ISNwi3
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007406 | ND | Nitrobacter winogradskyi | Nitrobacter winogradskyi Nb-255 |
DNA section
IS Length : 2345 bp
Ends
IR Length : 22/24
IRL : CCTACTTATATACTTGACAAAAGTAACGGGGTTCCATAAAACGGGGTCAT
IRR : CGCACTTATATACTTGACAAAAGTGCATATATTCCTAGATTCGCGTATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGCTGTCAAGG | TATATTTT | TTTCCTAGGAATTTTT | 8 |
DNA sequence
CCTACTTATATACTTGACAAAAGTAACGGGGTTCCATAAAACGGGGTCATTGGAGCAAGCCGATGACCAAAGCCGTTTTTCAGAACCCTATGTTTCACGA
CGAGGACAAGGCCCGCGAAGCCCTTGAGGCGGTGCGCTGGCCCGATGGCGCTATCTGCCCTCATTGCGGCAACTCCGATCAAGACAAGCTCGCCAAGATC
GAAGGACAGAAGAAATCCCATCGTCCCGGCTTGTATTACTGCAACGAGTGCAAAGGTCAGTTCACCGTGACCGTTGGCACCGTGTTTGAGCGCTCCAAAG
TTCCCCTCACCAAATGGTGGATGGCGGCGCACATGATGAACTCAAACAAGAACGGCGTTTCGGCTCACGAAATACATCGCGCCCTTGGCGTCACCTACAA
GACCGCATGGTTCATGATGCACCGCCTGCGCGAAGCTATGGTCGTTTCCAGTGGAACCCCTATGGGCGGCTCTGGCAGCGCCATTCAGGCCGACGAAACA
TATTGGGGCAACACGTCCAAGCGCTCTAAGTCTTACCGAAAGGGCCTAAAACGCAAAGCTGCCATTGTGGCGCTTGTCGATGCAGAAACCGGTGAAGCTC
GCACCTTCCACGTTCGCCATGGCGTGAGCGCTTCTGAGGTTCGCGAAATCCTTGTTACCAACGTTGACCGTAAATCTACGCTCGTGACTGACGAAAGCAG
GCTCTACACCATAACCGGAGGTGAATTTGGCGACCATCAGACCATGAACCACAGCGGCCGCGAGTACGTGAACGCGGCTGGCTTCACTACAAACAACGTC
GAAAACTTCTTTGGCGTGTTCAAGCGTGGGATGCGCGGAACTTATACGTTCTGCGGCGAACAGCACTTGCAACGCTATCTGACGGAATTTCAATTCCGCT
ATAATAACCGCTCCGGCCTCGGAATTAGCGATGGGGAACGGACGGCGAAGGCCCTCAAAGGTATCGAGGGCAAGCGCCTGACGTACCGGCCGACTAACTA
AGATCGTTTATAAGAAGCAGGCCGCGAATCGATTCGCGGCTTGGAGGAGACGTCATGATAAGCGAGGCAATGGCGGGGGCTAGCGCGCTCAAGACCGCTT
TCGATATGGCGAAGGCTTTGAAGGACATCAGCGATGCTGCCATTCGCAATGGGGCGGTCATAGAGCTTCAAGAAAAGATTCTCTCCGCACAAGAGGCGCA
ATTTGCGTTGGTTAAGCGAGTAGACGACCTTGAAAAGCAAGTGGCTTCCTTTGAAGCAAAAGGAAGCCAAATGCAGCGATATCAGCTTAAAGATTACGGA
GCTGGATCGTTCGCCTACGAGCTGAAAGAATCGGAAGCCCGCGGCGAACCAATTCATCGCGCGTGTGCCGCCTGCTATCAACAGGGACATATCAGCATCC
TTCAATTTTCACATAATACCGAGGGGCAAGACTGGTACGAATGCAAGCGATGTAACAACATGCATCACTTCGGCACCCGAGTGCCGCGCACATACAGCCG
GACAAAAACCGACTACTTCTGAGTAGTCTTTGTTTTTTTTATTTTTTGCTTCCTTCCAACCTTCATATCCTCGTGCGGCTTTGGCTTCATGCGCACGAGA
GCGCTCATAAGACGCTTGGTCTCTTCCATCTCATTCTTTGAGTTTTTTGACATGCGCGACCTGGATTTTAATCCGAACAACCTACCGAAAGACGTTTTGG
AGGCTTTGGGTCTAATTACAGCATGTTCGGCCCATTCTGACTACGTCATCGAAAGTGGGATTGCTGGCTGCTTGGGGGTAAACATCGAATACGGATCAGC
