ISRhba1

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMT01000005 ND Rhodobacterales bacterium
Rhodobacterales bacterium HTCC2654
DNA section
IS Length : 2457 bp

Ends


IR Length : 23/27

IRL : GGGGCCTATATACTTAGCTAGCCAAAAATCTCTTGCGGCGGATGGCTAGT
IRR : GGGGCCTACATACTTAACTAGCCGCAATGACGGCTAGATCGGTTTTCCTA

Insertion site


Left flankDirect repeatRight flankDR Length
GACTCCCCCGAGGTTTTTTGAAACAGAGAAGAGGG8

DNA sequence

GGGGCCTATATACTTAGCTAGCCAAAAATCTCTTGCGGCGGATGGCTAGTTAGATTAAACATGATGCAGAAGGAGCTTGCATCATGTCCAAACCCGAAAC
CCTCTCCACCTTCGAGTTCTTCAAGAAGTTCCCGGATGAGGAAGCCGCCCGCAGGTTTTTCGAGGCGCGCCGCTGGGGCGATGAGCCGGTTTGCGGCCAC
TGTGGTTCGGTCAGTGTGACCGAGTGCAAAGACCATAAGCCCATGCCCTACCGCTGCAAGGACTGCCGGAAGCATTTCAGCGTCCGCACGGGCACCGTGT
TGGCTGAGAGCCGCCTTCCCCTTCAGAAGTGGCTTCTTGCTATCTTCATGCTCACCAGCGCCCGTAAGGGCATACCGAGCACTCAGATGGCCCGTGAACT
GGGGGTCACGCAGAAAACCGCGTGGTTCCTCGCCCAGCGCATCCGAGAGACGTGGCTGAAGGATCGTGACGATCACATGGACGGCCAGATGCAGGTTGAC
GAAACCTACATTGGGGGGCGCGAAAAGAACAAACATGCCGACAAGAAACTTCGCGCTGGTCGTGGCGCGGTTGGCAAGACTGCGGTTGTTGGTGTCCGCG
ATGAAGTTGGTCAGGTCCGCGCCGTAGTGGTTGAAAACACCAAGGCTGCGACCCTTGAGAAGTTCGTTCGCCAACACTGCAAGAAGGGGGCAACCGTCGT
CACGGACACTCACGGCGGTTACATTGGACTGACGGGCGCGGGCTACCGTCACATTCGGATTAATCACTCTGCTGGCGAGTATGTCCGCGACATGGCGCAT
ACCAACGGCATCGAAAGCTTCTGGTCTCTGCTGAAGCGCGGCTACATCGGCATCTACCACTACATGAGTGCCAAGCACCTTCATCGCTACATCAAGGAAT
ACTCATTCCGCCATAACACGTCGCAGGTCGGCACCATGGATTTCATCAACATGACAATCGACCGCATGGACGGCAAGCGACTGACATACAGGAGGCTGAC
CAATGCCTGATGAGAAGAAAGACATCATCGAACCTATCGACGCCAACTTTGAGGAAGTTGTGAGCAAGGTAGCACCGCGCCTTAAAGCATCATCCGGGCC
TGAGATTATTCCTGCGTCTGAAAGGGACGCCCTCGCTGACAATGAGGCAACGCATCGGGGCAAGCTCAGGATTGGGCCCGTCGAGATTCCCTGCGCGGTC
TTGAAAGACGGTCGTAGAGTTCTGTCTGGGCACGGAATTGCCAGCGTCCTTGGCGGTCGCAGCGGTGCAGCAAAGAGATTGAAAACAGAGGCAGAGAAAG
ACGGGGCCCATATGCCCGTCTTTCTGGCATCAAAAAGTCTTTTGCCATACATTTCCAAGGAGTTAATGGACGGGCCCCTCAAGCCGATAACTTATAAATC
TGGAGACACCGAGGCGGAAGGCTATCCAGCCGAAGCACTTCCTGAAATCTGCAACATATGGCTACAGGCTAGACAGGATGGGGTCCTTAATCCGCAGCAG
GCGGACAGGGCCCAAGCAGCGGAAATCGTTATGCGCGGTCTTGCGGACCTTGGCATCATCGGCCTCGTTGACGAAGCCACAGGATACCAAAACACCCGAG
