ISNwi2
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007406 | ND | Nitrobacter winogradskyi | Nitrobacter winogradskyi Nb-255 |
DNA section
IS Length : 1750 bp
Ends
IR Length : 21/23
IRL : GATATATACCCTATGGACATGTAGAACATACCGTGATATAGAATGGGCAT
IRR : GATATATACCCTTAGGACATGTAATATGAATCGTGTTATTCGTCCGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTAGGCCA | GCCCG | ACGCAGCGAA | 5 |
DNA sequence
GATATATACCCTATGGACATGTAGAACATACCGTGATATAGAATGGGCATTCTCCTAGGAGGGAGAGTGCAATGGCTCAAAAGCCGTCGAAAATTCGCGA
ATTTCAGAAGCGGTTCCCTGATGAAGAGGCTTGCCTGACGCATTTGATGCGCACCCGGTTTGGCGAACGTCTGACCTGCTTCAAGTGTCAGAAGCAGGCG
ACCTATTACCGGGTCAAAAACCGCCGCTCCTTTGAGTGCGAGCATTGCGGCTATCAGGTGTATCCGACTGCCGGAACGCCGTTCGAAAAGACACGCACCA
GCCTGCGGGATTGGTTCTATGTCATGTTTCTGTTCTGCGAGACGCGGAACGGCGTGGCCGCGAAAGAAGTGCAGCGTCAGCTAGGCGTGACCTACAAGAC
CGCTTGGCGCATGTGCCATCTTATCCGGCTCTATATGGGCTACGTCGATGGCGACTATCCAATGGGCGGGCCCGGTAAGACCGTTGAGGCGGACGAAACG
TTCATCGGCGGCAAGGACAAGGCTGGCAAAGACGACAAAGCAATTGTCATGGGGATGATCGAGCGTGGTGGCGATGTCGTTACGCGCGTCGTCCATGCTC
GTACAAAGGCGCATATCTTGCCGCACATCGTTCGGTTTGTGAAAGAAGGTTCGCGCGTCCACACGGACGAGGCGTCAAACTTCAAGCTTCTCAAGGAGAA
GTATGGCTACGATCACGAAGCGGTTGATCACTCTGCGAAGGAGTACGTTCGCGGTGACGTACACACTAACTCAATCGAGTCGTTCTGGTCTCAGGTGAAG
CGTGGGATCAACGGGACCTATGTTTGGGTTTCGAAAAAGCACTTGCAGCTTTACCTTCGCGAGTTCGAGTATCGCCATAACTTGCGGAAGCAACCCGGCC
TGATGTTCGAGCTTCTTTTGCAGGCGTTCCCGAAGGTACGGGTTGAGTGACCATAGCCTGCAAAAGCTGATCGAAGCGCTTTCTCACCTTACTGTCTGAA
GACATGGCGGTCCTCTTGCAAAAAGGAATAAATGTTTCCTGTCGCGGCCTCATTCTCGCGATACGCGATGAATACCGAATAGCGCTGCTTCACTCGACCC
TTCTTAACCGCCCTCACTTCGACCAGATTTCCCGTACCGGGTATAGGCGATTTGTTTGCGGTGCCATCCCCCCAAAAATGGGGGCCATGGGCCGCTTGCG
CAATCGTTGCGATGGGTACGCGCACATGCTCACCTTCTGAAAACTTCACCGCGTCAACTCGCAGCAGCAACTGCGCTGGCTTATTAAACGACCATTGAAG
GTGTTCGTACAGGACTAGTTCCAGGGAGTGACCGGTCACAGGGCCAATAAATCTAACAGAAAAATATGGGGTTTGGACCTCGTATCCGTCTTTTACATCG
CTGGCCGGATGGAACACGACATTGAATACTCGCCGCCGATCTGCCCACCACCTCCGAAGCTGTGAGTTATCGTTGTAGAGGTCAGCATAAAATGTGCCGA
GTCCGAATGCGGCAATCGTCGCTAGGATGGCGATCCACGGCACGTCTACCCACCACGGCCGGAATTGAAGCCATTGTTGGCTGCAAAACCAAGCCGCCCC
AAACAATAAAATAAGCCCTGGTACGGGCAGATATTCCCTAAAAGGGAATTGGCTCTTGCGCATCCAAACGTCTCCCACGCCCGTCTAGGGCTAGTTGTGG
CAGACGGACGAATAACACGATTCATATTACATGTCCTAAGGGTATATATC
ATTTCAGAAGCGGTTCCCTGATGAAGAGGCTTGCCTGACGCATTTGATGCGCACCCGGTTTGGCGAACGTCTGACCTGCTTCAAGTGTCAGAAGCAGGCG
ACCTATTACCGGGTCAAAAACCGCCGCTCCTTTGAGTGCGAGCATTGCGGCTATCAGGTGTATCCGACTGCCGGAACGCCGTTCGAAAAGACACGCACCA
GCCTGCGGGATTGGTTCTATGTCATGTTTCTGTTCTGCGAGACGCGGAACGGCGTGGCCGCGAAAGAAGTGCAGCGTCAGCTAGGCGTGACCTACAAGAC
CGCTTGGCGCATGTGCCATCTTATCCGGCTCTATATGGGCTACGTCGATGGCGACTATCCAATGGGCGGGCCCGGTAAGACCGTTGAGGCGGACGAAACG