GGTGACAACCCACATGACAACACCGCATCGAAAGGACGTGTTCCTTGCGGCAGCGGAGTTGAGAATCGATGATGTGCACATTCTTATTCATCTGGAAGAC
CTGCTAGATGAGTTAGTCGACGCCCTTAAGGTCAGGAACGGATATGTCCATAATTCTCCCGCGATAGATAGATCTACCAACGAGACGTTCATGATCCGCA
CTGAGGCGCGCGGGAGCGTTGATGTCTCACTAATCCCACTCTCGGTCGAAGTAATCCTGAGGGACGCGCAGCGCATCTACAAAGCTGGGATATCCCTCTA
CGGACTCTTGGATAAACTTGGCCTGCTTCCCAAAATCCCTGATGGGGTCAGGCCAAACCGCACCCACAAAGATAAGGCGGCGCGAAAGAAAATCCGAAAA
TCCCGCAGAGATCGCGGATAGCTCATTATCTTGCACTGTCCCTCACAGTGCACTTACCAACCTGACATTCCGGGCGCGCCAACCGACTTTCGAGCCGATA
CGCGAATCTAGGAATATATGCACTTTTGTCAAGTATATAAGTGCG
CGAGGACAAGGCCCGCGAAGCCCTTGAGGCGGTGCGCTGGCCCGATGGCGCTATCTGCCCTCATTGCGGCAACTCCGATCAAGACAAGCTCGCCAAGATC
GAAGGACAGAAGAAATCCCATCGTCCCGGCTTGTATTACTGCAACGAGTGCAAAGGTCAGTTCACCGTGACCGTTGGCACCGTGTTTGAGCGCTCCAAAG
TTCCCCTCACCAAATGGTGGATGGCGGCGCACATGATGAACTCAAACAAGAACGGCGTTTCGGCTCACGAAATACATCGCGCCCTTGGCGTCACCTACAA
GACCGCATGGTTCATGATGCACCGCCTGCGCGAAGCTATGGTCGTTTCCAGTGGAACCCCTATGGGCGGCTCTGGCAGCGCCATTCAGGCCGACGAAACA
TATTGGGGCAACACGTCCAAGCGCTCTAAGTCTTACCGAAAGGGCCTAAAACGCAAAGCTGCCATTGTGGCGCTTGTCGATGCAGAAACCGGTGAAGCTC
GCACCTTCCACGTTCGCCATGGCGTGAGCGCTTCTGAGGTTCGCGAAATCCTTGTTACCAACGTTGACCGTAAATCTACGCTCGTGACTGACGAAAGCAG
GCTCTACACCATAACCGGAGGTGAATTTGGCGACCATCAGACCATGAACCACAGCGGCCGCGAGTACGTGAACGCGGCTGGCTTCACTACAAACAACGTC
GAAAACTTCTTTGGCGTGTTCAAGCGTGGGATGCGCGGAACTTATACGTTCTGCGGCGAACAGCACTTGCAACGCTATCTGACGGAATTTCAATTCCGCT
ATAATAACCGCTCCGGCCTCGGAATTAGCGATGGGGAACGGACGGCGAAGGCCCTCAAAGGTATCGAGGGCAAGCGCCTGACGTACCGGCCGACTAACTA
AGATCGTTTATAAGAAGCAGGCCGCGAATCGATTCGCGGCTTGGAGGAGACGTCATGATAAGCGAGGCAATGGCGGGGGCTAGCGCGCTCAAGACCGCTT
TCGATATGGCGAAGGCTTTGAAGGACATCAGCGATGCTGCCATTCGCAATGGGGCGGTCATAGAGCTTCAAGAAAAGATTCTCTCCGCACAAGAGGCGCA
ATTTGCGTTGGTTAAGCGAGTAGACGACCTTGAAAAGCAAGTGGCTTCCTTTGAAGCAAAAGGAAGCCAAATGCAGCGATATCAGCTTAAAGATTACGGA
GCTGGATCGTTCGCCTACGAGCTGAAAGAATCGGAAGCCCGCGGCGAACCAATTCATCGCGCGTGTGCCGCCTGCTATCAACAGGGACATATCAGCATCC
TTCAATTTTCACATAATACCGAGGGGCAAGACTGGTACGAATGCAAGCGATGTAACAACATGCATCACTTCGGCACCCGAGTGCCGCGCACATACAGCCG
GACAAAAACCGACTACTTCTGAGTAGTCTTTGTTTTTTTTATTTTTTGCTTCCTTCCAACCTTCATATCCTCGTGCGGCTTTGGCTTCATGCGCACGAGA
GCGCTCATAAGACGCTTGGTCTCTTCCATCTCATTCTTTGAGTTTTTTGACATGCGCGACCTGGATTTTAATCCGAACAACCTACCGAAAGACGTTTTGG
AGGCTTTGGGTCTAATTACAGCATGTTCGGCCCATTCTGACTACGTCATCGAAAGTGGGATTGCTGGCTGCTTGGGGGTAAACATCGAATACGGATCAGC
