTAGTCAGAAAAAACCTAGCGTTTTCTAAAAACTTTTTCAATCATGAAGGAGCAATTTTATATTTCATT
CATCATTATAATGAAGAAATACTATCAACTTAGATTGATTTTCACTACTTATGATACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
867 bp | 288 aa | 67 | 933 | + | No |
Chemistry : DDE
ORF sequence :
MKRVIKSGIIIYSLDRIFNNSAKKLIMDNDYSLTSRPPCPSCGSRQILKNGSTHHKKQKFLCKECGRQFIEKPQKKQITLKEKKRVKKLLLERISLRGIT
RSLEISMTWLQKFVNSLYRSVPLELKVRETSDLEIEVECDELWSYVNSKENPVYIWLAISKRSASRCARKTRRIVGFYLGDRSRLSAREFWKTLPKTYQD
NGKFYTDLWESYCDVLLSGAAALAERDRHYPSTKKSGETTRIERLNNTLRHRCSRLVRKNLAFSKNFFNHEGAILYFIHHYNEEILST
RSLEISMTWLQKFVNSLYRSVPLELKVRETSDLEIEVECDELWSYVNSKENPVYIWLAISKRSASRCARKTRRIVGFYLGDRSRLSAREFWKTLPKTYQD
NGKFYTDLWESYCDVLLSGAAALAERDRHYPSTKKSGETTRIERLNNTLRHRCSRLVRKNLAFSKNFFNHEGAILYFIHHYNEEILST
Blast result :
Comments
ISCysp1 is 54% aa similar to ISDge2.
References
1] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.