TTCATCGGCGGCAAGGACAAGGCTGGCAAAGACGACAAAGCAATTGTCATGGGGATGATCGAGCGTGGTGGCGATGTCGTTACGCGCGTCGTCCATGCTC
GTACAAAGGCGCATATCTTGCCGCACATCGTTCGGTTTGTGAAAGAAGGTTCGCGCGTCCACACGGACGAGGCGTCAAACTTCAAGCTTCTCAAGGAGAA
GTATGGCTACGATCACGAAGCGGTTGATCACTCTGCGAAGGAGTACGTTCGCGGTGACGTACACACTAACTCAATCGAGTCGTTCTGGTCTCAGGTGAAG
CGTGGGATCAACGGGACCTATGTTTGGGTTTCGAAAAAGCACTTGCAGCTTTACCTTCGCGAGTTCGAGTATCGCCATAACTTGCGGAAGCAACCCGGCC
TGATGTTCGAGCTTCTTTTGCAGGCGTTCCCGAAGGTACGGGTTGAGTGACCATAGCCTGCAAAAGCTGATCGAAGCGCTTTCTCACCTTACTGTCTGAA
GACATGGCGGTCCTCTTGCAAAAAGGAATAAATGTTTCCTGTCGCGGCCTCATTCTCGCGATACGCGATGAATACCGAATAGCGCTGCTTCACTCGACCC
TTCTTAACCGCCCTCACTTCGACCAGATTTCCCGTACCGGGTATAGGCGATTTGTTTGCGGTGCCATCCCCCCAAAAATGGGGGCCATGGGCCGCTTGCG
CAATCGTTGCGATGGGTACGCGCACATGCTCACCTTCTGAAAACTTCACCGCGTCAACTCGCAGCAGCAACTGCGCTGGCTTATTAAACGACCATTGAAG
GTGTTCGTACAGGACTAGTTCCAGGGAGTGACCGGTCACAGGGCCAATAAATCTAACAGAAAAATATGGGGTTTGGACCTCGTATCCGTCTTTTACATCG
CTGGCCGGATGGAACACGACATTGAATACTCGCCGCCGATCTGCCCACCACCTCCGAAGCTGTGAGTTATCGTTGTAGAGGTCAGCATAAAATGTGCCGA
GTCCGAATGCGGCAATCGTCGCTAGGATGGCGATCCACGGCACGTCTACCCACCACGGCCGGAATTGAAGCCATTGTTGGCTGCAAAACCAAGCCGCCCC
AAACAATAAAATAAGCCCTGGTACGGGCAGATATTCCCTAAAAGGGAATTGGCTCTTGCGCATCCAAACGTCTCCCACGCCCGTCTAGGGCTAGTTGTGG
CAGACGGACGAATAACACGATTCATATTACATGTCCTAAGGGTATATATC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
879 bp | 292 aa | 72 | 950 | + | No |
Chemistry : DDE
ORF sequence :
MAQKPSKIREFQKRFPDEEACLTHLMRTRFGERLTCFKCQKQATYYRVKNRRSFECEHCGYQVYPTAGTPFEKTRTSLRDWFYVMFLFCETRNGVAAKEV
QRQLGVTYKTAWRMCHLIRLYMGYVDGDYPMGGPGKTVEADETFIGGKDKAGKDDKAIVMGMIERGGDVVTRVVHARTKAHILPHIVRFVKEGSRVHTDE
ASNFKLLKEKYGYDHEAVDHSAKEYVRGDVHTNSIESFWSQVKRGINGTYVWVSKKHLQLYLREFEYRHNLRKQPGLMFELLLQAFPKVRVE
QRQLGVTYKTAWRMCHLIRLYMGYVDGDYPMGGPGKTVEADETFIGGKDKAGKDDKAIVMGMIERGGDVVTRVVHARTKAHILPHIVRFVKEGSRVHTDE
ASNFKLLKEKYGYDHEAVDHSAKEYVRGDVHTNSIESFWSQVKRGINGTYVWVSKKHLQLYLREFEYRHNLRKQPGLMFELLLQAFPKVRVE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 1663 | 989 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRKSQFPFREYLPVPGLILLFGAAWFCSQQWLQFRPWWVDVPWIAILATIAAFGLGTFYADLYNDNSQLRRWWADRRRVFNVVFHPASDVKDGYEVQTPY
FSVRFIGPVTGHSLELVLYEHLQWSFNKPAQLLLRVDAVKFSEGEHVRVPIATIAQAAHGPHFWGDGTANKSPIPGTGNLVEVRAVKKGRVKQRYSVFIA
YRENEAATGNIYSFLQEDRHVFRQ
FSVRFIGPVTGHSLELVLYEHLQWSFNKPAQLLLRVDAVKFSEGEHVRVPIATIAQAAHGPHFWGDGTANKSPIPGTGNLVEVRAVKKGRVKQRYSVFIA
YRENEAATGNIYSFLQEDRHVFRQ
Blast result :
Comments
ISNwi2 is 61% aa similar to ISSpo3. The second ORF is on complementary strand, this is a passenger gene.
References
1] Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J. (2006) Appl. Environ. Microbiol. 72 (3), 2050-2063