GGTGACAACCCACATGACAACACCGCATCGAAAGGACGTGTTCCTTGCGGCAGCGGAGTTGAGAATCGATGATGTGCACATTCTTATTCATCTGGAAGAC
CTGCTAGATGAGTTAGTCGACGCCCTTAAGGTCAGGAACGGATATGTCCATAATTCTCCCGCGATAGATAGATCTACCAACGAGACGTTCATGATCCGCA
CTGAGGCGCGCGGGAGCGTTGATGTCTCACTAATCCCACTCTCGGTCGAAGTAATCCTGAGGGACGCGCAGCGCATCTACAAAGCTGGGATATCCCTCTA
CGGACTCTTGGATAAACTTGGCCTGCTTCCCAAAATCCCTGATGGGGTCAGGCCAAACCGCACCCACAAAGATAAGGCGGCGCGAAAGAAAATCCGAAAA
TCCCGCAGAGATCGCGGATAGCTCATTATCTTGCACTGTCCCTCACAGTGCACTTACCAACCTGACATTCCGGGCGCGCCAACCGACTTTCGAGCCGATA
CGCGAATCTAGGAATATATGCACTTTTGTCAAGTATATAAGTGCG
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 63 | 1001 | + | No |
Chemistry : DDE
ORF sequence :
MTKAVFQNPMFHDEDKAREALEAVRWPDGAICPHCGNSDQDKLAKIEGQKKSHRPGLYYCNECKGQFTVTVGTVFERSKVPLTKWWMAAHMMNSNKNGVS
AHEIHRALGVTYKTAWFMMHRLREAMVVSSGTPMGGSGSAIQADETYWGNTSKRSKSYRKGLKRKAAIVALVDAETGEARTFHVRHGVSASEVREILVTN
VDRKSTLVTDESRLYTITGGEFGDHQTMNHSGREYVNAAGFTTNNVENFFGVFKRGMRGTYTFCGEQHLQRYLTEFQFRYNNRSGLGISDGERTAKALKG
IEGKRLTYRPTN
AHEIHRALGVTYKTAWFMMHRLREAMVVSSGTPMGGSGSAIQADETYWGNTSKRSKSYRKGLKRKAAIVALVDAETGEARTFHVRHGVSASEVREILVTN
VDRKSTLVTDESRLYTITGGEFGDHQTMNHSGREYVNAAGFTTNNVENFFGVFKRGMRGTYTFCGEQHLQRYLTEFQFRYNNRSGLGISDGERTAKALKG
IEGKRLTYRPTN
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
468 bp | 155 aa | 1055 | 1522 | + | No |
Annotation : Phage related proteinDescription :
ORF sequence :
MISEAMAGASALKTAFDMAKALKDISDAAIRNGAVIELQEKILSAQEAQFALVKRVDDLEKQVASFEAKGSQMQRYQLKDYGAGSFAYELKESEARGEPI
HRACAACYQQGHISILQFSHNTEGQDWYECKRCNNMHHFGTRVPRTYSRTKTDYF
HRACAACYQQGHISILQFSHNTEGQDWYECKRCNNMHHFGTRVPRTYSRTKTDYF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
633 bp | 210 aa | 1589 | 2221 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRTRALIRRLVSSISFFEFFDMRDLDFNPNNLPKDVLEALGLITACSAHSDYVIESGIAGCLGVNIEYGSAVTTHMTTPHRKDVFLAAAELRIDDVHILI
HLEDLLDELVDALKVRNGYVHNSPAIDRSTNETFMIRTEARGSVDVSLIPLSVEVILRDAQRIYKAGISLYGLLDKLGLLPKIPDGVRPNRTHKDKAARK
KIRKSRRDRG
HLEDLLDELVDALKVRNGYVHNSPAIDRSTNETFMIRTEARGSVDVSLIPLSVEVILRDAQRIYKAGISLYGLLDKLGLLPKIPDGVRPNRTHKDKAARK
KIRKSRRDRG
Blast result :
Comments
ISNwi3 is 49% aa similar to ISPepr2. The second and the third ORF are passenger gene.
References
1] Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J.(2006) Appl. Environ. Microbiol. 72 (3), 2050-2063