ACCATGACGCCCTTCAGGCGATTTTGGACAAATACCTGCAAAAGGAATTTGCCGCATGGGCTAAGCGGTTCCCCGATGCTTTCTATCGCGAGATATTCAG
GCTTCGCGGATGGAGTTGGAATGCAATGTCGGTCGCTAGGCCGGGCGTGGTCGGAAAATACACAAACGACATTGTCTATGAACGCCTAGCCCCCGGCATC
CTCGAAGAGCTGCAAGCCATGAACCCAACAAAGGACGATGGGGGGCGTTTGAGACGCCATCACCAATTTCTCACTGAAGATATCGGGCACCCGGCACTAG
CACAGCACCTGCACGCTGTTATTGGCCTCATGCGGGCATCGGCCACATGGGAACAGTTCAAAACCATGCTAGATCGCGCCTTCCCCAAGAAGGGGACGCA
GTTAGAACTGCTACTGGACGACGACCGATAGCCCAAACCGCGAACGCATCAAGAACAAGATATGACTCGACACGCAATCCTGCGATTCGATATAGGTTAA
GAGACGGCTACCGTCACCATATATAGCTCCACGCCCGATAAGCAGTAGTTCTGGGGGCGCAAGGGGTGGCCCCAGTGGGCCGGGACATACCCGGATCGCA
CGAAGGAGCCTAATATGGTAGCGTGTGTATGGCCGAAACCGGTGAGCGTTTGCTCATACACCCGGTTTCGGTTTGGAAAGTGGGAATACGTGGTCTCGCA
CTGCCGTTCCTACCCGTCCCGCTAAGGTTGTCTAGGCCAAGGGACACGTAAGAAGATGGTAGCCGTCACTCCCTAAACGTTCCTATCATTAGGCGGAATT
TGGTGTCTAGGAAAACCGATCTAGCCGTCATTGCGGCTAGTTAAGTATGTAGGCCCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa841010+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKPETLSTFEFFKKFPDEEAARRFFEARRWGDEPVCGHCGSVSVTECKDHKPMPYRCKDCRKHFSVRTGTVLAESRLPLQKWLLAIFMLTSARKGIPST
QMARELGVTQKTAWFLAQRIRETWLKDRDDHMDGQMQVDETYIGGREKNKHADKKLRAGRGAVGKTAVVGVRDEVGQVRAVVVENTKAATLEKFVRQHCK
KGATVVTDTHGGYIGLTGAGYRHIRINHSAGEYVRDMAHTNGIESFWSLLKRGYIGIYHYMSAKHLHRYIKEYSFRHNTSQVGTMDFINMTIDRMDGKRL
TYRRLTNA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1029 bp342 aa10032031+No
ORF function : Passenger Gene
Annotation : Phage related proteinDescription :

ORF sequence :

MPDEKKDIIEPIDANFEEVVSKVAPRLKASSGPEIIPASERDALADNEATHRGKLRIGPVEIPCAVLKDGRRVLSGHGIASVLGGRSGAAKRLKTEAEKD
GAHMPVFLASKSLLPYISKELMDGPLKPITYKSGDTEAEGYPAEALPEICNIWLQARQDGVLNPQQADRAQAAEIVMRGLADLGIIGLVDEATGYQNTRD
HDALQAILDKYLQKEFAAWAKRFPDAFYREIFRLRGWSWNAMSVARPGVVGKYTNDIVYERLAPGILEELQAMNPTKDDGGRLRRHHQFLTEDIGHPALA
QHLHAVIGLMRASATWEQFKTMLDRAFPKKGTQLELLLDDDR

 

Blast result :
Comments
ISRhba1 is 50% aa similar to ISSpo3.
The second ORF is a phage-related protein.
References
1] Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank